HHsearch alignment for GI: 254780707 and conserved domain: PRK11553
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional.
Probab=96.97 E-value=0.015 Score=32.95 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 924899999999-9999831420137679998034258999999-99999877980799981576205789885210133
Q gi|254780707|r 1 MRFFFVVLMCFV-VLEVYCGTGTFARNRIRIAGSSTLFPYSKII-AENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD 78 (346)
Q Consensus 1 Mk~~~~~~~~~~-~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~-a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~ 78 (346)
T Consensus 1 ~~~~l~~~la~~~~~~~~~~~~~~~~~~lrIgyq~~~~~~~~~~~~~~~ek~~~~~kV~w~~F~~G~~~~eAl~aG~--- 77 (314)
T PRK11553 1 MRNIIKLALAGLLSVSTLAVAAESSPEALRIGYQKGSIGLVLAKSHQLLEKRFPQTKISWVEFPAGPQMLEALNVGS--- 77 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHCCC---
T ss_conf 97799999999999987544433489759999617741589998528676617898358997897489999997699---
Q ss_pred CCCEEECCCC
Q ss_conf 5301213320
Q gi|254780707|r 79 TIDIVNSSRK 88 (346)
Q Consensus 79 ~~dig~ssr~ 88 (346)
T Consensus 78 -iD~~~~g~~ 86 (314)
T PRK11553 78 -IDLGSTGDI 86 (314)
T ss_pred -CCEEEECCH
T ss_conf -754511585