HHsearch alignment for GI: 254780707 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=97.55 E-value=0.0049 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=29.8
Q ss_pred EEEEEECCCCCCCHHHHH-HHHHHHCHHHCC-CCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 899970788566889999-999974987405-2202775596348999999999999607
Q gi|254780707|r 286 LLFYVKRQHFNSVLGLRE-YVSFSVSDEMMA-PDSQLFQYGLIPISNEERKSVRDSIAVG 343 (346)
Q Consensus 286 ly~yv~~~~~~~~~~~~~-Fl~~~ls~~~~~-~~~~~~~~GyvPLp~~~~~~~~~~~~~~ 343 (346)
T Consensus 227 ~~~v~~~l~~~~~~~i~~all~l~~~d~~~~~~l~~~~~~gf~~a~d~DYd~vR~~~ka~ 286 (288)
T TIGR03431 227 PIVYRKDLPADLKAKIRKAFLNYHKTDKACFEKIAGGDLKGFVAASDKDYDPIRDLKKAK 286 (288)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 189969999999999999998078678768998742554782888878779999999861