HHsearch alignment for GI: 254780707 and conserved domain: PRK12680
>PRK12680 transcriptional regulator CysB-like protein; Reviewed.
Probab=94.97 E-value=0.23 Score=26.38 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=79.2
Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 90 ~~~G~L~Ig~~~t~a~~~LP~vi~~f~~~yP~V~l~-l~~~~~~~l~e~l~~g~----~Diai~~~~~~~~~-------- 156 (327)
T PRK12680 90 ESQGQLTLTTTHTQARFVLPPAVAQIKQAYPQVSVH-LQQAAESAALDLLGQGD----ADIAVVSTAGGEPS-------- 156 (327)
T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCCC--------
T ss_conf 873379999842277775689999999868996799-99898288999997899----40999447777997--------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 157 --~~~~~pl~~~~~~vvvP~~HpL~~~---------------------~~~i~L~~L----a~~plI~~~--~g~~~r~~ 207 (327)
T PRK12680 157 --AGIAVPLYRWRRLVVVPRGHALDTP---------------------RTAPDMAAL----AEHPLISYD--SSTRPGSS 207 (327)
T ss_pred --CCEEEEEEECCEEEEEECCCCCCCC---------------------CCCCCHHHH----HCCCEEECC--CCCCHHHH
T ss_conf --6547675223579999789810058---------------------999999998----089889638--99867999
Q ss_pred HHHHHCC
Q ss_conf 9988513
Q gi|254780707|r 182 LEKKVLQ 188 (346)
Q Consensus 182 F~~~v~~ 188 (346)
T Consensus 208 id~af~~ 214 (327)
T PRK12680 208 LQRAFAQ 214 (327)
T ss_pred HHHHHHH
T ss_conf 9999997