HHsearch alignment for GI: 254780707 and conserved domain: PRK11260
>PRK11260 cystine transporter subunit; Provisional.
Probab=95.36 E-value=0.17 Score=27.05 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC----------CEEEEEECCHHHHHH------------HHHHHHHHHHCCCCEEEEEE
Q ss_conf 48999999999999831420137----------679998034258999------------99999999877980799981
Q gi|254780707|r 3 FFFVVLMCFVVLEVYCGTGTFAR----------NRIRIAGSSTLFPYS------------KIIAENFSEYFPEFKTPFVE 60 (346)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~a~----------~~I~i~GSst~~P~~------------~~~a~~y~~~~~~~~~~~~~ 60 (346)
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~d~~G~~~GfdvDl~~~ia~~l-g~~~e-~~ 83 (264)
T PRK11260 6 RQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLTGFEVEFAEALAKHL-GVKAS-LK 83 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHH-CCCEE-EE
T ss_conf 99999999999999835765434243999986998999977898893689999998887199999999984-99569-99
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf 5762057898852101335301213320247678767624878724666521541255416665
Q gi|254780707|r 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMV 124 (346)
Q Consensus 61 ~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346)
T Consensus 84 ~~~~~~~i~~L~~g~----~Di~~~~~t~T~eR~~~~------~F-s~PY~~~~~~~~v~~~~~ 136 (264)
T PRK11260 84 PTKWDGMLASLDSKR----IDVVINQVTISDERKKKY------DF-STPYTVSGIQALVKKGNE 136 (264)
T ss_pred ECCHHHHHHHHHCCC----CCEEECCCCCCHHHHHHC------CC-CCCEEEEEEEEEEECCCC
T ss_conf 788899999986699----466725753588888517------76-774377445999987897