Query         gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs    141 out of 1801
Neff          9.3 
Searched_HMMs 39220
Date          Sun May 29 20:00:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780707.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG0226 PstS ABC-type phosphat 100.0       0       0  381.0  22.1  268   24-332    41-317 (318)
  2 PRK10918 phosphate transporter 100.0       0       0  355.1  21.4  300    1-345     1-338 (346)
  3 TIGR02136 ptsS_2 phosphate bin  99.9 4.5E-26 1.2E-30  163.9   5.8  258   27-328    44-308 (308)
  4 COG0725 ModA ABC-type molybdat  99.4 9.3E-10 2.4E-14   73.1  21.1  247    1-329     1-258 (258)
  5 PRK10677 modA molybdate transp  99.3 1.7E-09 4.2E-14   71.7  17.9  251    2-326     3-255 (257)
  6 PRK04168 hypothetical protein;  99.2   1E-08 2.6E-13   67.3  20.8  117    1-124     5-124 (336)
  7 TIGR00975 3a0107s03 phosphate   99.2 1.6E-11 4.2E-16   82.8   5.0  272   29-342     2-322 (324)
  8 TIGR03227 PhnS 2-aminoethylpho  99.1 8.1E-09 2.1E-13   67.8  15.9  276    7-338    17-323 (367)
  9 TIGR03261 phnS2 putative 2-ami  99.0 5.2E-08 1.3E-12   63.3  16.8  261   14-329    10-288 (334)
 10 PRK10852 thiosulfate transport  98.8   3E-07 7.5E-12   59.1  14.7  263   10-341    11-301 (338)
 11 PRK10752 sulfate transporter s  98.8 3.9E-07 9.9E-12   58.5  13.4   47  293-342   250-296 (329)
 12 COG1613 Sbp ABC-type sulfate t  98.6 3.6E-06 9.1E-11   53.1  14.4  254   26-341    38-312 (348)
 13 CHL00180 rbcR LysR transcripti  98.4 1.8E-05 4.6E-10   49.2  13.9  207   24-311    93-302 (307)
 14 PRK11242 DNA-binding transcrip  98.4 4.5E-05 1.2E-09   47.0  15.3  201   23-310    88-289 (292)
 15 PRK10837 putative DNA-binding   98.4 4.9E-05 1.2E-09   46.8  15.0  198   24-309    87-287 (291)
 16 COG4588 AcfC Accessory coloniz  98.3 0.00017 4.4E-09   43.8  16.8  246    1-325     1-250 (252)
 17 PRK09906 DNA-binding transcrip  98.2 0.00031   8E-09   42.3  16.9  201   24-310    88-289 (296)
 18 TIGR03339 phn_lysR aminoethylp  98.1 0.00047 1.2E-08   41.3  14.7  196   22-307    83-278 (279)
 19 PRK12679 cbl transcriptional r  98.1 0.00028 7.2E-09   42.6  13.4  202   23-309    90-292 (316)
 20 PRK09501 potD spermidine/putre  98.0 0.00075 1.9E-08   40.2  16.4  281    1-341     1-309 (348)
 21 pfam03466 LysR_substrate LysR   98.0 0.00055 1.4E-08   40.9  14.3  200   23-309     3-205 (209)
 22 PRK12683 transcriptional regul  98.0 0.00047 1.2E-08   41.3  13.3  203   23-311    90-294 (308)
 23 PRK11205 tbpA thiamine transpo  97.9 0.00056 1.4E-08   40.9  13.2   72   11-84      4-79  (326)
 24 PRK12684 transcriptional regul  97.9 0.00082 2.1E-08   40.0  13.3  202   23-310    90-293 (313)
 25 COG4150 CysP ABC-type sulfate   97.8 0.00012   3E-09   44.7   8.1  277    1-340     6-305 (341)
 26 PRK09986 DNA-binding transcrip  97.7  0.0025 6.4E-08   37.3  15.2  199   23-309    78-277 (278)
 27 PRK12682 transcriptional regul  97.6  0.0026 6.5E-08   37.2  11.8  201   24-311    91-294 (309)
 28 COG1840 AfuA ABC-type Fe3+ tra  97.6  0.0023 5.9E-08   37.4  11.4  234   43-330     1-253 (299)
 29 TIGR03431 PhnD phosphonate ABC  97.5  0.0049 1.2E-07   35.7  16.8   58  286-343   227-286 (288)
 30 PRK03601 transcriptional regul  97.5  0.0052 1.3E-07   35.5  15.4   83   25-123    88-171 (275)
 31 pfam01547 SBP_bac_1 Bacterial   97.5  0.0031 7.9E-08   36.8  11.2   55   32-89      2-60  (260)
 32 COG2998 TupB ABC-type tungstat  97.5  0.0063 1.6E-07   35.1  15.2  135   14-181    19-155 (280)
 33 PRK10974 glycerol-3-phosphate   97.5  0.0066 1.7E-07   35.0  18.8  111   11-124    12-157 (439)
 34 COG4143 TbpA ABC-type thiamine  97.3  0.0099 2.5E-07   34.0  14.2  118    1-123     1-140 (336)
 35 COG1653 UgpB ABC-type sugar tr  97.3    0.01 2.6E-07   33.9  12.0   59   27-86     32-94  (433)
 36 PRK11151 DNA-binding transcrip  97.3   0.011 2.8E-07   33.7  14.9  200   24-311    89-292 (305)
 37 PRK03537 hypothetical protein;  97.2  0.0044 1.1E-07   35.9   9.3   41  277-329   146-186 (188)
 38 TIGR01256 modA molybdate ABC t  97.2   0.013 3.3E-07   33.3  14.2  216   36-324     4-225 (225)
 39 PRK12681 cysB transcriptional   97.2   0.013 3.3E-07   33.3  11.6  124   23-189    90-214 (324)
 40 PRK11233 nitrogen assimilation  97.0   0.022 5.6E-07   32.0  18.1  200   22-311    87-290 (305)
 41 PRK11553 alkanesulfonate trans  97.0   0.015 3.8E-07   32.9  10.1   84    1-88      1-86  (314)
 42 PRK11716 DNA-binding transcrip  96.9   0.025 6.4E-07   31.7  13.9   84   23-121    64-148 (269)
 43 PRK09495 glnH glutamine ABC tr  96.8   0.014 3.6E-07   33.1   8.7  109    1-123     1-120 (247)
 44 COG2358 Imp TRAP-type uncharac  96.6   0.011 2.8E-07   33.7   7.0  124   24-186    24-157 (321)
 45 COG1910 Periplasmic molybdate-  96.6   0.038 9.6E-07   30.7   9.7  194   36-312     5-201 (223)
 46 PRK09474 malE maltose ABC tran  96.6   0.046 1.2E-06   30.2  10.8  120    1-124     1-146 (394)
 47 PRK10682 putrescine transporte  96.4   0.055 1.4E-06   29.8  16.0  116    2-124     6-147 (370)
 48 PRK09791 putative DNA-binding   96.0   0.092 2.3E-06   28.6  16.1   92   21-126    90-182 (302)
 49 TIGR00971 3a0106s03 sulfate AB  95.8    0.11 2.9E-06   28.1  10.5  249   28-340    19-288 (320)
 50 PRK10341 DNA-binding transcrip  95.6    0.14 3.5E-06   27.6  14.8  196   25-310    96-296 (312)
 51 PRK11260 cystine transporter s  95.4    0.17 4.4E-06   27.0   9.3  109    3-124     6-136 (264)
 52 PRK12680 transcriptional regul  95.0    0.23 5.8E-06   26.4  12.5  124   23-188    90-214 (327)
 53 COG2182 MalE Maltose-binding p  94.9    0.24 6.2E-06   26.2  15.6   66  267-335   284-350 (420)
 54 PRK10797 glutamate and asparta  94.8    0.25 6.5E-06   26.1   8.9   88   26-125    40-145 (302)
 55 PRK11139 DNA-binding transcrip  94.2    0.35 8.9E-06   25.3  12.9   80   24-122    92-172 (295)
 56 PRK11013 DNA-binding transcrip  93.7    0.44 1.1E-05   24.8  11.8  121   24-188    92-213 (309)
 57 COG0687 PotD Spermidine/putres  92.9    0.59 1.5E-05   24.1  17.9  282    1-335     2-317 (363)
 58 PRK09701 D-allose transporter   90.9       1 2.6E-05   22.7   7.6   99    1-102     1-108 (311)
 59 COG1638 DctP TRAP-type C4-dica  89.9     1.2 3.2E-05   22.3   8.0   87    1-88      1-94  (332)
 60 COG1732 OpuBC Periplasmic glyc  89.6     1.3 3.4E-05   22.1   7.6   57   22-79     29-87  (300)
 61 TIGR03418 chol_sulf_TF putativ  89.0     1.5 3.8E-05   21.9  13.2   58   23-88     86-144 (291)
 62 PRK09508 leuO leucine transcri  88.9     1.5 3.8E-05   21.8   9.9   95   23-133   109-206 (314)
 63 PRK03095 prsA peptidylprolyl i  86.8       2 5.2E-05   21.1   6.0   47    1-47      1-48  (287)
 64 PRK05137 tolB translocation pr  86.1     0.9 2.3E-05   23.1   3.4   38    1-38      1-39  (437)
 65 PRK11063 metQ DL-methionine tr  82.9     3.1 7.9E-05   20.1  16.4  140    1-181     1-145 (271)
 66 COG0715 TauA ABC-type nitrate/  82.4     3.2 8.3E-05   20.0  12.0   64   25-92     30-95  (335)
 67 pfam06316 Ail_Lom Enterobacter  81.6     1.8 4.6E-05   21.4   3.4   31    1-31      1-34  (199)
 68 PRK10355 xylF D-xylose transpo  80.3     3.9 9.9E-05   19.5   8.3  100    1-102     1-107 (330)
 69 PRK10653 D-ribose transporter   76.7       5 0.00013   18.9  10.1   82    1-84      3-87  (295)
 70 PRK09934 putative fimbrial pro  70.6       6 0.00015   18.5   3.6   34    1-35      1-36  (171)
 71 PRK09408 ompX outer membrane p  70.2     5.8 0.00015   18.6   3.5   32    1-32      1-32  (171)
 72 COG3221 PhnD ABC-type phosphat  67.2     8.5 0.00022   17.6  10.7   20  324-343   275-294 (299)
 73 PRK10959 outer membrane protei  65.4     6.2 0.00016   18.4   2.8   38    1-38      1-38  (212)
 74 PRK10796 LPS-assembly lipoprot  65.1     9.4 0.00024   17.4   5.3   54    1-56      1-62  (196)
 75 pfam08085 Entericidin Enterici  64.1     4.9 0.00012   19.0   2.1   30    1-34      1-30  (42)
 76 PRK04405 prsA peptidylprolyl i  63.2     8.8 0.00022   17.6   3.3   33    1-34      5-38  (298)
 77 PRK13486 bifunctional enteroba  62.6      10 0.00027   17.1   4.0   72    1-75      1-91  (696)
 78 PRK04922 tolB translocation pr  60.4      11 0.00029   16.9   3.5   39    1-39      1-41  (439)
 79 PRK01742 tolB translocation pr  58.4      11 0.00028   17.0   3.0   40    1-40      1-42  (430)
 80 PRK11087 hypothetical protein;  57.4      13 0.00032   16.7   3.2   36    1-36      1-42  (238)
 81 PRK03629 tolB translocation pr  56.2     9.8 0.00025   17.3   2.5   37    1-40      1-38  (430)
 82 pfam02402 Lysis_col Lysis prot  55.9     4.2 0.00011   19.3   0.6   34    1-38      1-34  (46)
 83 TIGR01000 bacteriocin_acc bact  53.9      12  0.0003   16.8   2.6   69    3-71     20-103 (476)
 84 PRK11627 hypothetical protein;  52.8      15 0.00037   16.3   3.0   27    1-31      2-28  (192)
 85 pfam07996 T4SS Type IV secreti  51.4      16 0.00042   16.0   4.4   32    1-34      1-32  (217)
 86 PRK11074 putative DNA-binding   51.2      16 0.00042   16.0   9.0   89   23-125    89-178 (300)
 87 pfam03401 Bug Tripartite trica  50.6      17 0.00043   16.0  10.7   91   40-135     2-98  (274)
 88 PRK11917 bifunctional adhesin/  50.5      17 0.00043   16.0   7.4   86   26-123    38-138 (259)
 89 pfam12262 Lipase_bact_N Bacter  49.5      12 0.00031   16.7   2.1   23    1-23      1-23  (269)
 90 PRK00178 tolB translocation pr  48.8      18 0.00046   15.8   2.9   37    1-39      1-38  (433)
 91 PRK12450 foldase protein PrsA;  48.3      18 0.00047   15.8   3.0   33    1-33      4-38  (309)
 92 PRK11622 putative ABC transpor  47.7      19 0.00048   15.7   7.6   73    1-74      2-88  (401)
 93 COG5510 Predicted small secret  47.4      12  0.0003   16.8   1.8   29    1-33      2-30  (44)
 94 PRK10259 hypothetical protein;  46.5      20  0.0005   15.6   6.8   51    1-51      1-63  (86)
 95 PRK13484 putative iron-regulat  46.4      18 0.00047   15.8   2.6   40    1-40      1-45  (682)
 96 COG1464 NlpA ABC-type metal io  45.3      21 0.00052   15.5  11.5   27  288-315   228-254 (268)
 97 PRK10641 btuB vitamin B12/coba  43.9      22 0.00055   15.4   3.5   38    1-40      2-40  (615)
 98 PRK13697 cytochrome c6; Provis  42.9      19 0.00049   15.6   2.3   26    1-26      1-27  (111)
 99 PRK10449 heat-inducible protei  42.0      21 0.00053   15.5   2.4   21    1-21      1-21  (140)
100 PRK10086 DNA-binding transcrip  41.9      23 0.00059   15.2   9.7   79   24-121   100-179 (311)
101 KOG1680 consensus               40.6      12  0.0003   16.8   0.9   40   39-86     65-104 (290)
102 TIGR03525 GldK gliding motilit  40.4      20 0.00051   15.5   2.1   18    1-18      1-18  (449)
103 COG2113 ProX ABC-type proline/  40.3      25 0.00063   15.0  10.7   92    1-99      1-100 (302)
104 pfam09084 NMT1 NMT1/THI5 like.  40.3      25 0.00063   15.0   6.7   47   37-88      5-51  (216)
105 TIGR03502 lipase_Pla1_cef extr  39.1      23 0.00059   15.2   2.2   21    1-21      1-21  (792)
106 PRK04792 tolB translocation pr  38.6      23 0.00059   15.2   2.2   36    1-39      2-38  (450)
107 PRK13528 outer membrane recept  38.6      26 0.00067   14.9   3.0   33    1-33      3-42  (727)
108 cd07200 cPLA2_Grp-IVA Group IV  38.5      26 0.00067   14.9   2.6   24   51-75     39-62  (505)
109 COG4676 Uncharacterized protei  38.3      25 0.00064   15.0   2.3   71    1-75      1-73  (268)
110 pfam10566 Glyco_hydro_97 Glyco  38.3      27 0.00068   14.9   2.8   21    1-21      1-21  (643)
111 pfam09403 FadA Adhesion protei  37.9      25 0.00065   15.0   2.3   21    1-21      1-21  (126)
112 cd07323 LAM LA motif RNA-bindi  37.8      27 0.00068   14.8   2.4   29  301-329     4-36  (75)
113 pfam07901 DUF1672 Protein of u  37.5      27  0.0007   14.8   4.8   22    1-22      1-22  (304)
114 pfam06551 DUF1120 Protein of u  35.6      30 0.00075   14.6   3.9   65    1-96      1-68  (145)
115 PRK13883 conjugal transfer pro  35.1      25 0.00063   15.0   1.8   51    1-55      1-53  (156)
116 COG5567 Predicted small peripl  34.9      30 0.00077   14.6   2.6   19    1-19      1-19  (58)
117 TIGR01779 TonB-B12 TonB-depend  34.1      24 0.00061   15.1   1.6   78    1-80      1-104 (644)
118 pfam06510 DUF1102 Protein of u  33.9      31  0.0008   14.5   2.5   22    1-22      1-22  (183)
119 PRK10510 putative outer membra  33.9      31  0.0008   14.5   6.9   23  160-182   139-161 (219)
120 cd07201 cPLA2_Grp-IVB-IVD-IVE-  33.2      19 0.00049   15.7   1.0   23   51-74     48-70  (541)
121 COG2143 Thioredoxin-related pr  32.9      33 0.00083   14.4   3.0  111    1-142     2-116 (182)
122 COG4521 TauA ABC-type taurine   32.1      34 0.00086   14.3   2.8   82    1-89      4-89  (334)
123 PRK00031 lolA outer-membrane l  32.0      34 0.00087   14.3   2.3   15    1-15      1-15  (201)
124 TIGR01098 3A0109s03R phosphona  31.9      34 0.00087   14.3   6.4  142    1-179     1-182 (299)
125 COG2834 LolA Outer membrane li  30.5      36 0.00092   14.1   4.8   54    2-68      3-56  (211)
126 cd08038 LARP_2 La RNA-binding   30.2      29 0.00074   14.7   1.5   26  304-329     7-36  (73)
127 TIGR02927 SucB_Actino 2-oxoglu  30.0      20 0.00052   15.5   0.7   40   26-70    282-321 (607)
128 CHL00132 psaF photosystem I su  29.7      37 0.00095   14.1   2.1   24    1-24      1-24  (185)
129 TIGR00247 TIGR00247 conserved   29.4      38 0.00096   14.0   4.3   36  276-311   323-369 (373)
130 PRK09810 entericidin A; Provis  28.3      39 0.00098   14.0   1.9   21    1-21      2-22  (41)
131 PRK02998 prsA peptidylprolyl i  28.1      40   0.001   13.9   5.6   48    1-50      1-52  (283)
132 PRK02889 tolB translocation pr  27.8      40   0.001   13.9   3.5   39    1-39      1-42  (430)
133 pfam08139 LPAM_1 Prokaryotic m  27.8      37 0.00095   14.1   1.7   17    1-17      1-17  (26)
134 PRK08139 enoyl-CoA hydratase;   27.0      41   0.001   13.8   1.8   34   37-75     36-71  (265)
135 PRK10477 outer membrane lipopr  26.9      33 0.00084   14.4   1.3   29    1-29      1-29  (177)
136 PRK13513 putative outer membra  26.8      42  0.0011   13.8   3.1   38    2-39      6-49  (660)
137 PRK10082 putative DNA-binding   26.1      43  0.0011   13.7  15.9   57   22-86     97-154 (303)
138 PRK10760 murein hydrolase B; P  26.0      44  0.0011   13.7   4.0   51    1-51      1-69  (357)
139 PRK09967 putative outer membra  25.5      45  0.0011   13.6   2.3   20  162-181    81-100 (160)
140 TIGR01672 AphA HAD superfamily  25.5      45  0.0011   13.6   2.6   31    1-31      1-32  (248)
141 PRK09733 putative fimbrial pro  25.3      45  0.0011   13.6   3.6   33    1-34      2-34  (181)
142 PRK02515 psbU photosystem II c  25.2      45  0.0011   13.6   1.9   19    1-19      1-19  (144)
143 TIGR02747 TraV type IV conjuga  25.2      44  0.0011   13.7   1.7   20    1-20      2-22  (174)
144 TIGR02213 lolE_release lipopro  24.4      37 0.00095   14.1   1.2   29  247-275    98-126 (416)
145 PRK12696 flgH flagellar basal   23.8      40   0.001   13.9   1.3   16    1-16      2-17  (238)
146 cd08034 LARP_1_2 La RNA-bindin  23.6      49  0.0012   13.4   2.5   29  301-329     4-36  (73)
147 PRK06072 enoyl-CoA hydratase;   23.5      49  0.0012   13.4   2.8   40   37-86     18-59  (240)
148 pfam07172 GRP Glycine rich pro  23.1      35  0.0009   14.2   0.9   19    7-25      8-26  (91)
149 KOG3842 consensus               23.0      34 0.00086   14.3   0.8   85   77-174   118-206 (429)
150 PRK10260 hypothetical protein;  22.8      50  0.0013   13.3   2.3   25    1-25      1-25  (306)
151 PRK08223 hypothetical protein;  22.7      51  0.0013   13.3   7.8   84   37-125    80-168 (287)
152 PRK10159 outer membrane phosph  22.5      51  0.0013   13.3   3.2   32    1-35      1-39  (351)
153 PRK11482 putative DNA-binding   22.4      52  0.0013   13.3  10.7   93   24-134    64-159 (266)
154 PRK10632 putative DNA-binding   22.3      52  0.0013   13.3  10.3   81   22-121    88-169 (309)
155 TIGR00113 queA S-adenosylmethi  22.3      30 0.00077   14.5   0.4   17  166-182    66-85  (364)
156 PRK03002 prsA peptidylprolyl i  21.8      53  0.0013   13.2   5.7   46    1-46      1-50  (285)
157 pfam04710 Pellino Pellino. Pel  21.7      48  0.0012   13.4   1.4   84   79-175   107-194 (416)
158 cd08031 LARP_4_5_like La RNA-b  21.4      54  0.0014   13.1   2.5   29  301-329     4-36  (75)
159 PRK11023 hypothetical protein;  20.8      56  0.0014   13.1   1.8   19    1-19      1-19  (191)
160 PRK02944 OxaA-like protein pre  20.4      57  0.0014   13.0   2.7   41    1-41      1-46  (255)

No 1  
>COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=381.03  Aligned_cols=268  Identities=23%  Similarity=0.365  Sum_probs=227.6

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             37679998034258999999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r   24 ARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS  103 (346)
Q Consensus        24 a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~  103 (346)
                      .+.+|+++|||+++|++++|+++|++.||++++ +|+++|||+|+++++.+.    +|||++||||+++|.+.|.+. ..
T Consensus        41 ~~~~l~~~GSttv~p~~~~~a~~~~~~~~~~~v-~~q~~GSg~G~~~~~~~~----vDig~ss~p~~~~e~~~~~~~-~~  114 (318)
T COG0226          41 ASGSLTIAGSTTVAPLMEAWAEEFQKAYPNVKV-NVQAGGSGAGIKQALAGG----VDIGASSRPLKDSEKEADAKA-GK  114 (318)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEE-EEECCCCHHHHHHHHCCC----CCCCCCCCCCCCCHHHHHHHC-CC
T ss_conf             543599836573899999999999987899478-763686618899875267----703135766663267998740-79


Q ss_pred             CCEEEEEECCCCEEEECCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             724666521541255416665-4568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  104 DIQEVTIGHDGILLVSDRDMV-SVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       104 ~~~~~~v~~d~i~i~~n~~~~-~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                      ++++++++.|+|++++|.+++ .++||.++|++||           .|+|++|+|+++.+||.+|.+++|+++|||++.|
T Consensus       115 ~l~~~pva~d~i~vi~N~~~~~~~~Lt~~~l~~If-----------~G~it~W~d~~~~~~n~~I~vv~R~~~SGT~~~F  183 (318)
T COG0226         115 KLVEFPVAIDAIVVIVNLPNPDVLNLTKDQLADIF-----------SGKITNWNDVGGQLLNPGITVVGRSDGSGTTETF  183 (318)
T ss_pred             CCEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHH-----------HCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf             86697788777999975898541347999999997-----------0888755566865589985688478777769999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL  262 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~  262 (346)
                      +++++. +...                  .+......++.  ....+.+..+++.+.++|++|||++++|+..+...+..
T Consensus       184 ~~~l~~-~~~~------------------~~~g~~~~~~~--~~~~~~n~~v~~~v~~tp~aIGYv~~~y~~~n~~~~~~  242 (318)
T COG0226         184 TEYLLG-WKKK------------------VGAGKTVDWPA--AVGGKGNEGVVAAVSQTPGAIGYVGYAYAVQNNLKLAA  242 (318)
T ss_pred             HHHHHH-HHHC------------------CCCCCCCCCCC--EECCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCHHHH
T ss_conf             999876-5320------------------34566544564--00368857889888539984599986796524305666


Q ss_pred             CCCC------CCCCCHHHHCCCCC-CCEEEEEEEEECCCC-CCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHH
Q ss_conf             3445------76789556027987-503678999707885-6688999999997498740522027755963489999
Q gi|254780707|r  263 VPID------GIVPSMGTIVSGLY-PISRPLLFYVKRQHF-NSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEE  332 (346)
Q Consensus       263 ~~~~------~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~-~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~  332 (346)
                      +..+      .++|+.+++.+++| ||+|++|+|+++++. ...+++++|++|+++++++.   ++.+.||||||++.
T Consensus       243 ~~~~~~~~~~~v~p~~~~i~~~~y~Pi~~~~~~~v~~~~~~~~~~~~~~Fi~~~~~~~~~~---~~~~~Gyvplp~~~  317 (318)
T COG0226         243 LANKAGGVGPTVEPTAENIANGKYSPIVRPLFIYVNKNPKDTKAPAVKAFLDWALSPGGQQ---IVEEVGYVPLPDAV  317 (318)
T ss_pred             HHHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCE---EHHHCCEECCCCCC
T ss_conf             4201577666656457775337735512578999827766665889999999996787600---15208816187244


No 2  
>PRK10918 phosphate transporter subunit; Provisional
Probab=100.00  E-value=0  Score=355.05  Aligned_cols=300  Identities=15%  Similarity=0.173  Sum_probs=227.9

Q ss_pred             CCHHHHHHHH--HHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             9248999999--99999983142013767999803425899999999999877980799981576205789885210133
Q gi|254780707|r    1 MRFFFVVLMC--FVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD   78 (346)
Q Consensus         1 Mk~~~~~~~~--~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~   78 (346)
                      ||....+..+  +++|++.+. .+.++.+|+.+|||+++|+++.|+++|++.+ +.++ +|++.|||+|+++|++|.   
T Consensus         1 ~~~~~~~~~~~~~~~ls~~a~-~a~aa~~l~GaGaTf~~p~~~~w~~~~~~~~-g~~v-~Y~~~GSG~G~~~f~~g~---   74 (346)
T PRK10918          1 MKVMRTTVATVVAATLSMSAF-SAFAAASLTGAGATFPAPVYAKWADTYQKET-GNKV-NYQGIGSSGGVKQIIANT---   74 (346)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-CCEE-EECCCCCHHHHHHHHCCC---
T ss_conf             901488999999999988776-7876166124143349999999999999845-9868-982668789999997389---


Q ss_pred             CCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             53012133202476787676248787246665215412554166654---568888888764102555553236730232
Q gi|254780707|r   79 TIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVS---VSLTVEDLYKALASYLIVDDKVVFNPLKKW  155 (346)
Q Consensus        79 ~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~---~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W  155 (346)
                       +|||+||+||+++|+++      ..+.++|++.++|++++|.++..   +.|+.+.|.+||           .|+|++|
T Consensus        75 -vdFa~SD~pls~~~~~~------~~~~~~P~~~g~iav~yNlpgv~~~~L~L~~~~la~IF-----------~G~It~W  136 (346)
T PRK10918         75 -VDFGASDAPLSDEKLAQ------EGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIY-----------LGKIKKW  136 (346)
T ss_pred             -CCEEECCCCCCHHHHHH------CCCCCCCEEECCEEEEEECCCCCCCEEEECHHHHHHHH-----------HCCCCCC
T ss_conf             -85664588889788833------68714885611279999778876750312899999998-----------4856767


Q ss_pred             HHC-------CCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECC
Q ss_conf             310-------0111224503544885423578999885134555654101111101366000134443102466402116
Q gi|254780707|r  156 SEI-------RPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVD  228 (346)
Q Consensus       156 ~~~-------~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  228 (346)
                      ||+       +..||+++|+++||+|+|||+++|++++....+.|...               .+....+.+..+ + ..
T Consensus       137 nDp~I~~lNPg~~LP~~~I~vv~RsD~SGTT~~FT~yLs~~s~~W~~~---------------~g~g~t~~wp~g-~-g~  199 (346)
T PRK10918        137 DDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNK---------------VGAGSTVNWPTG-L-GG  199 (346)
T ss_pred             CCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHC---------------CCCCCCCCCCCC-C-CC
T ss_conf             876566308899899986399970798602999999998629133304---------------788864348877-6-88


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC---CCCCCCHHHHC---------------------CCCCCCEE
Q ss_conf             6236777631015321001332001100111001344---57678955602---------------------79875036
Q gi|254780707|r  229 GDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPI---DGIVPSMGTIV---------------------SGLYPISR  284 (346)
Q Consensus       229 ~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~---~~v~p~~~~i~---------------------~g~YPl~r  284 (346)
                      +.+..+.+.+.+++++|||++++|+..+......+.+   +.|.|+.+++.                     .++|||+.
T Consensus       200 ~Gn~GVa~~V~~t~gsIGYve~aya~~~~l~~a~l~N~~G~~V~Pt~~s~~aA~~~~~~~~~~~~~l~~~~g~~aYPIv~  279 (346)
T PRK10918        200 KGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEESFSNAAKGADWSKTFAQDLTNQKGEDAWPITS  279 (346)
T ss_pred             CCCHHHHHHHHCCCCEEEEEEHHHHHHCCCCEEEEECCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88538999884399806886578885479863788726897758787899999843775533331367898888455000


Q ss_pred             EEEEEEECCC--CCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7899970788--566889999999974987405220277559634899999999999960778
Q gi|254780707|r  285 PLLFYVKRQH--FNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKS  345 (346)
Q Consensus       285 ~ly~yv~~~~--~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~~~~  345 (346)
                      ..|++++.+.  .+..+.+++|++|+|+++++    .+.++||+|||+++++++|++++...+
T Consensus       280 ~Ty~lv~~~~~d~~~~~~v~~F~~~~l~~gq~----~a~~lgYvPLP~~v~~~v~aa~~t~~~  338 (346)
T PRK10918        280 TTFILVHKDQKKPEQGTEVLKFFDWAYKTGAK----QANDLDYASLPDSVVEQVRAAWKTNIK  338 (346)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHCHHH----HHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             01234335679988999999999999832144----466489702999999999999996360


No 3  
>TIGR02136 ptsS_2 phosphate binding protein; InterPro: IPR011862    Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This entry separates members from the phosphate ABC transporter phosphate binding proteins described by IPR005673 from INTERPRO.; GO: 0006810 transport.
Probab=99.92  E-value=4.5e-26  Score=163.86  Aligned_cols=258  Identities=26%  Similarity=0.474  Sum_probs=213.7

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCE
Q ss_conf             79998034258999999999998779807999815762057898852101335301213320247678767624878724
Q gi|254780707|r   27 RIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQ  106 (346)
Q Consensus        27 ~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~  106 (346)
                      .+...||++++|++..|++.|++.+++..+ .++..||+.|+.+++.|.    .|++.++|++.+.|...+.... ....
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~  117 (308)
T TIGR02136        44 TITAVGSTTVAPLAEAAAEEFQKLHPNVSV-TVQGAGSGTGIKALINGT----VDIGNSSRPIKDEEIAKLAQKG-IKLI  117 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EECCCCCCCCHHHHHHHH----HHCCCCCCCCHHHHHHHHHHHC-CCCC
T ss_conf             000122100123566766654321033311-111343221001221001----1001100000035665543201-1000


Q ss_pred             EEEEECCCCEEEECCCC-CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             66652154125541666-54568888888764102555553236730232310011122450354488542357899988
Q gi|254780707|r  107 EVTIGHDGILLVSDRDM-VSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKK  185 (346)
Q Consensus       107 ~~~v~~d~i~i~~n~~~-~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~  185 (346)
                      ..+++.+++..++|..+ +...++..++..++. .       ..+++++|.++++.+++.+|.++.|...|||+..|...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (308)
T TIGR02136       118 ELKVAVDGLAVIVNPKNVPVDDLTVEQLKKIYL-A-------AQGEITNWKEVGGALPNQPIVVVGRNAGSGTRATFEEE  189 (308)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-H-------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             000111011111011112311001344433322-1-------01110111112343322211001233333210111233


Q ss_pred             HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCC--CCCC
Q ss_conf             51345556541011111013660001344431024664021166236777631015321001332001100111--0013
Q gi|254780707|r  186 VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADV--LKLV  263 (346)
Q Consensus       186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~--~~~~  263 (346)
                      ++..........                            ............+..++++++|.++.+...+...  ...+
T Consensus       190 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (308)
T TIGR02136       190 VLGKAKIAPGVN----------------------------TAQESNGAVVSSVSSNPGAIGYLGLGYVTDSKKKLKVVPL  241 (308)
T ss_pred             HHHHHHHHCCHH----------------------------CCCCCCCCEEEEECCCCCCCCHHCCHHHHCCCCCCCHHHH
T ss_conf             320011100000----------------------------0013443112100234221000000000000000000000


Q ss_pred             CCCC---CCCCHHHHCCCCCCCEEEEEEEEECCCCCC-CHHHHHHHHHHHCHHHCCCCCHHHHCCCCCC
Q ss_conf             4457---678955602798750367899970788566-8899999999749874052202775596348
Q gi|254780707|r  264 PIDG---IVPSMGTIVSGLYPISRPLLFYVKRQHFNS-VLGLREYVSFSVSDEMMAPDSQLFQYGLIPI  328 (346)
Q Consensus       264 ~~~~---v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~-~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPL  328 (346)
                      ..++   +.|+.+++.++.|++.|++++|++..+... .+...+|+.+.++...+.  ..+...||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  308 (308)
T TIGR02136       242 KVNGGKAVEPSKENIANGSYPLSRPLFMYVNGKPLKPLNPLVAEFIDFVLSDDTGE--RLVEELGYIPL  308 (308)
T ss_pred             HCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHH--HHHHCCCCCCC
T ss_conf             00232211110112202321000001221000000000134444433210210000--11110012369


No 4  
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.37  E-value=9.3e-10  Score=73.07  Aligned_cols=247  Identities=20%  Similarity=0.257  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHH--HHHHHHCCC--CCCCCEEEE-EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             924899999999--999983142--013767999-803425899999999999877980799981576205789885210
Q gi|254780707|r    1 MRFFFVVLMCFV--VLEVYCGTG--TFARNRIRI-AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGI   75 (346)
Q Consensus         1 Mk~~~~~~~~~~--~l~~~~~~~--~~a~~~I~i-~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~   75 (346)
                      |+++..+++.++  ++.++|...  ....++|++ +.+|...|+ +.+..+|+++| ++++ +++-+||+...+++.+|.
T Consensus         1 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~VfAAaSL~~~l-~~i~~~F~~~~-~~~V-~~~f~gS~~l~~qIe~Ga   77 (258)
T COG0725           1 GKKMKKILALLLLVLLALGCAAGSAAQEAATITVFAAASLTDAL-EEIAKQFEKET-GVKV-EVEFGGSGALARQIEQGA   77 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHH-HHHHHHHHHHH-CCEE-EEEECCHHHHHHHHHCCC
T ss_conf             94268899999999999986156544567409999815668999-99999999987-9879-999613899999997599


Q ss_pred             CCCCCCEEECCCCCCHHHHHHHHHCC-CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             13353012133202476787676248-78724666521541255416665456888888876410255555323673023
Q gi|254780707|r   76 GDDTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKK  154 (346)
Q Consensus        76 ~~~~~dig~ssr~l~~~E~~~~~~~~-~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~  154 (346)
                         ..|+-.|...-..   ....+.+ ...-...+++..-+++++...++.....                         
T Consensus        78 ---~~D~fiSa~~~~~---~~l~~~g~~~~~~~~~fa~n~lvl~~~~~~~~~~~~-------------------------  126 (258)
T COG0725          78 ---PADLFISADDAYM---DKLEDKGLIYADSRIVFAGNRLVLAVPKGSKKKIES-------------------------  126 (258)
T ss_pred             ---CCCEEEECCHHHH---HHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCH-------------------------
T ss_conf             ---8687998888889---999866885667157742574899986887456512-------------------------


Q ss_pred             HHHCCCCCCCCCCEEECC-CCCCC--HHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCH
Q ss_conf             231001112245035448-85423--578999885134555654101111101366000134443102466402116623
Q gi|254780707|r  155 WSEIRPDFPEVRIAIYVP-SGKHG--TREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDY  231 (346)
Q Consensus       155 W~~~~~~lp~~~I~~~~r-~~~SG--T~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  231 (346)
                      |.++.- .++..+.+-.| .+..|  +.+.|+.     ...+.....                         .+...++-
T Consensus       127 ~~~l~~-~~~~~lai~~p~~~P~G~ya~~~l~~-----~g~~~~~~~-------------------------k~v~~~~v  175 (258)
T COG0725         127 LEDLLE-RPDVRLAIGDPKTVPAGKYAKEALEL-----LGLWYTLKD-------------------------KLVLATNV  175 (258)
T ss_pred             HHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHH-----HCHHHHCCC-------------------------CEEECCCH
T ss_conf             988730-87857996488769714999999997-----051453367-------------------------54653657


Q ss_pred             HHHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             67776310153--2100133200110011100134457678955602798750367899970788566889999999974
Q gi|254780707|r  232 TETLARIEVNK--DVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       232 ~~~~~~v~~~~--~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                      .+....+....  .++-|.+......        ..+.+.+-.+..-+   |+.-|.-++.+.   ...+..++|++|++
T Consensus       176 ~~~l~~V~~G~ad~g~vy~sd~~~~~--------~~~~~~~~~~~~~~---Pi~y~iav~~~~---~~~~~A~~f~~fl~  241 (258)
T COG0725         176 RQALAYVETGEADAGFVYVSDALLSK--------KVKIVGVFPEDLHS---PIVYPIAVLKNA---KNPELAKEFVDFLL  241 (258)
T ss_pred             HHHHHHHHCCCCCEEEEEEEHHHHCC--------CCEEEEECCCCCCC---CEEEEEEEECCC---CCHHHHHHHHHHHH
T ss_conf             98999986378777999976334067--------76089973566689---716789997388---98599999999971


Q ss_pred             CHHHCCCCCHHHHCCCCCCC
Q ss_conf             98740522027755963489
Q gi|254780707|r  310 SDEMMAPDSQLFQYGLIPIS  329 (346)
Q Consensus       310 s~~~~~~~~~~~~~GyvPLp  329 (346)
                      |+++|.   ++++.||-|+.
T Consensus       242 s~~a~~---il~~~Gf~~~~  258 (258)
T COG0725         242 SPEAQE---ILEKYGFEPLT  258 (258)
T ss_pred             CHHHHH---HHHHCCCCCCC
T ss_conf             877799---99984998899


No 5  
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=99.27  E-value=1.7e-09  Score=71.66  Aligned_cols=251  Identities=15%  Similarity=0.182  Sum_probs=130.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf             24899999999999983142013767999803425899999999999877980799981576205789885210133530
Q gi|254780707|r    2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTID   81 (346)
Q Consensus         2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~d   81 (346)
                      |+++.+++++.++.+.+.+.....++|++.-++++.+.|+.+++.|+++| ++++ .+.-+|||.=.+|+..|.   -+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~V~aAAsL~~~~~ei~~~Fek~~-g~~v-~~~fgsSg~L~~QI~~GA---p~D   77 (257)
T PRK10677          3 RKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEK-GVDV-VSSFASSSTLARQIEAGA---PAD   77 (257)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH-CCEE-EEEECCHHHHHHHHHCCC---CCC
T ss_conf             28999999999987235533256885999992576899999999998841-9849-999664899999998289---965


Q ss_pred             EE-ECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             12-13320247678767624878724666521541255416665456888888876410255555323673023231001
Q gi|254780707|r   82 IV-NSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP  160 (346)
Q Consensus        82 ig-~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~  160 (346)
                      += .+|...-+ .+.+  ++.+..-....++..-+++++.+.++...+..                   .+..+|.++- 
T Consensus        78 vF~sAd~~~~~-~l~~--~~~i~~~~~~~~a~n~lvli~pk~~~~~~~~i-------------------~~~~d~~~ll-  134 (257)
T PRK10677         78 LFISADQKWMD-YAVD--KKAIDTATRQTLLGNSLVVVAPKASEQKDFTI-------------------DKKTDWTSLL-  134 (257)
T ss_pred             EEEECCHHHHH-HHHH--CCCCCCCCEEEEECCEEEEEEECCCCCCCCCC-------------------CCCCCHHHHC-
T ss_conf             89978757789-9986--77856776456214749999846877786443-------------------4332377742-


Q ss_pred             CCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCC
Q ss_conf             11224503544885423578999885134555654101111101366000134443102466402116623677763101
Q gi|254780707|r  161 DFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV  240 (346)
Q Consensus       161 ~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~  240 (346)
                        ++..|.+-.|.  +-........++.+...+..-.                         ..+...++-....+.+..
T Consensus       135 --~~~riaia~P~--~aP~G~ya~~~L~~~gl~~~l~-------------------------~klv~~~nV~~~l~~v~~  185 (257)
T PRK10677        135 --NGGRLAVGDPD--HVPAGIYAKEALQKLGAWDTLS-------------------------PKLAPAEDVRGALALVER  185 (257)
T ss_pred             --CCCCEEEECCC--CCCCHHHHHHHHHHCCCHHHHC-------------------------CCEEECCCHHHHHHHHHC
T ss_conf             --58808985888--8865799999999767665506-------------------------541325769999999982


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCH
Q ss_conf             5321001332001100111001344576789556027987-503678999707885668899999999749874052202
Q gi|254780707|r  241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQ  319 (346)
Q Consensus       241 ~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~  319 (346)
                      ..--+|++..+-.... ..+..+   .+.|..      .| |+..|.-+ ++..   ..+.+++|++|++|+++|.   +
T Consensus       186 G~adaG~Vy~Sda~~~-~~~~~~---~~~p~~------~~~pi~y~~ai-~~~~---~~~~a~~F~~fl~S~~a~~---I  248 (257)
T PRK10677        186 NEAPLGIVYGSDAVAS-KGVKVV---ATFPED------SHKKVEYPMAI-VEGH---NNATVSAFYDYLKGPQAAE---I  248 (257)
T ss_pred             CCCCEEEEECCHHHCC-CCCEEE---EECCHH------HCCCCEEEEEE-ECCC---CCHHHHHHHHHHCCHHHHH---H
T ss_conf             9987899970002226-886499---987745------38961455899-7599---9999999999977999999---9


Q ss_pred             HHHCCCC
Q ss_conf             7755963
Q gi|254780707|r  320 LFQYGLI  326 (346)
Q Consensus       320 ~~~~Gyv  326 (346)
                      +++.||.
T Consensus       249 l~~~GFt  255 (257)
T PRK10677        249 FKRYGFT  255 (257)
T ss_pred             HHHHCCC
T ss_conf             9982983


No 6  
>PRK04168 hypothetical protein; Provisional
Probab=99.24  E-value=1e-08  Score=67.29  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf             924899999999999983142---01376799980342589999999999987798079998157620578988521013
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG---TFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGD   77 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~---~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~   77 (346)
                      ||+++.++++++++.++.|.+   +....+|++-=+.++..-+..+.+.|+++||++++ ..+..||....+++.++.  
T Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~Vf~AGSL~~pf~ei~~~Fe~~~p~v~v-~~e~~GS~~~ar~Ite~g--   81 (336)
T PRK04168          5 RRKIVIVILLLLALVFLGCVNTSEAEPPGKLKIFHAGSLSVPFEEYEKEFEAYYPNVDV-QREAGGSVACVRKITELG--   81 (336)
T ss_pred             CEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHHCC--
T ss_conf             32203799999999970555777778861599997552589999999999987899659-998473899999999579--


Q ss_pred             CCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf             35301213320247678767624878724666521541255416665
Q gi|254780707|r   78 DTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMV  124 (346)
Q Consensus        78 ~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~  124 (346)
                      ..+|+-+|-.+ +-  +.+..... ..-+.+.++...++++++.+..
T Consensus        82 ~~aDVfaSAD~-~~--i~~ll~p~-~adw~v~FA~N~lViayt~~Sk  124 (336)
T PRK04168         82 KPADILASADY-TL--IPKMMIPE-YADWYVMFATNEIVLAYTDKSK  124 (336)
T ss_pred             CCCCEEEECCH-HH--HHHHHCCC-CCCCEEEECCCEEEEEECCCCC
T ss_conf             99888998985-78--78874644-3341012115538999768882


No 7  
>TIGR00975 3a0107s03 phosphate ABC transporter,  phosphate-binding protein PstS; InterPro: IPR005673    This family represents a sub-group of the phosphate-binding periplasmic proteins, one of the bacterial proteins required for binding-protein-mediated phosphate transport. The accumulation of protein is enhanced under phosphate starvation. ; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport.
Probab=99.21  E-value=1.6e-11  Score=82.82  Aligned_cols=272  Identities=18%  Similarity=0.215  Sum_probs=175.4

Q ss_pred             EEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf             99803425899999999999877980799981576205789885210133530121332024767876762487872466
Q gi|254780707|r   29 RIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEV  108 (346)
Q Consensus        29 ~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~  108 (346)
                      ...|++...|.+..|...|.+.++......++..||+.|+.++..+.    ++++.++.++++ +.......+  .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~--~~~~~   74 (324)
T TIGR00975         2 TGAGSTFPAPLYSKWFADYSKSNPAKVTVNYQGIGSGAGIAQFLAGT----VDFGASDAPLSE-EAAALASAG--GLLQL   74 (324)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC----CCCCCCCHHHHH-HHHHHHHCC--CCCCC
T ss_conf             65421012233332222222101232110112233200122222000----001111002234-455542011--10001


Q ss_pred             EEECCCCEEEECCCCCCC---CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHC-------CCC-CCCCCCEEECCCCCCC
Q ss_conf             652154125541666545---68888888764102555553236730232310-------011-1224503544885423
Q gi|254780707|r  109 TIGHDGILLVSDRDMVSV---SLTVEDLYKALASYLIVDDKVVFNPLKKWSEI-------RPD-FPEVRIAIYVPSGKHG  177 (346)
Q Consensus       109 ~v~~d~i~i~~n~~~~~~---~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~-------~~~-lp~~~I~~~~r~~~SG  177 (346)
                      +.....++..++......   .+....+.           .++.++++.|+++       ... +|..+|.+.+|++.|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (324)
T TIGR00975        75 PTVIGAVVVAYNLPGVSKGELKLDGAVLA-----------KIFLGKIKTWNDPAIAALNPGVKDLPGTAITVVHRSDGSG  143 (324)
T ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCHHH-----------HHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCCC
T ss_conf             00000000000112222110122320010-----------0100110012311233210110112321110000111223


Q ss_pred             HHHHHHHHHCCCCCCCC---CCHHHHHHCCC---CCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             57899988513455565---41011111013---6600013444310246640211662367776310153210013320
Q gi|254780707|r  178 TREVLEKKVLQEGCVRS---RNFSKMRDMFK---YNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLS  251 (346)
Q Consensus       178 T~~~F~~~v~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~  251 (346)
                      ++..|..+.......+.   .......+...   .......+..                    ..+...++.++|....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~  203 (324)
T TIGR00975       144 TTFVFTNYLSKVSPEWKSKVGAGKTVNWPAGDGAVGGKGNDGVS--------------------AAVKQTPGAIGYVELS  203 (324)
T ss_pred             CCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE--------------------EECCCCCCCCCHHHHH
T ss_conf             20000001100010000112233212233322111223333210--------------------0000122210000112


Q ss_pred             HHHHCCCCCCCCC----------------------------CCCCCCCHHHHCCCCCCCEEEEEEEEEC--CC--CCCCH
Q ss_conf             0110011100134----------------------------4576789556027987503678999707--88--56688
Q gi|254780707|r  252 FYKNNADVLKLVP----------------------------IDGIVPSMGTIVSGLYPISRPLLFYVKR--QH--FNSVL  299 (346)
Q Consensus       252 ~~~~~~~~~~~~~----------------------------~~~v~p~~~~i~~g~YPl~r~ly~yv~~--~~--~~~~~  299 (346)
                      +...+......+.                            .+.............||+....+..+..  ..  .....
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (324)
T TIGR00975       204 YAKLNKLSFAALKNSAGKFVLPDAESIAAAAAGAKISGPELKNDLLSLTDAPGAGAYPIVAATYLIVYKKQKDLRPAKAK  283 (324)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             23332111222100023211111002234443321100011111000012334321100012333322101220134455


Q ss_pred             HHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999974987405220277559634899999999999960
Q gi|254780707|r  300 GLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAV  342 (346)
Q Consensus       300 ~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~  342 (346)
                      ..+.|+.|.+...++    .....+|+++|.......+..+..
T Consensus       284 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  322 (324)
T TIGR00975       284 ALKAFLTWALTNGQK----GADDLGYIPLPPSVVKRVRTAVNT  322 (324)
T ss_pred             HHHHHHHHHHCCCCH----HHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             555443321101000----100112111211233332212100


No 8  
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.13  E-value=8.1e-09  Score=67.82  Aligned_cols=276  Identities=10%  Similarity=0.055  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH----HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCE
Q ss_conf             99999999998314201376799980342589----99999999998779807999815762057898852101335301
Q gi|254780707|r    7 VLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP----YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDI   82 (346)
Q Consensus         7 ~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P----~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~di   82 (346)
                      +..+..++....+.++.|+.++.+-.|..+.+    +++.+...|.+++ |+++. +...|||.=+.++..-..+-+.|+
T Consensus        17 ~~~~~~~~~~~~~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~t-GikV~-~v~~~sge~laRl~aEk~nPqaDV   94 (367)
T TIGR03227        17 LAAGAAALLQGAAAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAE-GIKVN-IVEAGGGEVVERAAKEKGNPKADV   94 (367)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCEEE-EEECCHHHHHHHHHHCCCCCCCEE
T ss_conf             9999999986423555458659999646643444346888768888866-98389-998977999999995227997209


Q ss_pred             EECCCCCCHHHHHH--HHH------C------CCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             21332024767876--762------4------878724666521541255416665456888888876410255555323
Q gi|254780707|r   83 VNSSRKITQNELDE--CKK------H------GVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVV  148 (346)
Q Consensus        83 g~ssr~l~~~E~~~--~~~------~------~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~  148 (346)
                      .....+.-.+-.+.  +..      .      ...+-.-.++..+.++++||.+..                        
T Consensus        95 v~~~d~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~------------------------  150 (367)
T TIGR03227        95 IVTAPPFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLL------------------------  150 (367)
T ss_pred             EEECCHHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHH------------------------
T ss_conf             99785799999978895627896645577766377983898855579999985770------------------------


Q ss_pred             CCCHHHHHHCCCCCCCCCCEEECCCC-CCCHHHHHH-HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEE
Q ss_conf             67302323100111224503544885-423578999-8851345556541011111013660001344431024664021
Q gi|254780707|r  149 FNPLKKWSEIRPDFPEVRIAIYVPSG-KHGTREVLE-KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIE  226 (346)
Q Consensus       149 ~g~i~~W~~~~~~lp~~~I~~~~r~~-~SGT~~~F~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  226 (346)
                      ..+.+.|+|+-.  |.-+-++..+++ .|++-..+. ..+..-+.. ..........     ..            +.+.
T Consensus       151 k~~PkSW~DL~d--P~ykgkI~~~dP~tS~~g~~~l~~~~~~~G~e-D~a~~~~~~L-----~~------------N~~~  210 (367)
T TIGR03227       151 KSAPASFADLLD--ADFKGKLAYSNPAQAADGMAVIILAFALFGSE-DAAFAYLAKL-----EA------------NNKF  210 (367)
T ss_pred             CCCCCCHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHH-----HH------------CCCE
T ss_conf             579988998728--53378289528776617999999999970985-3889999988-----74------------4867


Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE----EEECCCCCCCHHHH
Q ss_conf             16623677763101532100133200110011100134457678955602798750367899----97078856688999
Q gi|254780707|r  227 VDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLF----YVKRQHFNSVLGLR  302 (346)
Q Consensus       227 ~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~----yv~~~~~~~~~~~~  302 (346)
                      +......+...+......++...+.+..... .-...+++.+.|....    .+|.......    ++++  ....+..+
T Consensus       211 ~~~s~~~~~~~~~~GE~~va~g~~~~~~~~~-~~~g~~v~~v~P~~~~----g~~~g~~~i~~~i~ivKg--a~n~e~Ak  283 (367)
T TIGR03227       211 HSAGTGKLNALLNKGEIAVANGDLQMDLADA-EHGGLNIKIFFPAADA----GEPPSAFAIPYAIGLVKG--APNQDAGK  283 (367)
T ss_pred             ECCCCHHHHHHHHCCCEEEEEEECCHHHHHH-HHCCCCCEEEEECCCC----CCCCCEEEEEEHHHHHCC--CCCHHHHH
T ss_conf             2478179999985786789952020436777-6279970289546777----888734875220346449--99989999


Q ss_pred             HHHHHHHCHHHCCCCCHHHHCCC-------CCCCHHHHHHHHH
Q ss_conf             99999749874052202775596-------3489999999999
Q gi|254780707|r  303 EYVSFSVSDEMMAPDSQLFQYGL-------IPISNEERKSVRD  338 (346)
Q Consensus       303 ~Fl~~~ls~~~~~~~~~~~~~Gy-------vPLp~~~~~~~~~  338 (346)
                      +|++|+||.++|.   .+.+.+|       |+||++..+....
T Consensus       284 kfidflLS~e~Q~---~~a~~~~~~Pv~~~v~l~~~~~~~~~~  323 (367)
T TIGR03227       284 KLIDFLLSADAQA---KVPDLSFGIPGRSDVPLSDEHGEAAKA  323 (367)
T ss_pred             HHHHHHCCHHHHH---HHHHHCCCCCCCCCCCCCHHHHHHCCC
T ss_conf             9999972999999---999860167677887698355542213


No 9  
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.04  E-value=5.2e-08  Score=63.34  Aligned_cols=261  Identities=13%  Similarity=0.043  Sum_probs=120.2

Q ss_pred             HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf             99983142013767999803425899999999999877980799981576205789885210133530121332024767
Q gi|254780707|r   14 LEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNE   93 (346)
Q Consensus        14 l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E   93 (346)
                      ..+++++++.+.+.|++--|. ...++..+.+.|+++|||++|. +...+||.-+..+..-..+.+.|+.-......-.+
T Consensus        10 ~~~~~a~aa~~~~~l~VYss~-~~~~~~~i~~~Fek~~tgIkV~-~v~~~tgel~~rl~aEk~~p~aDV~~g~~~~~~~~   87 (334)
T TIGR03261        10 SLFFSACNSKANTELTVYTAI-EDELIAKYKDAFEKVNPDIKIN-WVRDSTGIITAKLLAEKNNPQADVVWGLAASSLAL   87 (334)
T ss_pred             HHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf             999983103029959999699-8889999999999777994899-99897299999999645799865998456578999


Q ss_pred             H--------------HHHHHCCCC---CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             8--------------767624878---72466652154125541666545688888887641025555532367302323
Q gi|254780707|r   94 L--------------DECKKHGVS---DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWS  156 (346)
Q Consensus        94 ~--------------~~~~~~~~~---~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~  156 (346)
                      +              +........   ...-+.+.....++++|.+....                    --.-..+.|.
T Consensus        88 ~~~~gll~~y~~~~~~~l~~~~~d~~~~~~~~g~~~~~~~i~yN~~~~~~--------------------~~~p~P~sw~  147 (334)
T TIGR03261        88 LDKEGMLKPYKPKGLDALNPKFRDAKNPPHWVGMDAWMAAICFNTVEAKK--------------------KGLPKPTSWE  147 (334)
T ss_pred             HHHCCCCCCCCCCCHHHCCHHHCCCCCCCEEEEEEEEEEEEEEEHHHCCC--------------------CCCCCCCCHH
T ss_conf             88604315777530544788652978885168875246789974444042--------------------5899999999


Q ss_pred             HCCCCCCCCCCEEECC-CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHH
Q ss_conf             1001112245035448-854235789998851345556541011111013660001344431024664021166236777
Q gi|254780707|r  157 EIRPDFPEVRIAIYVP-SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETL  235 (346)
Q Consensus       157 ~~~~~lp~~~I~~~~r-~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  235 (346)
                      |+-.  |.-+=++..+ +..|||...|...++......    ..+.....  ...+            ...+........
T Consensus       148 DL~d--p~ykg~i~~~~p~~sg~~~~~l~~~~~~~G~d----~g~~~l~~--l~~N------------~~~~~~~~~~~~  207 (334)
T TIGR03261       148 DLTK--PEYKGHIVMPNPASSGTGFLDVSAWLQMMGED----KGWDYMDK--LHKN------------IAVYTHSGSKPC  207 (334)
T ss_pred             HHCC--HHHCCEEECCCCCCCHHHHHHHHHHHHHHCHH----HHHHHHHH--HHHH------------HCCCCCCCCHHH
T ss_conf             9709--47489587348886338999999999973528----89999999--9863------------241677763888


Q ss_pred             HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCC
Q ss_conf             63101532100133200110011100134457678955602798750367899970788566889999999974987405
Q gi|254780707|r  236 ARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMA  315 (346)
Q Consensus       236 ~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~  315 (346)
                      ..+......||..-.....  ...-...++..+.|.     +|.+-.....- +++..  ...++.++|++|+||+++|.
T Consensus       208 ~~v~~Ge~~ig~~~~~~~~--~~~~~g~pv~~v~P~-----eG~~~~~~~~~-Ivk~a--~n~~~Ak~FidfllS~e~Q~  277 (334)
T TIGR03261       208 KLAGMGEFPIGISMAYRAL--KEKKKGAPIDVVFPK-----EGLGWDIEATA-IIKGS--KNNDAAKKLVDWSISDEAME  277 (334)
T ss_pred             HHHHCCCEEEEEEECCHHH--HHHHCCCCEEEEECC-----CCCEEEEEEEE-EECCC--CCHHHHHHHHHHHCCHHHHH
T ss_conf             9986598579997354578--876438973389458-----98478773588-88799--89899999999976999999


Q ss_pred             CCCHHHHCCCCCCC
Q ss_conf             22027755963489
Q gi|254780707|r  316 PDSQLFQYGLIPIS  329 (346)
Q Consensus       316 ~~~~~~~~GyvPLp  329 (346)
                         .+.+..++|+.
T Consensus       278 ---~~a~~~~~p~~  288 (334)
T TIGR03261       278 ---LYAKNYAVVAT  288 (334)
T ss_pred             ---HHHHCCEECCC
T ss_conf             ---99964903468


No 10 
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=98.85  E-value=3e-07  Score=59.14  Aligned_cols=263  Identities=11%  Similarity=0.076  Sum_probs=121.5

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH----HHHCCCCEEEEEEC-CCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf             99999998314201376799980342589999999999----98779807999815-76205789885210133530121
Q gi|254780707|r   10 CFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF----SEYFPEFKTPFVES-GGSSVGLKEFCRGIGDDTIDIVN   84 (346)
Q Consensus        10 ~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y----~~~~~~~~~~~~~~-~GSg~Gi~~~~~G~~~~~~dig~   84 (346)
                      +.+++++++.+.+.+.+-++.+ -+....+++..-..|    ++++++..+.+-|+ +|||.=-+.+++|...+.+.++.
T Consensus        11 ~~~~~~~~~~g~a~~~~LlnVS-Yd~tRely~~~n~~F~~~Wk~~~~g~~V~i~qShGGSg~QARaVi~GL~ADVVtlal   89 (338)
T PRK10852         11 LALVASLLLAGHAQATELLNSS-YDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQ   89 (338)
T ss_pred             HHHHHHHHHCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf             8999999973787772688513-054799999998999999997568961899854787605789984787544687525


Q ss_pred             CCCC--------CCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             3320--------24767876762487872466652154125541666545688888887641025555532367302323
Q gi|254780707|r   85 SSRK--------ITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWS  156 (346)
Q Consensus        85 ssr~--------l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~  156 (346)
                      .+.-        |-+..+++...+      .-..-...+++++.+.||.                         .|+.|.
T Consensus        90 ~~Did~l~~~g~LI~~dW~~~lP~------ns~pytStivFlVRkGNPK-------------------------~IkdW~  138 (338)
T PRK10852         90 VTDVQILHDKGKLIPADWQSRLPN------NSSPFYSTMGFLVRKGNPK-------------------------NIHDWN  138 (338)
T ss_pred             CCCHHHHHHCCCCCCCCHHHHCCC------CCCCEEEEEEEEEECCCCC-------------------------CCCCHH
T ss_conf             432488986278678054653899------9964466799998079956-------------------------687757


Q ss_pred             HCCCCCCCCCCEEECCCCC--CCHHHHHHH-H--HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCH
Q ss_conf             1001112245035448854--235789998-8--5134555654101111101366000134443102466402116623
Q gi|254780707|r  157 EIRPDFPEVRIAIYVPSGK--HGTREVLEK-K--VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDY  231 (346)
Q Consensus       157 ~~~~~lp~~~I~~~~r~~~--SGT~~~F~~-~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  231 (346)
                      |+-.  |  .+.++.|++.  .|.+-+|.. +  +.....   ++.          .+....+..-.++-.  +-..+.-
T Consensus       139 DL~k--~--gV~VItPNPKTSGgaRwnyLAAwg~a~~~~g---g~e----------~~a~~fv~~l~~NVp--Vld~gaR  199 (338)
T PRK10852        139 DLVR--S--DVKLIFPNPKTSGNARYTYLAAWGAADKADG---GDK----------AKTEQFMTQFLKNVE--VFDTGGR  199 (338)
T ss_pred             HHCC--C--CCEEECCCCCCCCCHHHHHHHHHHHHHHHCC---CCH----------HHHHHHHHHHHHCCC--CCCCCCH
T ss_conf             7464--8--9789757998884076999999999998649---998----------999999999983685--1589716


Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE--------EEEE--CCCCCCCHHH
Q ss_conf             67776310153210013320011001110013445767895560279875036789--------9970--7885668899
Q gi|254780707|r  232 TETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLL--------FYVK--RQHFNSVLGL  301 (346)
Q Consensus       232 ~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly--------~yv~--~~~~~~~~~~  301 (346)
                      .+...-   ....+|-+=+.|..+.....+..            ..+.|.++-|-.        -.|.  .+..++.+..
T Consensus       200 ~AT~tF---~~rg~GDVLl~~ENEa~l~~~~~------------g~~~~eiV~Ps~sIlae~pVAvVDk~vdk~GTr~vA  264 (338)
T PRK10852        200 GATTTF---AERGLGDVLISFESEVNNIRKQY------------EAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAA  264 (338)
T ss_pred             HHHHHH---HHCCCCCEEEEHHHHHHHHHHHH------------CCCCCEEECCCCCEEECCCEEEEEECCCCCCCHHHH
T ss_conf             788999---87386756752167899999960------------899714988997566069748986012345889999


Q ss_pred             HHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999997498740522027755963489999999999996
Q gi|254780707|r  302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA  341 (346)
Q Consensus       302 ~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~  341 (346)
                      ++||+|..|+++|.   ++.++||=|..+++.++..+.+.
T Consensus       265 ~AyL~yLyS~eaQ~---i~Ak~~yRP~~~~v~~~~~~~FP  301 (338)
T PRK10852        265 KAYLNWLYSPQAQT---IITDYYYRVNNPEVMDKLKDKFP  301 (338)
T ss_pred             HHHHHHHCCHHHHH---HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf             99999865989999---99980899899789877645499


No 11 
>PRK10752 sulfate transporter subunit; Provisional
Probab=98.78  E-value=3.9e-07  Score=58.47  Aligned_cols=47  Identities=13%  Similarity=0.034  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             88566889999999974987405220277559634899999999999960
Q gi|254780707|r  293 QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAV  342 (346)
Q Consensus       293 ~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~  342 (346)
                      +..++.+..++||+|..|+++|.   ++.++||=|..+++.++..+.+..
T Consensus       250 dk~GTr~~A~ayl~fLys~eaQ~---i~Ak~~yRP~~~~v~~~~~~~FP~  296 (329)
T PRK10752        250 EKKGTREVAEAYLKYLYSPEGQE---IAAKNYYRPRDAEVAKKYENAFPK  296 (329)
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHH---HHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf             66688999999999865979999---999808898997898876543998


No 12 
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.62  E-value=3.6e-06  Score=53.13  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=117.5

Q ss_pred             CEEEEEECCHHHHHHHHHHHHH----HHHCCCCEEEEEE-CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC
Q ss_conf             6799980342589999999999----9877980799981-5762057898852101335301213320247678767624
Q gi|254780707|r   26 NRIRIAGSSTLFPYSKIIAENF----SEYFPEFKTPFVE-SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH  100 (346)
Q Consensus        26 ~~I~i~GSst~~P~~~~~a~~y----~~~~~~~~~~~~~-~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~  100 (346)
                      .+|...-=.-.-++++..-..|    +.++.+. +.+.+ -+|||.=-+.+++|...+.+.++.++.-   +.+++....
T Consensus        38 ~tLlnVSYd~tre~y~~~n~aF~~~WkaetG~~-Vti~qShGGSgkQaRsViDGl~ADVVtlal~~Di---d~i~~~g~l  113 (348)
T COG1613          38 TTLLNVSYDPTRELYKEYNPAFAKYWKAETGET-VTIQQSHGGSGKQARSVIDGLEADVVTLALAYDI---DAIAKAGGL  113 (348)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHHHCCCCCCCEEEEEHHHHH---HHHHHHCCC
T ss_conf             258885215658889998899999988731983-5999657876203576606753324664113118---999972687


Q ss_pred             CCCC----CE--EEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf             8787----24--66652154125541666545688888887641025555532367302323100111224503544885
Q gi|254780707|r  101 GVSD----IQ--EVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSG  174 (346)
Q Consensus       101 ~~~~----~~--~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~  174 (346)
                      ..++    +.  .+| -...|++++.+.||.                         .|..|+|+-.    ..+.++.|++
T Consensus       114 i~~dW~~rlp~ns~P-ytStivFlVRkGNPK-------------------------~I~DW~DL~k----~gV~VItpNP  163 (348)
T COG1613         114 IDKDWQKRLPNNSAP-YTSTIVFLVRKGNPK-------------------------QIRDWDDLVK----PGVQVITPNP  163 (348)
T ss_pred             CCCCHHHHCCCCCCC-CCCEEEEEEECCCCC-------------------------CCCCHHHHCC----CCCEEECCCC
T ss_conf             894657648699877-330699999369965-------------------------5675577465----8867976899


Q ss_pred             CC--CHHHHHHH---HHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             42--35789998---85134555654101111101366000134443102466402116623677763101532100133
Q gi|254780707|r  175 KH--GTREVLEK---KVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVG  249 (346)
Q Consensus       175 ~S--GT~~~F~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~  249 (346)
                      .+  |.+-+|..   +.+.. +.  ++.          .+....+..-..+.+  +-..+.-.+...   =....||-+-
T Consensus       164 KTSGgARWN~Laawa~a~~~-~~--gde----------aka~~fV~~L~~nvp--vld~gaRgAT~t---F~qrgiGDVL  225 (348)
T COG1613         164 KTSGGARWNYLAAWAYALKT-NG--GDE----------AKAKDFVGKLYKNVP--VLDTGARGATTT---FVQRGIGDVL  225 (348)
T ss_pred             CCCCCHHHHHHHHHHHHHHC-CC--CCH----------HHHHHHHHHHHHCCC--CCCCCCCHHHHH---HHHCCCCCEE
T ss_conf             88765227889998998714-79--988----------999999999984683--245885212578---8863866478


Q ss_pred             CCHHHHCCCCCCC---CCCCCCCCCHHHHCCCCCCCEEEEEEEE--ECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCC
Q ss_conf             2001100111001---3445767895560279875036789997--0788566889999999974987405220277559
Q gi|254780707|r  250 LSFYKNNADVLKL---VPIDGIVPSMGTIVSGLYPISRPLLFYV--KRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYG  324 (346)
Q Consensus       250 ~~~~~~~~~~~~~---~~~~~v~p~~~~i~~g~YPl~r~ly~yv--~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~G  324 (346)
                      ++|..+.......   -..+-|.|+ .+|.. .=|++     .|  +-+..++.+...+|++|..|+++|.   +..+++
T Consensus       226 i~wENEA~la~~e~g~~~feiV~Ps-~si~a-EpPVA-----VVd~~vdkkgtr~vAeAyl~yLys~~gQ~---i~Ak~~  295 (348)
T COG1613         226 IAWENEALLALNELGGDKFEIVTPS-VSILA-EPPVA-----VVDKNVDKKGTRKVAEAYLKYLYSPEGQE---IAAKHY  295 (348)
T ss_pred             EEECHHHHHHHHHHCCCCCCEECCC-EEEEE-CCCEE-----EEECCCCCCCCHHHHHHHHHHHCCHHHHH---HHHHHC
T ss_conf             8724188887997468876687686-02660-69747-----87511233356899999998755838889---999827


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             63489999999999996
Q gi|254780707|r  325 LIPISNEERKSVRDSIA  341 (346)
Q Consensus       325 yvPLp~~~~~~~~~~~~  341 (346)
                      |=|..+++.++....+-
T Consensus       296 yRP~~p~v~a~~~~~FP  312 (348)
T COG1613         296 YRPRDPEVAAKFADQFP  312 (348)
T ss_pred             CCCCCHHHHHHHHHHCC
T ss_conf             78898788877786489


No 13 
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=98.43  E-value=1.8e-05  Score=49.20  Aligned_cols=207  Identities=13%  Similarity=0.089  Sum_probs=124.2

Q ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             37679998034258-99999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ...+|+|+.+.++. .++..+...|.+.||++.+. +....+..-++.+.+|.    +|||.......+. ..       
T Consensus        93 ~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~-~~-------  159 (307)
T CHL00180         93 QGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQ-LQVHSTRRIAWSVANGQ----IDLAIIGGEVPTE-LK-------  159 (307)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCC-CC-------
T ss_conf             25860101040666664358899999988899727-89779999999998798----0099975778866-67-------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                      ..+...++..+.++++++++.|...                      .+...|.|+.    +  ...+.+..+++++..+
T Consensus       160 ~~l~~~~l~~~~~~lv~~~~hpla~----------------------~~~v~~~dL~----~--~~~i~~~~~~~~~~~~  211 (307)
T CHL00180        160 DNLQVTPYAEDELALILPKSHPFAK----------------------LKKIQKEDLY----R--LRFIALDSQSTIRKVI  211 (307)
T ss_pred             CCEEEEEEECCCEEEEECCCCHHHC----------------------CCCCCHHHHH----C--CCEEEECCCCCHHHHH
T ss_conf             8549999432427999738980223----------------------9999999981----7--9848717999689999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CCC
Q ss_conf             988513455565410111110136600013444310246640211662367776310153210013320011001--110
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DVL  260 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~~  260 (346)
                      .+.+...+-....                          -......++...+ ........+|++++...+....  ..+
T Consensus       212 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l-~~~v~~g~Gia~lP~~~v~~~~~~g~l  264 (307)
T CHL00180        212 DNILIQNGIDSSR--------------------------FKIEMELNSIEAI-KNAVQSGLGAAFVSVSAIEKELELGTL  264 (307)
T ss_pred             HHHHHHCCCCCCC--------------------------CEEEEEECCHHHH-HHHHHHCCEEEECCHHHHHHHHHCCCE
T ss_conf             9999976998455--------------------------4279997809999-999993994998259999989877988


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             013445767895560279875036789997078856688999999997498
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
                      ..++.            ...++.|.+|++.++ +....++++.|++|+++-
T Consensus       265 ~~~~~------------~~~~~~r~i~lv~~~-~r~~s~a~~~F~~~l~~~  302 (307)
T CHL00180        265 HWAKI------------ENITIKRTLSIITNP-NRYRSKAAETFSKEILTL  302 (307)
T ss_pred             EEEEC------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf             99978------------999850499999979-597799999999999985


No 14 
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=98.40  E-value=4.5e-05  Score=46.97  Aligned_cols=201  Identities=12%  Similarity=0.146  Sum_probs=117.1

Q ss_pred             CCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             137679998034258-9999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ..+++|+|+-+.+.. -++..+...|.+.||++++. +....+..-.+.+.+|.    +|||....+..+.+        
T Consensus        88 ~~~G~l~ig~~~~~~~~~l~~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~--------  154 (292)
T PRK11242         88 LSRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLT-IREMPQERIEALLADDE----LDVGIAFAPVHSPE--------  154 (292)
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----CCEEEEECCCCCCC--------
T ss_conf             777658630245778887389988888648897348-99768899999986798----55799836888877--------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                         +...++..+.++++++++.+..+.                     .+...|.|+    .+.|...  ++.+++++..
T Consensus       155 ---l~~~~l~~~~~~~v~~~~h~la~~---------------------~~~is~~~L----~~~~~i~--~~~~~~~~~~  204 (292)
T PRK11242        155 ---IEAQPLFTETLALVVGRTHPLAAR---------------------RKPLTLDEL----ADEPLVL--LSAEFATREQ  204 (292)
T ss_pred             ---CEEEEECCCEEEEEEECCCHHHHC---------------------CCCCCHHHH----CCCCEEE--ECCCCCHHHH
T ss_conf             ---256542045079999089804227---------------------999999998----1899899--6799857999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK  261 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~  261 (346)
                      +.+.....+-..                             ...-..++...+...+... .++++++-.... ....+.
T Consensus       205 ~~~~~~~~~i~~-----------------------------~~~~~~~~~~~~~~~V~~g-~Gi~ilP~~~~~-~~~~l~  253 (292)
T PRK11242        205 IDRYFRRHGITP-----------------------------RVAIEANSISAVLEIVRRG-RLATLLPAAIAR-EHDDLC  253 (292)
T ss_pred             HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHHC-CEEEEEHHHHHH-HCCCEE
T ss_conf             999999769998-----------------------------5367538899999999979-969970289860-089989


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             1344576789556027987503678999707885668899999999749
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      .++++.            -.+.|+++++.++ +....++++.|++|+..
T Consensus       254 ~i~l~~------------~~~~r~i~lv~~k-~~~~s~~~~~Fid~l~e  289 (292)
T PRK11242        254 AVALDP------------PLPQRTAALLRRK-GAYRSAAARAFIELALE  289 (292)
T ss_pred             EEECCC------------CCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf             998989------------9870399999989-39889999999999986


No 15 
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=98.37  E-value=4.9e-05  Score=46.80  Aligned_cols=198  Identities=15%  Similarity=0.126  Sum_probs=116.5

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ....++|+.+.++.. ++..+...|.+.||++.+. +....+..-++.+.+|.    +|+|..+.+..+.+         
T Consensus        87 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~---------  152 (291)
T PRK10837         87 DNGAIRIYASSTIGNYILPAMIARYRHDYPQLPLE-LSVGNSQDVIQAVLDFR----VDIGLIEGPCHSTE---------  152 (291)
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCC----CCEEEECCCCCCCC---------
T ss_conf             88629999617999999999999999648993599-99888899999998088----41667417889987---------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                        +...++..+.++++..++.+...                      ++ ..|.|+    .+.|  .+.++.+++++..+
T Consensus       153 --l~~~~l~~~~~~~v~~p~~~l~~----------------------~~-i~~~~l----~~~~--~i~~~~~~~~r~~~  201 (291)
T PRK10837        153 --IISEPWLEDELVVFAAPDSPLAR----------------------GP-VTLEQL----AAAP--WILRERGSGTREIV  201 (291)
T ss_pred             --EEEEEEECCCEEEEECCCCHHHC----------------------CC-CCHHHH----HCCC--EEEECCCCCHHHHH
T ss_conf             --18999441418999878866537----------------------99-998998----0798--79944998689999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC--CC
Q ss_conf             9885134555654101111101366000134443102466402116623677763101532100133200110011--10
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD--VL  260 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~--~~  260 (346)
                      ............                             ..-..++...+...+ ....+|++++...+.....  .+
T Consensus       202 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~v-~~G~Gia~lp~~~v~~~l~~g~L  251 (291)
T PRK10837        202 DYLLLSHLPRFE-----------------------------MAMELGNSEAIKHAV-RHGLGISCLSRRVIADQLQAGTL  251 (291)
T ss_pred             HHHHHHCCCCCC-----------------------------EEEECCCHHHHHHHH-HHCCCEEECCHHHHHHHHHCCCE
T ss_conf             999985488653-----------------------------013129799999999-95991897249999999878997


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             0134457678955602798750367899970788566889999999974
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                      ..+..            ..-++.|++|++..+ +....++++.|++|+-
T Consensus       252 ~~l~~------------~~~~~~~~~~lv~~k-~~~ls~~~~~Fidfl~  287 (291)
T PRK10837        252 VEVAV------------PLPRLMRTLWRIHHR-QKHLSNALQRFLSYCQ  287 (291)
T ss_pred             EEEEC------------CCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf             99707------------888861279999989-7865999999999986


No 16 
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=98.32  E-value=0.00017  Score=43.75  Aligned_cols=246  Identities=17%  Similarity=0.202  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             92489999999999998314201376799980342589999999999987798079998157620578988521013353
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTI   80 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~   80 (346)
                      ||+..++++.+++.+   ++.  +-..|+.-|-.-+.+....+|+.|.+++. .++ ++..+-..+=.....   .+--+
T Consensus         1 Mk~~~~i~~~~~La~---s~~--~~adinlYGpGGPhtaL~~vA~~~~ektg-~kV-nvt~GPq~tW~~kAk---knADi   70 (252)
T COG4588           1 MKKAVLILLIFLLAF---SSA--ANADINLYGPGGPHTALKDVAKKYEEKTG-IKV-NVTAGPQATWNEKAK---KNADI   70 (252)
T ss_pred             CCHHHHHHHHHHHHH---HHH--HCCEEEEECCCCCCHHHHHHHHHHHHHHC-EEE-EEECCCCCHHHHHHH---CCCCE
T ss_conf             933688999999972---464--04517876699986789999999878748-079-994188610445641---36745


Q ss_pred             CEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             01213320247678767624878724666521541255416665456888888876410255555323673023231001
Q gi|254780707|r   81 DIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP  160 (346)
Q Consensus        81 dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~  160 (346)
                      =||+|...+.+- .+.. ....+....-|+-.-.-++.+.+.||......++|.+                         
T Consensus        71 lfgaseqsalai-a~~~-~~~fs~~~i~ply~R~aiIlvkkgNPknIk~~eDll~-------------------------  123 (252)
T COG4588          71 LFGASEQSALAI-AEDH-KDSFSEKNIQPLYLRPAIILVKKGNPKNIKGFEDLLK-------------------------  123 (252)
T ss_pred             EECCCHHHHHHH-HHHC-CCCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHC-------------------------
T ss_conf             641648889999-9856-3335520253135402179962799544456888705-------------------------


Q ss_pred             CCCCCCCEEECC---CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHH
Q ss_conf             112245035448---85423578999885134555654101111101366000134443102466402116623677763
Q gi|254780707|r  161 DFPEVRIAIYVP---SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLAR  237 (346)
Q Consensus       161 ~lp~~~I~~~~r---~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  237 (346)
                        |...|.+.--   +..|| +.++++.+...+..                    ......+.  ..+.+..++.+....
T Consensus       124 --~gi~ivV~dGaG~sntsg-tgvwED~agr~~~i--------------------e~v~afR~--NI~~fapnSgaArka  178 (252)
T COG4588         124 --PGIGIVVNDGAGVSNTSG-TGVWEDIAGRKGNI--------------------ETVAAFRK--NIVAFAPNSGAARKA  178 (252)
T ss_pred             --CCCEEEEECCCCCCCCCC-CEEHHHHHCCCCCH--------------------HHHHHHHH--CEEEECCCCCHHHHH
T ss_conf             --786299837976447777-22048654101148--------------------89999885--238974687048999


Q ss_pred             HCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCC
Q ss_conf             10153210013320-01100111001344576789556027987503678999707885668899999999749874052
Q gi|254780707|r  238 IEVNKDVFGFVGLS-FYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAP  316 (346)
Q Consensus       238 v~~~~~~igy~~~~-~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~  316 (346)
                      ..+.+++-...-.. +..+|.+...     .|.      .+..|-|.|.+.+...++   ..+..++|++|+.|+|+|. 
T Consensus       179 f~~~~~aDawItW~dWa~snpdig~-----~v~------~~~d~vIyRd~nv~~~~~---a~~ea~~F~dyl~S~EAq~-  243 (252)
T COG4588         179 FENQPDADAWITWADWAKSNPDIGD-----AVE------IEKDYVIYRDFNVALAKD---ANKEARDFADYLQSDEAQK-  243 (252)
T ss_pred             HHCCCCCCEEEEECCHHHHCCCHHC-----EEE------CCCCEEEEEECCEEECCC---CCHHHHHHHHHHHHHHHHH-
T ss_conf             8549998558870132330985010-----045------166617754020343689---9978999999972177899-


Q ss_pred             CCHHHHCCC
Q ss_conf             202775596
Q gi|254780707|r  317 DSQLFQYGL  325 (346)
Q Consensus       317 ~~~~~~~Gy  325 (346)
                        +....|.
T Consensus       244 --ifkkygW  250 (252)
T COG4588         244 --IFKKYGW  250 (252)
T ss_pred             --HHHHHCC
T ss_conf             --9986076


No 17 
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=98.21  E-value=0.00031  Score=42.29  Aligned_cols=201  Identities=12%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ....++|+-+.+... ++......|.+.||++++. +....+..-...+.+|.    +||+....++.+.          
T Consensus        88 ~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~----------  152 (296)
T PRK09906         88 EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIE-LVSLINTQQEEKLRRGE----LDVGFMRHPVYSD----------  152 (296)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC----------
T ss_conf             77138832122569999999999987408986348-99758089999998699----7679873688998----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                       .+...++..+.+++++..+.|....                      +-..|.|+    .+.+.....+..++..+..+
T Consensus       153 -~l~~~~l~~~~~~~~~~~~hpla~~----------------------~~i~~~dl----~~~~~i~~~~~~~~~~~~~~  205 (296)
T PRK09906        153 -EIDYLELLDEPLVVVLPVDHPLAHE----------------------KEITAAQL----DGVNFISPDPAQSGSLAPII  205 (296)
T ss_pred             -CEEEEEEECCEEEEEEECCCCCCCC----------------------CCCCHHHH----CCCCEEEECCCCCCCHHHHH
T ss_conf             -8189985046079998289810059----------------------99899997----59987963665476099999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL  262 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~  262 (346)
                      .++....+...                             ..+...++...+.+.+.. ..+|++++..........+..
T Consensus       206 ~~~~~~~g~~p-----------------------------~~~~~~~~~~~~~~~v~~-G~Gi~~lP~~~~~~~~~~l~~  255 (296)
T PRK09906        206 KAWFAQHNSQP-----------------------------NIVQVATNILVTMNLVGM-GLGCTIIPGYMNNFNTGQVVF  255 (296)
T ss_pred             HHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCEEEECHHHHHHHCCCCEEE
T ss_conf             99999779997-----------------------------469998989999999994-989998458773106899999


Q ss_pred             CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             344576789556027987503678999707885668899999999749
Q gi|254780707|r  263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      .++           .+ .+..+++|++.++.  ...|++++|++|+-.
T Consensus       256 ~pl-----------~~-~~~~~~~~l~~r~~--~~spa~~~Fi~~l~e  289 (296)
T PRK09906        256 RPL-----------AG-NVPSIALLMAWKKG--EMKPALRDFIAIVQE  289 (296)
T ss_pred             EEC-----------CC-CCCEEEEEEEECCC--CCCHHHHHHHHHHHH
T ss_conf             988-----------99-98702899998799--999999999999999


No 18 
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=98.07  E-value=0.00047  Score=41.32  Aligned_cols=196  Identities=15%  Similarity=0.198  Sum_probs=112.1

Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             01376799980342589999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   22 TFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        22 ~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      .....+|+|+.+ ... ++..+..+|.+.||++.+. +....+..-+..+.+|.    +|++....+..+.+        
T Consensus        83 ~~~~g~l~ig~~-~~~-~l~~~l~~f~~~~P~v~i~-i~~~~~~~~~~~L~~~~----~Di~i~~~~~~~~~--------  147 (279)
T TIGR03339        83 ALREGSLRIAAT-APY-YVLDLVARFRQRYPGIEVS-VRIGNSQEVLQALQSYR----VDVAVSSEVVDDPR--------  147 (279)
T ss_pred             CCCCCEEEECCC-HHH-HHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCCC--------
T ss_conf             787451686175-177-8999999999858986057-89558087775402596----58999727889998--------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                         +...++..+.++++++++.+......                      ..|.++.    +.|.  +.++.++.++..
T Consensus       148 ---~~~~~l~~~~~~~~~~~~~~la~~~~----------------------i~~~~l~----~~~~--i~~~~~~~~~~~  196 (279)
T TIGR03339       148 ---LDRVVLGNDPLVAVVHRQHPLAERES----------------------VTLEELA----GQPL--LMREPGSVTRQT  196 (279)
T ss_pred             ---EEEEEEECCCEEEEEECCCHHHCCCC----------------------CCHHHHC----CCCE--EEECCCCCHHHH
T ss_conf             ---39999404448999918863323999----------------------9999976----9998--982899839999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK  261 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~  261 (346)
                      +.+.....+-..                             ..+-..++...+... .....+|+.++-..+. +...+.
T Consensus       197 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~-v~~G~GiailP~~~v~-~~~~l~  245 (279)
T TIGR03339       197 TEEALAAAGVAP-----------------------------RPALEIGSREAIREA-VLAGLGVSVVSAAEVG-RDPRLR  245 (279)
T ss_pred             HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHH-HHHCCEEEEEEHHHHH-HCCCEE
T ss_conf             999999779987-----------------------------536778969999999-9979938971489961-098989


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             1344576789556027987503678999707885668899999999
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSF  307 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~  307 (346)
                      .+++....            ..|++|++..+ +....|++++|+++
T Consensus       246 ~~pl~~~~------------~~~~~~l~~~~-~r~~sp~~~aFie~  278 (279)
T TIGR03339       246 VLPIVGAE------------PTMDEYLYCLK-ERRGARLIAAFLEL  278 (279)
T ss_pred             EEECCCCC------------CCCEEEEEEEC-CCCCCHHHHHHHHH
T ss_conf             99898889------------86279999989-98689999999965


No 19 
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=98.06  E-value=0.00028  Score=42.56  Aligned_cols=202  Identities=11%  Similarity=0.034  Sum_probs=120.5

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ....+++|+-+.+... ++..+...|.+.||++++. +..+.+..-...+.+|.    +|+|.++.++...         
T Consensus        90 ~~~G~l~Ig~~~t~a~~~LP~~l~~F~~~~P~v~l~-l~~~~~~~i~~~l~~g~----~Dl~i~~~~~~~~---------  155 (316)
T PRK12679         90 DTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLE-LIQGTPQEIATLLQNGE----ADIGIASERLSND---------  155 (316)
T ss_pred             CCCCEEEEEEEECCHHCCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC---------
T ss_conf             877649999850320103819999999868995389-98478799999998799----8852224677899---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                       ..+...+...+..++++.++.|....                      +...|.|+.    +.|+  +.+..+|+++..
T Consensus       156 -p~l~~~p~~~~~~~lvvp~~HpLa~~----------------------~~vsl~~L~----~~pl--I~~~~g~~~R~~  206 (316)
T PRK12679        156 -PQLVAFPWFRWHHSLLVPLDHPLTQI----------------------TPLTLESIA----KWPL--ITYRQGITGRSR  206 (316)
T ss_pred             -CCCEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHHC----CCCE--EEECCCCHHHHH
T ss_conf             -76079980553413560189951248----------------------998999987----9998--950899849999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK  261 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~  261 (346)
                      +.+.....+...                             ..+-...+...+...+.. .-+|+.++--.+....    
T Consensus       207 id~~f~~~G~~p-----------------------------~i~~e~~~~~~i~~~V~~-GlGvailp~~a~~~~~----  252 (316)
T PRK12679        207 IDDAFARKGLLA-----------------------------DIVLSAQDSDVIKTYVAL-GLGIGLVAEQSSGEQE----  252 (316)
T ss_pred             HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCCEEECHHHHCCCCC----
T ss_conf             999999779999-----------------------------779999989999999998-9909970144507546----


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             134457678955602798750367899970788566889999999974
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                             ......+-.......|.+|+.+++ ..-..+.+++|+.++-
T Consensus       253 -------~~~l~~~~~~~~~~~~~~~~~~~r-~~~l~~~~~~Fi~~~~  292 (316)
T PRK12679        253 -------EKNLIRLDTRHLFDANTVWLGLKR-GQLQRNYVWRFLELCN  292 (316)
T ss_pred             -------CCCEEEECCCCCCCCCEEEEEEEC-CCCCHHHHHHHHHHHH
T ss_conf             -------898899326346766538999967-8755699999999752


No 20 
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=98.03  E-value=0.00075  Score=40.21  Aligned_cols=281  Identities=14%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC-CCCEEEEEE-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-HHHHHHHCCC
Q ss_conf             92489999999999998314201-376799980-34258999999999998779807999815762057-8988521013
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTF-ARNRIRIAG-SSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVG-LKEFCRGIGD   77 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~-a~~~I~i~G-Sst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~G-i~~~~~G~~~   77 (346)
                      ||++.+.++++.++++..+.+.. ...++++-- +.-+   -..+.++|++++ |++| ++.--+|..- +..+.+|. .
T Consensus         1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i~~W~~Yi---~~~~i~~Fe~et-GikV-~~~~~~s~ee~~akL~a~~-~   74 (348)
T PRK09501          1 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYV---PPGLLEQFTKET-GIKV-IYSTYESNETMYAKLKTYK-D   74 (348)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCC---CHHHHHHHHHHH-CCEE-EEEECCCHHHHHHHHHCCC-C
T ss_conf             93689999999999973503354338979998710018---978999999998-9889-9995499999999997179-9


Q ss_pred             CCCCEEECCCCCC-------------HHHHHHHH-------HCCC--CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf             3530121332024-------------76787676-------2487--872466652154125541666545688888887
Q gi|254780707|r   78 DTIDIVNSSRKIT-------------QNELDECK-------KHGV--SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYK  135 (346)
Q Consensus        78 ~~~dig~ssr~l~-------------~~E~~~~~-------~~~~--~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~  135 (346)
                      +..|+...|..+-             ...+....       ....  ..--.+|...+...+++|.+-..          
T Consensus        75 ~~yDvv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~----------  144 (348)
T PRK09501         75 GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVD----------  144 (348)
T ss_pred             CCCEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCC----------
T ss_conf             9828999796899999977984547842284812269767447748998489889975115998501147----------


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCC-CCCCCHHHHHHCCCCCCHHCCCC
Q ss_conf             64102555553236730232310011122450354488542357899988513455-56541011111013660001344
Q gi|254780707|r  136 ALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGC-VRSRNFSKMRDMFKYNVQQLSVA  214 (346)
Q Consensus       136 ~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
                                   ..+++.|.++-.  |..+=++....+.   ++.|.-.+..-+. .......... ..........  
T Consensus       145 -------------~~~~~SW~dL~d--p~~kGki~~~d~~---~~~~~~al~~lG~~~n~~d~~~l~-~a~~~L~~~~--  203 (348)
T PRK09501        145 -------------PKSVTSWADLWK--PEYKGSLLLTDDA---REVFQMALRKLGYSGNTTDPKEIE-AAYNELKKLM--  203 (348)
T ss_pred             -------------CCCCCCHHHHCC--HHHCCEEEECCCH---HHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHH--
T ss_conf             -------------888887898549--6647907971667---899999999827998889999999-9999999851--


Q ss_pred             CCCCCCCCCCEECCCCHHHHHHHHCCCCC--CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEC
Q ss_conf             43102466402116623677763101532--1001332001100111001344576789556027987503678999707
Q gi|254780707|r  215 CTSVRQDGIAIEVDGDYTETLARIEVNKD--VFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKR  292 (346)
Q Consensus       215 ~~~~~~~~~~i~~~~~~~~~~~~v~~~~~--~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~  292 (346)
                             .....+..+  ...+.+....-  +.+|.+-.+...    -...+++.+.|.     .|+.-+ ...+.+.+.
T Consensus       204 -------~~i~~~~sd--~~~~~l~~Gev~ia~~wsgda~~~~----~~~~~i~~v~Pk-----EG~~~w-~D~~~Ipk~  264 (348)
T PRK09501        204 -------PNVAAFNSD--NPANPYMEGEVNLGMIWNGSAFVAR----QAGTPIDVVWPK-----EGGIFW-MDSLAIPAN  264 (348)
T ss_pred             -------CCEEEEECC--CHHHHHHCCCCEEEEEECHHHHHHH----HCCCCCCEEECC-----CCCEEE-EEEEEEECC
T ss_conf             -------105898177--0546987388329987405899999----708997189757-----886699-899889899


Q ss_pred             CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             8856688999999997498740522027755963489999999999996
Q gi|254780707|r  293 QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA  341 (346)
Q Consensus       293 ~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~  341 (346)
                        ........+|++|+|+.+-+.+  +....||.+--...++..-..++
T Consensus       265 --A~n~e~A~~FInf~l~Pevaa~--~a~~~~y~t~n~~A~~~l~~e~~  309 (348)
T PRK09501        265 --AKNKEGALKLINFLLRPDVAKQ--VAETIGYPTPNLAARKLLSPEVA  309 (348)
T ss_pred             --CCCHHHHHHHHHHHHCHHHHHH--HHHHHCCCCHHHHHHHHCCHHHH
T ss_conf             --9898999999998619799999--99974889830888861899886


No 21 
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=98.03  E-value=0.00055  Score=40.94  Aligned_cols=200  Identities=14%  Similarity=0.209  Sum_probs=114.0

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ..+++|+|+-+.++.. ++..+..+|.++||++++. +....+..=++.+.+|.    +|||....+..+.         
T Consensus         3 ~~~G~i~I~~~~~~~~~~lp~~l~~f~~~~P~i~i~-i~~~~~~~i~~~l~~g~----~Di~i~~~~~~~~---------   68 (209)
T pfam03466         3 GPRGRLRIGAPPTFAAYLLPPLLARFRERYPDVELE-LREGDSEELLDLLAEGE----LDLAIRRGPPDDP---------   68 (209)
T ss_pred             CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CEEEEECCCCCCC---------
T ss_conf             987899999388999999999999999988892899-99898488999998698----1488731789999---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                        .+...++..+.++++.+++.+...                      ++..+++|+    .+.+...+.  .+...+..
T Consensus        69 --~~~~~~l~~~~~~~~~s~~~~l~~----------------------~~~i~~~~l----~~~~~i~~~--~~~~~~~~  118 (209)
T pfam03466        69 --GLEARPLFEEPLVLVAPPDHPLAA----------------------GEPVSLEDL----ADEPLILLE--PGSGLRDL  118 (209)
T ss_pred             --CEEEEEEEEEEEEEEECCCCHHHC----------------------CCCCCHHHH----CCCCEEEEC--CCCCCHHH
T ss_conf             --808999762413655336705542----------------------897543551----466579856--99871379


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CC
Q ss_conf             9988513455565410111110136600013444310246640211662367776310153210013320011001--11
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DV  259 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~  259 (346)
                      |.+.........                             ...-..++.. ....+.....+++.++-..+....  ..
T Consensus       119 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~lv~~g~Gi~~lp~~~~~~~~~~~~  168 (209)
T pfam03466       119 VDRALERAGLRP-----------------------------RVALEVNSLE-ALLAAVAAGLGIALLPRSAVARELADGR  168 (209)
T ss_pred             HHHHHHHCCCCC-----------------------------CEEEEECCHH-HHHHHHHHCCEEEECCHHHHHHHHHCCC
T ss_conf             987787648763-----------------------------0246747879-9999999499999913999998875899


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             00134457678955602798750367899970788566889999999974
Q gi|254780707|r  260 LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       260 ~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                      +..++.            ...++.+.+|++.++. ....+.++.|++|+.
T Consensus       169 L~~i~~------------~~~~~~~~~~li~~~~-~~~s~~~~~f~~~l~  205 (209)
T pfam03466       169 LVVLPL------------PDPPLPRPIYLVYRKG-RRLSPAVRAFIDFLR  205 (209)
T ss_pred             EEEEEC------------CCCCCCCEEEEEEECC-CCCCHHHHHHHHHHH
T ss_conf             899958------------8888744799999894-978999999999999


No 22 
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=97.98  E-value=0.00047  Score=41.32  Aligned_cols=203  Identities=13%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ....+|+|+-+.+... ++..+...|.+.||++++. +....|..-++.+.+|.    +|||....++...         
T Consensus        90 ~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~L~~g~----~Dl~i~~~~~~~~---------  155 (308)
T PRK12683         90 RDSGRLTVATTHTQARYALPKVVRQFTEVFPKVHLA-LRQGSPQEIAEMLLNGE----ADIGIATEALDRE---------  155 (308)
T ss_pred             CCCCEEEECCCCHHHHHCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC---------
T ss_conf             777624200132011201684668999878996699-96078699999997799----7788066677888---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                       ..+...++..+..++++.++.|.....                      ...|.|+    .+.|  ++.++++++++..
T Consensus       156 -~~l~~~~l~~~~~~lv~~~~hpla~~~----------------------~v~l~dl----~~~p--~I~~~~~~~~r~~  206 (308)
T PRK12683        156 -PDLVSFPYYSWHHVVVVPKGHPLTGRE----------------------NLTLEAL----AEYP--IITYDQGFTGRSH  206 (308)
T ss_pred             -CCCEEEEECCCCEEEEECCCCCCCCCC----------------------CCCHHHH----CCCC--EEECCCCCCHHHH
T ss_conf             -771687612451589846999533699----------------------9999998----5999--8961899829999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011-10
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD-VL  260 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~-~~  260 (346)
                      +.+.....+-..                             ..+-..++...+...+. ...+++.++...+..... .+
T Consensus       207 i~~~~~~~g~~p-----------------------------~~~~e~~~~~~i~~~V~-~g~Gi~ilp~~~~~~~~~~~l  256 (308)
T PRK12683        207 IDQAFAEAGAVP-----------------------------DIVLTALDADVIKTYVE-LGMGVGIVAAMAYDPQRDTGL  256 (308)
T ss_pred             HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCE
T ss_conf             999999779998-----------------------------57999998999999999-798470789999878860997


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             013445767895560279875036789997078856688999999997498
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
                      ..++            -......|.+++..++ +....+.+++|++++...
T Consensus       257 v~l~------------~~~~~~~~~~~i~~rk-~~~Ls~~a~~Fie~l~~~  294 (308)
T PRK12683        257 VALD------------TQHLFEANTTRVALRR-GAYLRGYAYRFIEMFAPH  294 (308)
T ss_pred             EEEE------------CCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHHH
T ss_conf             9998------------9788766179999909-685799999999998886


No 23 
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=97.95  E-value=0.00056  Score=40.90  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=43.8

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCHHHH---HHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHHCCCCCCCEEE
Q ss_conf             9999998314201376799980342589---999999999987798079998157620-5789885210133530121
Q gi|254780707|r   11 FVVLEVYCGTGTFARNRIRIAGSSTLFP---YSKIIAENFSEYFPEFKTPFVESGGSS-VGLKEFCRGIGDDTIDIVN   84 (346)
Q Consensus        11 ~~~l~~~~~~~~~a~~~I~i~GSst~~P---~~~~~a~~y~~~~~~~~~~~~~~~GSg-~Gi~~~~~G~~~~~~dig~   84 (346)
                      .+.|.++|+.++.+.+++++--..+...   .-..+.++|.+++ |+++..+ ..|+| .=++.+..-..+-..|+..
T Consensus         4 ~~~~~~~~a~~~~~~~~l~vyt~dsf~~d~g~~~~l~~~Fek~t-GikV~~v-~~~dg~~ll~Rl~~Eg~np~ADVv~   79 (326)
T PRK11205          4 CLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAFEAEC-GCELKFV-ALEDGVSLLNRLRLEGKNSKADVVL   79 (326)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCEEEEE-ECCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf             66779986362002987999966544446686479999998987-9689999-6796799999999738999765899


No 24 
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=97.90  E-value=0.00082  Score=39.97  Aligned_cols=202  Identities=11%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ..+..|+|+-+.+... ++..+...|.+.||++++. +....|..-+..+.+|.    +|+|.+..++.+.         
T Consensus        90 ~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~---------  155 (313)
T PRK12684         90 QDQGNLTIATTHTQARYALPAAIAEFKKRYPKVRLS-ILQGSPTQIAEMVIHDQ----ADLAIATEAIADY---------  155 (313)
T ss_pred             CCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC---------
T ss_conf             777514110245557515949999998448980899-97178899999997799----6655043577777---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                       ..+...++..+..+++++++.|....                      +...|.|+    .+.|.  +.++++++++..
T Consensus       156 -~~l~~~~l~~~~~~~v~~~~hpla~~----------------------~~v~l~dL----~~~p~--I~~~~~~~~r~~  206 (313)
T PRK12684        156 -KELVSLPCYQWNHAVVVPPDHPLLER----------------------KPLTLEDL----AQYPL--ITYDDAFAGRSK  206 (313)
T ss_pred             -CCEEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHH----CCCCE--EECCCCCCHHHH
T ss_conf             -87389980322168995389854469----------------------99999998----59998--962899858999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCC
Q ss_conf             998851345556541011111013660001344431024664021166236777631015321001332001100-1110
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVL  260 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~  260 (346)
                      +.+.....+-.                             +..+-..++...+.+.+. ...+|+.++--.+... ...+
T Consensus       207 i~~~~~~~g~~-----------------------------p~~~~e~~~~~~i~~~V~-~GlGi~ilP~~a~~~~~~~~L  256 (313)
T PRK12684        207 INKAFALRGLK-----------------------------PDIVLEAIDADVIKTYVE-LGLGVGIVADMAFDPERDRNL  256 (313)
T ss_pred             HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCCHHHHHHHHHCHHHCCCE
T ss_conf             99999977998-----------------------------747999997999999999-598572559998467638987


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             01344576789556027987503678999707885668899999999749
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      ..++            .......|++|+..++ +....+++++|++|+-.
T Consensus       257 ~~lp------------~~~~~~~~~~~v~~~k-~~~ls~~~r~FIe~l~e  293 (313)
T PRK12684        257 RAIP------------AGHLFGSNVTRVALKQ-GAYLRGYVYTFIELFSP  293 (313)
T ss_pred             EEEE------------CCCCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf             9997------------8467766059999979-88668999999999874


No 25 
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.83  E-value=0.00012  Score=44.67  Aligned_cols=277  Identities=12%  Similarity=0.128  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEE---EECCHHHH-HHHHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHHC
Q ss_conf             924899999999999983142013767999---80342589-99999999998779807999815-76205789885210
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRI---AGSSTLFP-YSKIIAENFSEYFPEFKTPFVES-GGSSVGLKEFCRGI   75 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i---~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~-~GSg~Gi~~~~~G~   75 (346)
                      ||+.++....+++|++....+..+.+.|--   .-|--++. +-....+..++.||+.++.+-|+ -||+.--++++.|.
T Consensus         6 mkk~~~~~~~~~~L~a~~~qa~as~~~lLNsSYDv~RElf~a~N~~F~~~w~~~~pG~~lti~QSHAGsSkQAraIlqGL   85 (341)
T COG4150           6 MKKNLLIGATILALFAALLQAGASATELLNSSYDVSRELFAALNPAFEAQWAKDNPGDKLTIKQSHAGSSKQARAILQGL   85 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             88988766999999999876146706676305678999999839899988886089964687234566558899998542


Q ss_pred             CCCCCCEEECC-C------C-CCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             13353012133-2------0-24767876762487872466652154125541666545688888887641025555532
Q gi|254780707|r   76 GDDTIDIVNSS-R------K-ITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKV  147 (346)
Q Consensus        76 ~~~~~dig~ss-r------~-l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i  147 (346)
                      ..+.+.|--.. .      - +-+.+++....+.-+++      +.--.+.+.+.|                        
T Consensus        86 ~ADVVTfNQVtDVqiLhdkg~lipAdWq~~lPnnsSPf------YS~~aFLVR~GN------------------------  135 (341)
T COG4150          86 KADVVTFNQVTDVQILHDKGKLIPADWQSRLPNNSSPF------YSTMAFLVRKGN------------------------  135 (341)
T ss_pred             CCCEEEEECCEEEEEEHHCCCCCCHHHHHHCCCCCCCC------CCCHHHHHHCCC------------------------
T ss_conf             45667740210243211048704624564099888964------323277753689------------------------


Q ss_pred             CCCCHHHHHHCCCCCCCCCCEEECCCC-CCCH--HHHHHHHHCC----CCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCC
Q ss_conf             367302323100111224503544885-4235--7899988513----45556541011111013660001344431024
Q gi|254780707|r  148 VFNPLKKWSEIRPDFPEVRIAIYVPSG-KHGT--REVLEKKVLQ----EGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQ  220 (346)
Q Consensus       148 ~~g~i~~W~~~~~~lp~~~I~~~~r~~-~SGT--~~~F~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (346)
                       ...|++|+|+-    ..+++++.|++ .||-  +.+....-..    +++.. ...........        ....  .
T Consensus       136 -PK~IkdW~DLv----RdDVk~iFPNPKTSGNaRYTYLAA~~~a~~af~gD~~-k~~ef~~k~~~--------Nv~V--F  199 (341)
T COG4150         136 -PKNIKDWDDLV----RDDVKLIFPNPKTSGNARYTYLAAWGAADEAFGGDKA-KTEEFMTKFLK--------NVEV--F  199 (341)
T ss_pred             -CCCCCCHHHHH----HHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHC--------CCCE--E
T ss_conf             -66676577775----5034476689988876001588987888765268588-99999999961--------8834--2


Q ss_pred             CCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CC-CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCC
Q ss_conf             6640211662367776310153210013320011001--11-00134457678955602798750367899970788566
Q gi|254780707|r  221 DGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DV-LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNS  297 (346)
Q Consensus       221 ~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~-~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~  297 (346)
                      |.+      ...+   ...=....||-+-+.|..+-.  .+ ..+-..+.|.|...-.+  .+|..   ++=...+..+.
T Consensus       200 DTG------GRgA---TTtFveRglGDVLItFEsE~~~irkqyg~d~~evVvP~~siLA--EFPVa---~Vdkvv~k~Gt  265 (341)
T COG4150         200 DTG------GRGA---TTTFVERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTSILA--EFPVA---WVDKVVDKNGT  265 (341)
T ss_pred             CCC------CCCC---CCHHHHHCCCCEEEEEEHHHCCHHHHHCCCCCEEECCCHHHHH--HCCHH---HHHHHHHHCCC
T ss_conf             168------8642---0004552566479994065302788738665237556533554--16526---77556530262


Q ss_pred             CHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             8899999999749874052202775596348999999999999
Q gi|254780707|r  298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSI  340 (346)
Q Consensus       298 ~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~  340 (346)
                      .+..++||+|.+|+++|.   ++.+.+|---.+++..+..+++
T Consensus       266 ~~~AkaYl~~LYsp~~Q~---i~a~~~~RV~d~~v~~~~k~~f  305 (341)
T COG4150         266 EKAAKAYLNYLYSPQAQT---IIAEFYYRVHDPEVMAKFKDKF  305 (341)
T ss_pred             HHHHHHHHHHHCCCHHHH---HHHHHCCCCCCHHHHHHHHHHC
T ss_conf             999999998860938879---9998353037899999987428


No 26 
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=97.74  E-value=0.0025  Score=37.27  Aligned_cols=199  Identities=12%  Similarity=0.102  Sum_probs=106.9

Q ss_pred             CCCCEEEEEEC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             13767999803-42589999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGS-STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GS-st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ....+|+|+-. +.....+.....+|++.||++++. +....+..-+..+.+|.    +|+|..+.+..+.         
T Consensus        78 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~~~----~D~a~~~~~~~~~---------  143 (278)
T PRK09986         78 GEAGRIELGVVGTALWGRMRPAMRHFLKENPNVEVL-FREKSPSMQMALLERRE----LDAGIWRMALEPN---------  143 (278)
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCC---------
T ss_conf             777733687421688876428999999878983999-99788699999997799----7589963777788---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                       ..+...++..+.+++++..+.+.....                      ...+.++    .+.++..+  .+.++.+..
T Consensus       144 -~~~~~~~l~~~~~~~~~~~~hpla~~~----------------------~i~~~~l----~~~~~i~~--~~~~~~~~~  194 (278)
T PRK09986        144 -PGFTSLRLHESAFAVAVPEEHLLASKS----------------------SVPLKAL----RNEYFVTL--PSVHSDWGF  194 (278)
T ss_pred             -CCCEEEEEEECCCEEEECCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH
T ss_conf             -774268877416379965987333699----------------------9999998----59997986--799866999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK  261 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~  261 (346)
                      +.+.....+..                             ...+...++...+.+.+... .+++.++-.+.......+.
T Consensus       195 ~~~~~~~~g~~-----------------------------~~~~~~~~~~~~~~~~V~~G-~Giailp~~~~~~~~~~v~  244 (278)
T PRK09986        195 LQRVCQQAGFS-----------------------------PQIIREVNEPQTVLAMVSMG-IGITLVADSYAQMPWPGVV  244 (278)
T ss_pred             HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHHHC-CEEEEEHHHHHCCCCCCEE
T ss_conf             99999977998-----------------------------51799999899999999979-9899841777423789999


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             134457678955602798750367899970788566889999999974
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                      ..+++           .  ++.+.+|++.++++  ..|++++|+++..
T Consensus       245 ~~Pl~-----------~--~~~~~~~lv~~~~~--~~p~~~~fi~~l~  277 (278)
T PRK09986        245 FRPLK-----------E--RIPADLYIVYHQQQ--ATPALEKLLAALT  277 (278)
T ss_pred             EEECC-----------C--CCCEEEEEEECCCC--CCHHHHHHHHHHC
T ss_conf             99889-----------9--98038999984999--9999999999865


No 27 
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=97.58  E-value=0.0026  Score=37.22  Aligned_cols=201  Identities=11%  Similarity=0.074  Sum_probs=111.2

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ...+|+|+-+.+... ++..+..+|.+.||++++. +....+..-.+.+.+|.    +|+|....++.+.          
T Consensus        91 ~~G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~----------  155 (309)
T PRK12682         91 DSGTLTIATTHTQARYVLPRVVAKFRKRYPKVNLS-LHQGSPDEIAQMVISGE----ADIGIATESLDDD----------  155 (309)
T ss_pred             CCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCHHHHHCCCCCC----------
T ss_conf             77741212431333203862539999878983799-98378299999997699----7645650777789----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                      ..+...++..+..++++.++.+....                      +..+|.|+    .+.|...+  ++++.++..+
T Consensus       156 ~~l~~~~l~~~~~~~v~~~~h~la~~----------------------~~i~~~dL----~~~p~I~~--~~~~~~r~~~  207 (309)
T PRK12682        156 PDLVTLPCYDWTHAVIVPSDHPLAQK----------------------ERITLEDL----AEYPLITY--HPGFTGRSAI  207 (309)
T ss_pred             CCEEEEEEECCCEEEEECCCCHHHCC----------------------CCCCHHHH----CCCCEEEE--CCCCCHHHHH
T ss_conf             88089993315236761699721149----------------------99999998----28997972--7998679999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100-11100
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVLK  261 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~~  261 (346)
                      .+.....+-.                             ...+-...+...+.+.+. ...+|++++--..... ...+.
T Consensus       208 ~~~~~~~g~~-----------------------------p~~~~~~~~~~~~~~~v~-~G~Gi~~lp~~~~~~~~~~~Lv  257 (309)
T PRK12682        208 DKAFAAAGLQ-----------------------------PDIVLEAIDSDVIKTYVR-LGLGVGIIAEMAYRPDRDGDLV  257 (309)
T ss_pred             HHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCEEEHHHHHHHHHHHCCCEE
T ss_conf             9999977999-----------------------------626999998999999999-5994242289983376479989


Q ss_pred             CCCCCCCCCCHHHHCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             13445767895560279875-036789997078856688999999997498
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYP-ISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YP-l~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
                      .++.             .++ ..++.|++.. ++....+.+++|++|+-..
T Consensus       258 ~v~~-------------~~~~~~~~~~l~~r-k~~~l~~~~~~FId~l~e~  294 (309)
T PRK12682        258 ALPA-------------GHLFGPNTAWVAVK-RGAYLRNYVYDFIELLAPH  294 (309)
T ss_pred             EEEC-------------CCCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHH
T ss_conf             9979-------------88777617999996-9661189999999999987


No 28 
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.57  E-value=0.0023  Score=37.45  Aligned_cols=234  Identities=15%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC-CCCCEEECCCCCCHHHHHH--------------HHHCCCCCCEE
Q ss_conf             99999987798079998157620578988521013-3530121332024767876--------------76248787246
Q gi|254780707|r   43 IAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGD-DTIDIVNSSRKITQNELDE--------------CKKHGVSDIQE  107 (346)
Q Consensus        43 ~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~-~~~dig~ssr~l~~~E~~~--------------~~~~~~~~~~~  107 (346)
                      +.+.|++. +++++. +.-.||+..+...+.-..+ ...|+..++.+..-..+..              ...........
T Consensus         1 ~~~~f~~~-~gikv~-~~~~~s~~~~~~~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~~~~~i~~~~~~~~~~   78 (299)
T COG1840           1 LIKAFEKK-PGIKVE-FVDAGSGELLARIIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSPELDEIPAWAPDPDGA   78 (299)
T ss_pred             CHHHHHHC-CCCEEE-EEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             95567337-796689-8748848999999972248998818960681699999857972226983465653313464446


Q ss_pred             EEE-ECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCE-EECCCCCCCHHHHHHHH
Q ss_conf             665-2154125541666545688888887641025555532367302323100111224503-54488542357899988
Q gi|254780707|r  108 VTI-GHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIA-IYVPSGKHGTREVLEKK  185 (346)
Q Consensus       108 ~~v-~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~-~~~r~~~SGT~~~F~~~  185 (346)
                      ... -....++++|.........                    ...+.|.|+-.  |.-.=. ...|+..||+  .+...
T Consensus        79 ~~~~~~~~~~~~~n~~~~~~~~~--------------------~~P~~w~DL~~--p~~kg~i~~~~p~~s~~--~~~~~  134 (299)
T COG1840          79 YGGGYVGPLVFAVNTDYNKDLLK--------------------PVPKSWADLAK--PEYKGKVQMADPTSSGT--AYAAL  134 (299)
T ss_pred             CCCCEEEEEEEEEEEECCCCCCC--------------------CCCCCHHHHHC--HHHCCCEEEECCCCCHH--HHHHH
T ss_conf             65644778999996110344568--------------------99867998709--88669846547885589--99999


Q ss_pred             HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf             51345556541011111013660001344431024664021166236777631015321001332001100111001344
Q gi|254780707|r  186 VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPI  265 (346)
Q Consensus       186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~  265 (346)
                      ...   ...+......+........  .          . .....+..+...+......+|+.-..+...........++
T Consensus       135 ~~~---~~~G~~~~~~~l~~l~~n~--~----------~-~~~~~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v  198 (299)
T COG1840         135 LAL---QAYGEEKGWAYLKGLAANL--A----------T-YTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPV  198 (299)
T ss_pred             HHH---HHCCHHHHHHHHHHHHHHC--C----------C-CCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCE
T ss_conf             999---8648799999999999851--3----------3-4578828899997479864788721079999751469856


Q ss_pred             CCCCCCHHHHCCCCCCCEEEEEE-EEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCC-CCCH
Q ss_conf             57678955602798750367899-97078856688999999997498740522027755963-4899
Q gi|254780707|r  266 DGIVPSMGTIVSGLYPISRPLLF-YVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLI-PISN  330 (346)
Q Consensus       266 ~~v~p~~~~i~~g~YPl~r~ly~-yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~Gyv-PLp~  330 (346)
                      .-+.|..     | +.+. +..+ .+++.+  ..++.|.|++|++|+++|.   ++...++. ++|.
T Consensus       199 ~iv~P~~-----G-~~v~-~~~vaiik~a~--~~e~Ak~fid~llS~egQ~---~~~~~~~~~~~~~  253 (299)
T COG1840         199 EVVYPEE-----G-TGVN-PSGVALLKKAK--NPEAAKLFIDFLLSKEGQE---ILAKKGYSPEIPV  253 (299)
T ss_pred             EEEECCC-----C-CEEE-EEEEEEECCCC--CHHHHHHHHHHHCCHHHHH---HHHHCCCCCCCCC
T ss_conf             9994898-----8-6897-54355434899--9899999999980898899---9984175766788


No 29 
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=97.55  E-value=0.0049  Score=35.67  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             EEEEEECCCCCCCHHHHH-HHHHHHCHHHCC-CCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             899970788566889999-999974987405-2202775596348999999999999607
Q gi|254780707|r  286 LLFYVKRQHFNSVLGLRE-YVSFSVSDEMMA-PDSQLFQYGLIPISNEERKSVRDSIAVG  343 (346)
Q Consensus       286 ly~yv~~~~~~~~~~~~~-Fl~~~ls~~~~~-~~~~~~~~GyvPLp~~~~~~~~~~~~~~  343 (346)
                      .+.+-+.-+.+....+++ |+++--++.+.. .-......||+|..++.++-+|+..++-
T Consensus       227 ~~~v~~~l~~~~~~~i~~all~l~~~d~~~~~~l~~~~~~gf~~a~d~DYd~vR~~~ka~  286 (288)
T TIGR03431       227 PIVYRKDLPADLKAKIRKAFLNYHKTDKACFEKIAGGDLKGFVAASDKDYDPIRDLKKAK  286 (288)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf             189969999999999999998078678768998742554782888878779999999861


No 30 
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=97.53  E-value=0.0052  Score=35.51  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             7679998034258-999999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r   25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS  103 (346)
Q Consensus        25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~  103 (346)
                      ..+++|+.+.++. .+...|-..|.+.||++++. +....+..-++.+.+|.    +|+|.+.-+++..++         
T Consensus        88 ~~~l~ig~~~~~~~~~l~~~l~~~~~~~P~v~l~-l~~~~~~~~~~~L~~~~----~Dl~i~~~~p~~~~l---------  153 (275)
T PRK03601         88 HNEFSIGASASLWECMLNQWLGRLYQNQEELQFE-ARIAQRQSLVKQLHERQ----LDLLITTEAPKMDEF---------  153 (275)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCCE---------
T ss_conf             7609999775778999999999999978896799-99889899999997799----358997779988884---------


Q ss_pred             CCEEEEEECCCCEEEECCCC
Q ss_conf             72466652154125541666
Q gi|254780707|r  104 DIQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus       104 ~~~~~~v~~d~i~i~~n~~~  123 (346)
                        ...+++...++++...+.
T Consensus       154 --~~~~l~~~~l~l~~s~~~  171 (275)
T PRK03601        154 --SSQLLGHFTLALYTSAPS  171 (275)
T ss_pred             --EEEEECCEEEEEEECCCC
T ss_conf             --799952356899977864


No 31 
>pfam01547 SBP_bac_1 Bacterial extracellular solute-binding protein. This family also includes the bacterial extracellular solute-binding protein family POTD/POTF.
Probab=97.49  E-value=0.0031  Score=36.75  Aligned_cols=55  Identities=24%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH----HHCCCCCCCEEECCCCC
Q ss_conf             03425899999999999877980799981576205789885----21013353012133202
Q gi|254780707|r   32 GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC----RGIGDDTIDIVNSSRKI   89 (346)
Q Consensus        32 GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~----~G~~~~~~dig~ssr~l   89 (346)
                      ++.+-...++.+.++|+++||+++| .++..+++.....+.    +|.  ...||...+...
T Consensus         2 ~~~~~~~~~~~li~~Fe~~~p~IkV-~~~~~~~~~~~~kl~~~~~ag~--~~~Dv~~~~~~~   60 (260)
T pfam01547         2 ASLTEGAALQALVAEFEKEHPGIKV-EVESVGSGSLAQKLTTAIAAGD--GPADVFASADDW   60 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHHHHHHHHCCC--CCCEEEEECCHH
T ss_conf             9866899999999999988849089-9997882799999999997699--986699978365


No 32 
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=97.47  E-value=0.0063  Score=35.05  Aligned_cols=135  Identities=16%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             HHHHHCCCCCCCCEEEEEECCHHH--HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCH
Q ss_conf             999831420137679998034258--999999999998779807999815762057898852101335301213320247
Q gi|254780707|r   14 LEVYCGTGTFARNRIRIAGSSTLF--PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQ   91 (346)
Q Consensus        14 l~~~~~~~~~a~~~I~i~GSst~~--P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~   91 (346)
                      +.+...+++. +..++++-.+++.  -+...+-..|.+ .++..+ .+-++|+|..++..-.|.    +|....-.|-.+
T Consensus        19 la~~~a~sa~-~~~LrmATTTSt~dtGLLd~l~p~fE~-~~g~~v-~~vAvGTG~ALkmge~gd----vDvv~vHapk~E   91 (280)
T COG2998          19 LASYSASSAD-AAELRMATTTSTEDTGLLDVLLPKFEK-YTGYDV-QVVAVGTGKALKMGERGD----VDVVIVHAPKAE   91 (280)
T ss_pred             HHHHHCCCCC-CCEEEEEEECCCCCCCCHHHHHHHHHH-CCCCEE-EEEEECCHHHHHHHCCCC----CCEEEEECCHHH
T ss_conf             9998605754-203788543024556318887776643-369658-999812358775112688----678998370778


Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEC
Q ss_conf             67876762487872466652154125541666545688888887641025555532367302323100111224503544
Q gi|254780707|r   92 NELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYV  171 (346)
Q Consensus        92 ~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~  171 (346)
                      .|.  .....  .+...++.+.-..++-..+.|..-.....+.+.|-            .|          .+...+.+.
T Consensus        92 ~~f--v~~G~--gv~r~~vmYNdFiiVgp~~dpA~~k~~kn~~e~fe------------~I----------a~~ka~FvS  145 (280)
T COG2998          92 KEF--VKDGF--GVDRRPVMYNDFIIVGPADDPAGIKDAKNGKEAFE------------KI----------AEEKAKFVS  145 (280)
T ss_pred             HHH--HHCCC--CCCCCCEEEEEEEEECCCCCCHHCCCCHHHHHHHH------------HH----------HHCCCEEEE
T ss_conf             999--87278--86676101311799877666111122000899999------------99----------972890574


Q ss_pred             CCCCCCHHHH
Q ss_conf             8854235789
Q gi|254780707|r  172 PSGKHGTREV  181 (346)
Q Consensus       172 r~~~SGT~~~  181 (346)
                      |.|.|||..-
T Consensus       146 RGD~SGT~~~  155 (280)
T COG2998         146 RGDNSGTDSK  155 (280)
T ss_pred             CCCCCCCCHH
T ss_conf             2787784277


No 33 
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=97.45  E-value=0.0066  Score=34.95  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             HHHHHHHHCCCCCCCCEEEE--EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH----HCCCCCCCEEE
Q ss_conf             99999983142013767999--8034258999999999998779807999815762057898852----10133530121
Q gi|254780707|r   11 FVVLEVYCGTGTFARNRIRI--AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCR----GIGDDTIDIVN   84 (346)
Q Consensus        11 ~~~l~~~~~~~~~a~~~I~i--~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~----G~~~~~~dig~   84 (346)
                      -+++++..++.+.+..+|+.  .-+....-.++.++++|++.||+++|..+..+.-..-+..++.    |.   ..||..
T Consensus        12 ~~~~~~~~~~~a~a~~eI~fWh~~~g~~~~~l~~lv~eFn~~~p~i~V~~~~~g~y~~~l~k~~aa~~ag~---~Pdv~~   88 (439)
T PRK10974         12 GLALGLALSGNAQAVTEIPFWHSMEGELGKEVDSLAQRFNASQPDYKIVPVYKGNYEQNLAAGIAAFRSGN---APAILQ   88 (439)
T ss_pred             HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC---CCEEEE
T ss_conf             99999984455679769999358998157999999999998785918999865899999999999872699---982999


Q ss_pred             CCC-------------CCCH-----------HHH-HHHH----HCCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf             332-------------0247-----------678-7676----24878724666521541255416665
Q gi|254780707|r   85 SSR-------------KITQ-----------NEL-DECK----KHGVSDIQEVTIGHDGILLVSDRDMV  124 (346)
Q Consensus        85 ssr-------------~l~~-----------~E~-~~~~----~~~~~~~~~~~v~~d~i~i~~n~~~~  124 (346)
                      ...             |+.+           .+. ....    ......+-.+|+..+..+++||++..
T Consensus        89 ~~~~~~~~~~~~~~l~pl~~~~~~~~~~~d~~~~~p~~~~~~~~~~~Gk~yglP~~~s~~vlyYNkdlf  157 (439)
T PRK10974         89 VYEVGTATMMASKAIKPVYDVFKDAGIPFDESQFVPTVAGYYSDAKTGHLLSQPFNSSTPVLYYNKDAF  157 (439)
T ss_pred             ECCCCHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEHHHH
T ss_conf             874309999976997771798972587878565327888761257798699983037765999858999


No 34 
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=97.31  E-value=0.0099  Score=33.96  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH-H--HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH-HHCC
Q ss_conf             9248999999999999831420137679998034258-9--9999999999877980799981576205789885-2101
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLF-P--YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC-RGIG   76 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~-P--~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~-~G~~   76 (346)
                      ||++++.++++.++.++|++++.+..++++.=..+.. .  .-.++.++|+++| +.++..+..++.+.=+..++ +|. 
T Consensus         1 m~~~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~-~~~v~fV~~~d~v~llnRl~leg~-   78 (336)
T COG4143           1 MRRLLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEY-GCKVNFVALGDGVELLNRLILEGK-   78 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHHCCC-
T ss_conf             902499999999999986577634853899997634225688578999999985-952899970758999999997078-


Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHCCCCC------------------CEEEEEECCCCEEEECCCC
Q ss_conf             3353012133202476787676248787------------------2466652154125541666
Q gi|254780707|r   77 DDTIDIVNSSRKITQNELDECKKHGVSD------------------IQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus        77 ~~~~dig~ssr~l~~~E~~~~~~~~~~~------------------~~~~~v~~d~i~i~~n~~~  123 (346)
                      +-..|+.   --+....++...+.+...                  ...+|..++-++++|+..-
T Consensus        79 ~~~ADvv---vGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~  140 (336)
T COG4143          79 NPKADVV---VGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTK  140 (336)
T ss_pred             CCCCCEE---EECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
T ss_conf             9888589---9347277888885587666789855788876535675101245412899976577


No 35 
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=97.30  E-value=0.01  Score=33.87  Aligned_cols=59  Identities=17%  Similarity=0.093  Sum_probs=34.8

Q ss_pred             EEEEEECCHH---HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC-CCCEEECC
Q ss_conf             7999803425---899999999999877980799981576205789885210133-53012133
Q gi|254780707|r   27 RIRIAGSSTL---FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD-TIDIVNSS   86 (346)
Q Consensus        27 ~I~i~GSst~---~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~-~~dig~ss   86 (346)
                      +|++-....-   .-.++.+.++|.++||++++. ++..+.+.-.+.+......+ ..|+...+
T Consensus        32 ~i~~~~~~~~~~~~~~~~~~i~~f~~~~p~ikV~-~~~~~~~~~~~~l~~~~~ag~~pDv~~~~   94 (433)
T COG1653          32 TITFWHSWTGGEEADALEELIKEFEKENPGIKVK-VVNVPGDDYLQKLLTALASGDAPDVVQLD   94 (433)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             3999983378731589999999999777984799-98567588999999998579998199977


No 36 
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=97.27  E-value=0.011  Score=33.72  Aligned_cols=200  Identities=12%  Similarity=0.055  Sum_probs=112.5

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ....|+|+-+.++.+ ++..+...|.+.||++++. +....|..-+..+.+|.    +|+|....+....          
T Consensus        89 ~~G~lrig~~~~~~~~llp~~l~~f~~~~P~v~i~-l~~~~~~~l~~~l~~g~----~D~~i~~~~~~~~----------  153 (305)
T PRK11151         89 MSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMY-LHEAQTHQLLAQLDSGK----LDCAILALVKESE----------  153 (305)
T ss_pred             CCCEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC----------
T ss_conf             76414311022233323827799986238983799-99887577787865788----5379984588998----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                       .+...++..+.+++++..+.|....                      +...|.|+.    +.+.  +.+++++++++..
T Consensus       154 -~~~~~~l~~e~l~lv~~~~hpla~~----------------------~~i~l~~L~----~~~~--i~~~~~~~~r~~~  204 (305)
T PRK11151        154 -AFIEVPLFDEPMLLAVYEDHPWANR----------------------DRVPMSDLA----GEKL--LMLEDGHCLRDQA  204 (305)
T ss_pred             -CCEEEEECCCCEEEEEECCCCCCCC----------------------CCCCHHHHC----CCCE--EEECCCCCHHHHH
T ss_conf             -7268762046279999589843369----------------------998999976----9988--9968998599999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC--CCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100--1110
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN--ADVL  260 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~--~~~~  260 (346)
                      .++....+.....                             .-...+...+.+.+. ...+++.++...+...  ...+
T Consensus       205 ~~~~~~~g~~~~~-----------------------------~~~~~~~~~i~~lV~-~G~Gv~ilp~~~v~~~~~~~~l  254 (305)
T PRK11151        205 MGFCFEAGADEDT-----------------------------HFRATSLETLRNMVA-AGSGITLLPALAVPNERKRDGV  254 (305)
T ss_pred             HHHHHHCCCCCCE-----------------------------EEEEECHHHHHHHHH-HCCCEEECCHHHHHHHCCCCCE
T ss_conf             9999977999873-----------------------------899944799999999-2996898359998622126988


Q ss_pred             CCCCCCCCCCCHHHHCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             013445767895560279875-036789997078856688999999997498
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYP-ISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YP-l~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
                      ..+++             ..| +.|+++++..+ +....+++++|++++-+.
T Consensus       255 ~~~pl-------------~~~~~~r~i~lv~r~-~~~ls~~~~~~~e~ir~~  292 (305)
T PRK11151        255 CYLPC-------------IKPEPRRTIGLVYRP-GSPLRSRYEQLAEAIRAR  292 (305)
T ss_pred             EEEEC-------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf             99988-------------899973699999989-098789999999999998


No 37 
>PRK03537 hypothetical protein; Provisional
Probab=97.21  E-value=0.0044  Score=35.93  Aligned_cols=41  Identities=27%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCC
Q ss_conf             79875036789997078856688999999997498740522027755963489
Q gi|254780707|r  277 SGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPIS  329 (346)
Q Consensus       277 ~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp  329 (346)
                      ...|||+-.     +    +..+..+.|++|++|+++|.   +|.+.||-|-|
T Consensus       146 ~~~Y~iav~-----~----~a~~~A~~f~~flls~~gQ~---iL~~~GF~pp~  186 (188)
T PRK03537        146 GANYGLAVL-----K----DASEAARPLAEFILSPKGQA---ILAQYGFSPPP  186 (188)
T ss_pred             CCCEEEEEC-----C----CCCHHHHHHHHHHCCHHHHH---HHHHCCCCCCC
T ss_conf             632357873-----6----88099999999973999999---99980899999


No 38 
>TIGR01256 modA molybdate ABC transporter, periplasmic molybdate-binding protein; InterPro: IPR005950   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represents a hydrophylioc periplasmic-binding protein in Gram-negative organisms and its counterpart in Gram-positive organisms is a lipoprotein. The other components of the system include ModB, an integral membrane protein and ModC, the ATP-binding subunit. Almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.; GO: 0015412 molybdate transmembrane-transporting ATPase activity, 0015689 molybdate ion transport, 0030288 outer membrane-bounded periplasmic space.
Probab=97.20  E-value=0.013  Score=33.29  Aligned_cols=216  Identities=20%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             58999999999998779807999815762057898852101335301213320247678767624878724666521541
Q gi|254780707|r   36 LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGI  115 (346)
Q Consensus        36 ~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i  115 (346)
                      +.--++.++++|++.||+.+| +++=++||.=.+|+.+|.   -+|+=.|-.....+++-+  +..+......+++.+-+
T Consensus         4 lT~Al~~i~~~F~k~~g~~~V-v~sFgsSg~L~~QI~~GA---P~D~F~SA~~~~~~~L~~--~g~~v~~~~~~~~~n~L   77 (225)
T TIGR01256         4 LTDALKEIAKQFEKRTGKNKV-VFSFGSSGTLYTQIENGA---PADVFISADEKRPKKLVD--KGLVVKGSEFVYAGNKL   77 (225)
T ss_pred             HHHHHHHHHHHHHCCCCCCEE-EEEECCCHHHHHHHHCCC---CEEEEECCCCCCCHHHHH--CCCEECCCCEEEEEEEE
T ss_conf             468999999886200899569-998768178999997179---788766146345404663--78730254458986218


Q ss_pred             EEEECCC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             2554166-654568888888764102555553236730232310011122450354488542357899988513455565
Q gi|254780707|r  116 LLVSDRD-MVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRS  194 (346)
Q Consensus       116 ~i~~n~~-~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~  194 (346)
                      |++...+ .....+...      .             -.+|-.+   +.+..|-+-  ++.+--+......++.+...+.
T Consensus        78 VL~~~~~~~~~~~~~~l------~-------------~p~~~~~---l~~~~vaig--dP~~~P~G~~A~E~L~~lgl~~  133 (225)
T TIGR01256        78 VLISPKNSRVVDSLDIL------K-------------KPGWVIV---LKDKTVAIG--DPKHAPYGAAAKEVLQKLGLWE  133 (225)
T ss_pred             EEEECCCCCCCCCHHHH------C-------------CCCEEEE---EECCCCCCC--CCCCCHHHHHHHHHHHHCCCCH
T ss_conf             99853554201302211------3-------------8974899---863702346--8244435799999997079762


Q ss_pred             CCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCC-CHHHHHHHHCCC--CCCCCCCCCCHHHH-CCCCCCCCCCCCCCC
Q ss_conf             41011111013660001344431024664021166-236777631015--32100133200110-011100134457678
Q gi|254780707|r  195 RNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDG-DYTETLARIEVN--KDVFGFVGLSFYKN-NADVLKLVPIDGIVP  270 (346)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~v~~~--~~~igy~~~~~~~~-~~~~~~~~~~~~v~p  270 (346)
                      .-..                         -+.+++ +-.+..+.+...  +-+|.|.+...... +....          
T Consensus       134 ~l~~-------------------------kLV~g~P~vrQA~~~V~~~nA~~GiVa~Sdv~~~~K~~~~v----------  178 (225)
T TIGR01256       134 KLKK-------------------------KLVYGEPDVRQALQFVETGNAPIGIVALSDVIPSGKKVGSV----------  178 (225)
T ss_pred             HHHC-------------------------CEEECCCCHHHHHHHHHHCCCCEEEEEHHEEEECCCCCCEE----------
T ss_conf             5644-------------------------86524888999988877258866687311022000366279----------


Q ss_pred             CHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCC
Q ss_conf             9556027987-50367899970788566889999999974987405220277559
Q gi|254780707|r  271 SMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYG  324 (346)
Q Consensus       271 ~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~G  324 (346)
                        .++-...| |+..|+-+.-+..   ..+..++|++|+-|++++.   ++++.|
T Consensus       179 --~~~p~~ly~Pi~yp~~i~~~g~---n~~~a~~f~dyL~sp~A~~---il~~YG  225 (225)
T TIGR01256       179 --AVIPEDLYKPIKYPAVIVKGGK---NNAAAKAFIDYLKSPEAKE---ILRKYG  225 (225)
T ss_pred             --EEECHHHCCCEEEEEEEEECCC---CHHHHHHHHHHHCCHHHHH---HHHCCC
T ss_conf             --9963312796021178871687---6089999998707964767---863059


No 39 
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=97.19  E-value=0.013  Score=33.28  Aligned_cols=124  Identities=13%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ..+.+|+|+-+.++.. ++..+..+|.+.||++++. +..+.+..-.+.+.+|.    +|||.+..++..          
T Consensus        90 ~~~G~L~Ia~~~t~a~~~LP~~i~~F~~~~P~v~l~-l~~~~~~~i~~~l~~g~----~DlaI~~e~~~~----------  154 (324)
T PRK12681         90 PDKGSLYIATTHTQARYALPPVIKGFIKRYPRVSLH-MHQGSPTQIAEAAAKGE----ADFAIATEALHL----------  154 (324)
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----CCCCCCCCCCCC----------
T ss_conf             876349998535888877259999999878998446-53178799999998799----872312466666----------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                      ..++...|...+..++++.++.|.....                      ...|.|+    .+.|+..+  ..+++++..
T Consensus       155 ~~dl~~~P~~~~~~~vvvp~~HPLa~~~----------------------~itl~dL----~~~plI~~--~~g~~~R~~  206 (324)
T PRK12681        155 YDDLIMLPCYHWNRSVVVPPDHPLAKKK----------------------KLTIEEL----AQYPLVTY--VFGFTGRSE  206 (324)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH
T ss_conf             8874686400032224579999655799----------------------9999998----69985961--499829999


Q ss_pred             HHHHHCCC
Q ss_conf             99885134
Q gi|254780707|r  182 LEKKVLQE  189 (346)
Q Consensus       182 F~~~v~~~  189 (346)
                      +.+.....
T Consensus       207 id~~f~~~  214 (324)
T PRK12681        207 LDTAFNRA  214 (324)
T ss_pred             HHHHHHHC
T ss_conf             99999988


No 40 
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional
Probab=96.98  E-value=0.022  Score=32.04  Aligned_cols=200  Identities=11%  Similarity=0.074  Sum_probs=108.1

Q ss_pred             CCCCCEEEEEEC-CH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf             013767999803-42-5899999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r   22 TFARNRIRIAGS-ST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK   99 (346)
Q Consensus        22 ~~a~~~I~i~GS-st-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~   99 (346)
                      ...+.+|+|+-+ ++ ..-+...+...|.+.||++++. +....|..-.+.+.+|.    +|+|....+...        
T Consensus        87 ~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~-l~~~~~~~l~~~l~~g~----~Dlai~~~~~~~--------  153 (305)
T PRK11233         87 QALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIY-LHENSGAVLNEKLINGQ----LDMAVIYEHSPV--------  153 (305)
T ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCC----EEEEEEECCCCC--------
T ss_conf             78740499999621556653699999999978942999-72388799999987698----479998279898--------


Q ss_pred             CCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH
Q ss_conf             48787246665215412554166654568888888764102555553236730232310011122450354488542357
Q gi|254780707|r  100 HGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR  179 (346)
Q Consensus       100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~  179 (346)
                         ..+...++..+.++++...+.|...++..++                             .+.+  ++.+.++++++
T Consensus       154 ---~~l~~~~l~~~~l~lv~~~~~p~~~i~l~~l-----------------------------~~~~--~i~~~~~~~~r  199 (305)
T PRK11233        154 ---AGVSSQALLKEDLFLVGTQDCPGQSVDLNAI-----------------------------AQMN--LFLPRDYSAVR  199 (305)
T ss_pred             ---CCCEEEEEEECCEEEEECCCCCCCCCCHHHH-----------------------------CCCC--EEECCCCCHHH
T ss_conf             ---8828999985358999847788787899998-----------------------------0899--89879998499


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC-
Q ss_conf             8999885134555654101111101366000134443102466402116623677763101532100133200110011-
Q gi|254780707|r  180 EVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD-  258 (346)
Q Consensus       180 ~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~-  258 (346)
                      ..+.+.....+...                             ..+...++...+...+. ...++++++...+..... 
T Consensus       200 ~~~~~~~~~~~~~~-----------------------------~~~~e~~~~~~i~~~V~-~G~GiailP~~~~~~~~~~  249 (305)
T PRK11233        200 LRVDEAFSLRRLTA-----------------------------KVIGEIESIATLTAAIA-SGMGVTVLPESAARSLCGA  249 (305)
T ss_pred             HHHHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCEEEEEHHHHHHHHHHC
T ss_conf             99999999779998-----------------------------47999996999999999-7997898719999987534


Q ss_pred             -CCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf             -10013445767895560279875036789997078856688999999997498
Q gi|254780707|r  259 -VLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD  311 (346)
Q Consensus       259 -~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~  311 (346)
                       .+..+     .+.       .-++.|+++++..+. ....|++++|++++++-
T Consensus       250 ~~~~~~-----~~~-------~p~~~~~~~l~~~~~-r~lspaa~af~d~L~~~  290 (305)
T PRK11233        250 VNGWMS-----RIT-------TPSMSLSLSLNLSAR-ANLSPQAQAVKEILLSL  290 (305)
T ss_pred             CCEEEE-----ECC-------CCCCEEEEEEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf             976999-----259-------998665999999890-98899999999999997


No 41 
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=96.97  E-value=0.015  Score=32.95  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             924899999999-9999831420137679998034258999999-99999877980799981576205789885210133
Q gi|254780707|r    1 MRFFFVVLMCFV-VLEVYCGTGTFARNRIRIAGSSTLFPYSKII-AENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD   78 (346)
Q Consensus         1 Mk~~~~~~~~~~-~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~-a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~   78 (346)
                      ||+++...++.+ +++.+.+.++.+.++|+|+=.....|+.-.- -..|.+..++.++.=.+-.+...-++++.+|.   
T Consensus         1 ~~~~l~~~la~~~~~~~~~~~~~~~~~~lrIgyq~~~~~~~~~~~~~~~ek~~~~~kV~w~~F~~G~~~~eAl~aG~---   77 (314)
T PRK11553          1 MRNIIKLALAGLLSVSTLAVAAESSPEALRIGYQKGSIGLVLAKSHQLLEKRFPQTKISWVEFPAGPQMLEALNVGS---   77 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHCCC---
T ss_conf             97799999999999987544433489759999617741589998528676617898358997897489999997699---


Q ss_pred             CCCEEECCCC
Q ss_conf             5301213320
Q gi|254780707|r   79 TIDIVNSSRK   88 (346)
Q Consensus        79 ~~dig~ssr~   88 (346)
                       +|||.+...
T Consensus        78 -iD~~~~g~~   86 (314)
T PRK11553         78 -IDLGSTGDI   86 (314)
T ss_pred             -CCEEEECCH
T ss_conf             -754511585


No 42 
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=96.91  E-value=0.025  Score=31.70  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=57.0

Q ss_pred             CCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             137679998034258-9999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ...++|+|+.+.+.. -+...+-..|.+.||++++. +..+.+..-+..+.+|.    +|+|.+..+....         
T Consensus        64 ~~~G~lri~~~~t~~~~~lp~~l~~f~~~~P~v~~~-l~~~~~~~~~~~l~~g~----~D~ai~~~p~~~~---------  129 (269)
T PRK11716         64 SLSGELSLFCSVTAAYSHLPPILDRFRAEHPLVEIK-LTTGDAADAVEKVQSGE----ADLAIAAKPETLP---------  129 (269)
T ss_pred             CCCCCEEEEECHHHHHHHCCHHHHHHHHHCCCCEEE-EECCCHHHHHHHHHCCC----CCEEEEECCCCCC---------
T ss_conf             876626998514887775467899999988894489-84289999999998699----5589993787899---------


Q ss_pred             CCCCEEEEEECCCCEEEECC
Q ss_conf             78724666521541255416
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDR  121 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~  121 (346)
                       ..+...++..+.++++...
T Consensus       130 -~~l~~~~l~~~~l~~v~p~  148 (269)
T PRK11716        130 -SSLAFSPIDEIPLVLIAPA  148 (269)
T ss_pred             -CCEEEEEEEEEEEEEEEEC
T ss_conf             -9769999656418999978


No 43 
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=96.77  E-value=0.014  Score=33.12  Aligned_cols=109  Identities=12%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH-----------HHHHHHHHHHCCCCEEEEEECCCCHHHHH
Q ss_conf             9248999999999999831420137679998034258999-----------99999999877980799981576205789
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYS-----------KIIAENFSEYFPEFKTPFVESGGSSVGLK   69 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~-----------~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~   69 (346)
                      ||+++.++++++++++++...+ +..+|+++.+.+-.|+.           --++++..+.- ++++. +....-..-+.
T Consensus         1 mk~~~~~~~~~~~~~~~~~~~a-~~~~l~Vg~~~~~pPf~f~~~g~~~GfdvDl~~~ia~~l-g~~~e-~~~~~~~~~i~   77 (247)
T PRK09495          1 MKSVLKVSLAALTLAFAVSSHA-ADKELVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKEL-KLDYT-LKPMDFSGIIP   77 (247)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCEEECCCCEEEEEHHHHHHHHHHHH-CCCEE-EEECCHHHHHH
T ss_conf             9779999999999999876651-499499998998798057679927882999999999996-99469-99778899999


Q ss_pred             HHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCC
Q ss_conf             885210133530121332024767876762487872466652154125541666
Q gi|254780707|r   70 EFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus        70 ~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~  123 (346)
                      .+.+|    .+|++.+.-.++++-.+...      +. .|......++++..++
T Consensus        78 ~l~~g----~~D~~~~~~~~T~eR~~~~~------FS-~py~~~~~~i~v~~~~  120 (247)
T PRK09495         78 ALQTK----NIDLALAGITITDERKKAID------FS-DGYYKSGLLVMVKANN  120 (247)
T ss_pred             HHHCC----CCCEEECCCCCCHHHHHHCC------CC-CCCEEEEEEEEEECCC
T ss_conf             99769----95636466014789984333------47-7707724699998999


No 44 
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=96.57  E-value=0.011  Score=33.72  Aligned_cols=124  Identities=17%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             CCCEEEE-EECC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC
Q ss_conf             3767999-8034--258999999999998779807999815762057898852101335301213320247678767624
Q gi|254780707|r   24 ARNRIRI-AGSS--TLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH  100 (346)
Q Consensus        24 a~~~I~i-~GSs--t~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~  100 (346)
                      +...|++ +||.  +=+|+-..+++.+.+..+++...++.++||-.-++.+++|.    +|||++-...   ..+...-.
T Consensus        24 ~~~~itigTG~~~G~YY~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge----~d~alvq~d~---a~~ay~G~   96 (321)
T COG2358          24 EPKFITIGTGSTGGVYYPIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGE----ADLALVQSDV---AYEAYNGT   96 (321)
T ss_pred             CCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCC----CCHHHHHHHH---HHHHHHCC
T ss_conf             7637999606998622303789999985147781899960654299998675376----2535666789---99987185


Q ss_pred             CCC-------CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf             878-------7246665215412554166654568888888764102555553236730232310011122450354488
Q gi|254780707|r  101 GVS-------DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPS  173 (346)
Q Consensus       101 ~~~-------~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~  173 (346)
                      +..       ++..+-..+         +.+..-+++++                 ..|+.|.|+.++      ++..=+
T Consensus        97 g~f~~~~~~~~lr~v~~ly---------pe~~~vv~r~d-----------------~~Ikti~DL~GK------rV~iG~  144 (321)
T COG2358          97 GSFEGKGKDENLRAVAALY---------PEPFHVVTRKD-----------------AGIKTIADLKGK------RVAIGP  144 (321)
T ss_pred             CCCCCCCCCCCHHHHEECC---------CCEEEEEEECC-----------------CCCCEEHHCCCC------EEEECC
T ss_conf             3114566551433221305---------42089999668-----------------896560103898------886269


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             5423578999885
Q gi|254780707|r  174 GKHGTREVLEKKV  186 (346)
Q Consensus       174 ~~SGT~~~F~~~v  186 (346)
                      ++|||...-+..+
T Consensus       145 ~gSgt~~~a~~il  157 (321)
T COG2358         145 PGSGTEATARQIL  157 (321)
T ss_pred             CCCCCHHHHHHHH
T ss_conf             9974088999999


No 45 
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=96.57  E-value=0.038  Score=30.73  Aligned_cols=194  Identities=13%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHH---HHHHHHCCCCCCEEEEEEC
Q ss_conf             5899999999999877980799981576205789885210133530121332024767---8767624878724666521
Q gi|254780707|r   36 LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNE---LDECKKHGVSDIQEVTIGH  112 (346)
Q Consensus        36 ~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E---~~~~~~~~~~~~~~~~v~~  112 (346)
                      .-|++..+ ......+.  ++.   =.||.+|+-.+..|.    .||+..--.-.+.-   ..-.++........+....
T Consensus         5 ~D~~ld~~-~~~~~~~~--~~~---~vGS~gG~~~i~~G~----adiag~hlld~~~g~ynip~v~~~~~~~~~LI~g~~   74 (223)
T COG1910           5 HDPLLDIL-IKEAGETA--KTV---YVGSMGGLLAIKRGE----ADIAGIHLLDNESGTYNIPYVKKYLPGEAVLIRGYL   74 (223)
T ss_pred             CCHHHHHH-HHHCCCCC--CEE---EECCCCCHHHHHHCC----CCEEEEEECCCCCCCEEHHHHHHCCCCCEEEEEEEE
T ss_conf             41788887-64152345--068---860445547666254----514442132577874423004230788469985366


Q ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             54125541666545688888887641025555532367302323100111224503544885423578999885134555
Q gi|254780707|r  113 DGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCV  192 (346)
Q Consensus       113 d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~  192 (346)
                      =-..+++.+.||                         -.++.|.|+    .+.+++.+.|+.+|||+..|.+++......
T Consensus        75 Re~Gl~v~~gnp-------------------------k~i~~~edl----~~~d~~fVNR~rGSGTR~LlD~~L~~~~~~  125 (223)
T COG1910          75 REQGLMVQKGNP-------------------------KNISSLEDL----LRKDLRFVNRNRGSGTRILLDELLGELNIL  125 (223)
T ss_pred             EEEEEEEECCCC-------------------------CCCCCHHHH----HHCCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             510368864897-------------------------766249988----526757871589965899999999873767


Q ss_pred             CCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             65410111110136600013444310246640211662367776310153210013320011001110013445767895
Q gi|254780707|r  193 RSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSM  272 (346)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~  272 (346)
                      .               +...+         +.. ..-....+..+++...--+|.-                   +.+..
T Consensus       126 ~---------------~~I~G---------Y~~-e~~th~avA~aVa~G~AD~GvG-------------------lr~~A  161 (223)
T COG1910         126 P---------------DSIKG---------YSD-EATTHDAVASAVASGRADAGVG-------------------LRHAA  161 (223)
T ss_pred             C---------------HHCCC---------CCC-CCCCCHHHHHHHHCCCCCCCCC-------------------HHHHH
T ss_conf             0---------------10578---------432-3212089999997589872501-------------------79999


Q ss_pred             HHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHH
Q ss_conf             5602798750367899970788566889999999974987
Q gi|254780707|r  273 GTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDE  312 (346)
Q Consensus       273 ~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~  312 (346)
                      +.---.=+||.+.-|=++-.+..-..|.+|+|++-.-|++
T Consensus       162 ~~~gL~Fipl~~E~YD~virke~~~~~~vr~fi~~L~s~~  201 (223)
T COG1910         162 EKYGLDFIPLGDEEYDFVIRKERLDKPVVRAFIKALKSEG  201 (223)
T ss_pred             HHCCCCEEECCCCEEEEEEEHHHCCCHHHHHHHHHHCCCC
T ss_conf             9849851774562578998456705888999999861212


No 46 
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=96.56  E-value=0.046  Score=30.22  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHH--HHHCCCCCC-CCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf             924899999999999--983142013-7679998-034258999999999998779807999815762057898852101
Q gi|254780707|r    1 MRFFFVVLMCFVVLE--VYCGTGTFA-RNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIG   76 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~--~~~~~~~~a-~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~   76 (346)
                      ||+.+.++.+.+++.  +.++.++.+ ...|++= ++..-.+.++.++++|.+++ +++|. ++...  .=..+|.....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltvW~~~~~~~~~l~~~~~~Fe~~~-gi~V~-v~~~~--~~~~kl~~a~~   76 (394)
T PRK09474          1 IKKGLRILALSALTTLMLSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDT-GIKVT-VEHPD--KLEEKFPQVAA   76 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CCEEE-EECCH--HHHHHHHHHHC
T ss_conf             9415889999999999973643245667869999579705699999999974540-97799-97102--68999997420


Q ss_pred             C-CCCCEEECCC-------------CCCHHHH--HHHHH------CCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf             3-3530121332-------------0247678--76762------4878724666521541255416665
Q gi|254780707|r   77 D-DTIDIVNSSR-------------KITQNEL--DECKK------HGVSDIQEVTIGHDGILLVSDRDMV  124 (346)
Q Consensus        77 ~-~~~dig~ssr-------------~l~~~E~--~~~~~------~~~~~~~~~~v~~d~i~i~~n~~~~  124 (346)
                      . ...||...+.             |+++.+.  .....      .....+-.+|+..+..+++||++..
T Consensus        77 ~G~~PDv~~~~~~~~~~~a~~G~l~pl~~~~~~~~~~~~~~~~a~tydGk~YgvP~~~~t~~L~YNKdl~  146 (394)
T PRK09474         77 TGDGPDIIFWAHDRFGGYAQSGLLAEVTPSKAFQDKLVPFTWDAVRYNGKLIGYPIAVEALSLIYNKDLV  146 (394)
T ss_pred             CCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHCEEECCEEEEECCCCCCEEEEEEHHHC
T ss_conf             7999958998847699999789866388564445304633452468898888863012230688740003


No 47 
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=96.44  E-value=0.055  Score=29.80  Aligned_cols=116  Identities=17%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH-HHHHHHCCCCC
Q ss_conf             248999999999999831420137679998-0342589999999999987798079998157620578-98852101335
Q gi|254780707|r    2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGL-KEFCRGIGDDT   79 (346)
Q Consensus         2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi-~~~~~G~~~~~   79 (346)
                      |+++..++++.++.+++.+++++++++++- =+.-+-   ..+.+.|++++ |++| ++.--+|..-. ..+.+|.  ..
T Consensus         6 ~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Yi~---p~~i~~Feket-GikV-~~~~~~snee~~akl~ag~--~g   78 (370)
T PRK10682          6 KKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIA---PDTVANFEKET-GIKV-VYDVFDSNEVLEGKLMAGS--TG   78 (370)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCC---HHHHHHHHHHH-CCEE-EEEECCCHHHHHHHHHCCC--CC
T ss_conf             8899999999999985205664279799981676579---77999999997-9889-9995499899999996699--99


Q ss_pred             CCEEECCCCCCH-------------HHHHHH-----------HHCCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf             301213320247-------------678767-----------624878724666521541255416665
Q gi|254780707|r   80 IDIVNSSRKITQ-------------NELDEC-----------KKHGVSDIQEVTIGHDGILLVSDRDMV  124 (346)
Q Consensus        80 ~dig~ssr~l~~-------------~E~~~~-----------~~~~~~~~~~~~v~~d~i~i~~n~~~~  124 (346)
                      .|+...|..+-+             ..+...           ...-....-.+|...+...|+||.+-.
T Consensus        79 yDvv~ps~~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v  147 (370)
T PRK10682         79 FDLVVPSASFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKV  147 (370)
T ss_pred             CCEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCC
T ss_conf             988997779999999769846477000867444299988410036999759988884225999976544


No 48 
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=96.04  E-value=0.092  Score=28.57  Aligned_cols=92  Identities=10%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf             20137679998034258-99999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r   21 GTFARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK   99 (346)
Q Consensus        21 ~~~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~   99 (346)
                      ....+++|+|+-+.++. -++..+...|.+.||++++. +....+..-+..+.+|.    +||+.......+..      
T Consensus        90 ~~~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-i~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~------  158 (302)
T PRK09791         90 QGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVR-IMEGQLVSMINELRQGE----LDFTINTYYQGPYD------  158 (302)
T ss_pred             HCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCC------
T ss_conf             06766339998626889871199999999988797799-99899999999998799----77899656788788------


Q ss_pred             CCCCCCEEEEEECCCCEEEECCCCCCC
Q ss_conf             487872466652154125541666545
Q gi|254780707|r  100 HGVSDIQEVTIGHDGILLVSDRDMVSV  126 (346)
Q Consensus       100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~  126 (346)
                         ..+...++..+..+++.+++.|..
T Consensus       159 ---~~l~~~~l~~~~~~~v~~~~hpl~  182 (302)
T PRK09791        159 ---HEFTFEKLLEKQFAIFCRPGHPAI  182 (302)
T ss_pred             ---CCEEEEEEEEEEEEEEECCCCCCC
T ss_conf             ---764799977401599983898435


No 49 
>TIGR00971 3a0106s03 sulfate ABC transporter, sulfate-binding protein; InterPro: IPR005669   Thiosulphate-binding proteins (gene cysP) specifically binds thiosulphate and are involved in the transport systems for this nutrients , . There are two conserved regions in the protein, one located in the N-terminal region and the other in the central part of these proteins. The second pattern includes two adjacent amino acids (Ser-Gly) that, in sbp, are known to be essential for sulphate binding . ; GO: 0015419 sulfate transmembrane-transporting ATPase activity, 0008272 sulfate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=95.84  E-value=0.11  Score=28.08  Aligned_cols=249  Identities=14%  Similarity=0.153  Sum_probs=123.2

Q ss_pred             EEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHCCCCCCCEEECC-------C-CCCHHHHHHH
Q ss_conf             9998034258999999-9999987798079998157-620578988521013353012133-------2-0247678767
Q gi|254780707|r   28 IRIAGSSTLFPYSKII-AENFSEYFPEFKTPFVESG-GSSVGLKEFCRGIGDDTIDIVNSS-------R-KITQNELDEC   97 (346)
Q Consensus        28 I~i~GSst~~P~~~~~-a~~y~~~~~~~~~~~~~~~-GSg~Gi~~~~~G~~~~~~dig~ss-------r-~l~~~E~~~~   97 (346)
                      ++.+-|=-++--++.- .....+.+++.++.+-|+- |||.=--.++.|...+.+-.+.+-       | .|=+.++.+.
T Consensus        19 ~SYD~~RELy~~~N~~F~~~W~~~~GGD~~~i~QSH~gs~KQA~~v~~G~~ADvVT~~~~~DV~~~~~~G~lI~~~W~~r   98 (320)
T TIGR00971        19 VSYDVTRELYEQYNKAFEAHWKKDTGGDKVVIKQSHGGSGKQALSVLNGLEADVVTLALAYDVQILAERGRLIDKDWIKR   98 (320)
T ss_pred             CCCCHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             23331069998718157875666448954789742688606889987001255778888876899984387365468862


Q ss_pred             HHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCC-
Q ss_conf             6248787246665215412554166654568888888764102555553236730232310011122450354488542-
Q gi|254780707|r   98 KKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKH-  176 (346)
Q Consensus        98 ~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~S-  176 (346)
                      ....-.+      -+..+++.|-+.||                         ..|..|+|+=    ...+.++.|++.| 
T Consensus        99 LP~NS~P------y~ST~~FLVRKGNP-------------------------K~I~DWnDL~----~~~v~~I~PNPK~S  143 (320)
T TIGR00971        99 LPDNSAP------YTSTIVFLVRKGNP-------------------------KQIHDWNDLI----KPGVSVITPNPKSS  143 (320)
T ss_pred             CCCCCCC------CCEEEEEEEECCCC-------------------------CCCCCHHHHH----HCCCEEEECCCCCC
T ss_conf             8787886------20133556754798-------------------------9646513463----35875860788986


Q ss_pred             C-HHHHHH----HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             3-578999----88513455565410111110136600013444310246640211662367776310153210013320
Q gi|254780707|r  177 G-TREVLE----KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLS  251 (346)
Q Consensus       177 G-T~~~F~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~  251 (346)
                      | .+-.+.    ....+.......+..-.....+              +    ++.. +.++=...-.=...+||-+=++
T Consensus       144 G~AR~~YLaAWG~A~~~~~~D~aK~~~F~~~l~K--------------N----vEVl-D~G~RGaT~TF~ERG~GDVLI~  204 (320)
T TIGR00971       144 GGARYNYLAAWGYALHADNGDKAKAEQFVKALLK--------------N----VEVL-DSGARGATNTFVERGLGDVLIA  204 (320)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--------------C----EEEE-ECCCCCCCCCHHHCCCCHHHHH
T ss_conf             4157899998766751378762458999999850--------------1----0332-0688865210111063300134


Q ss_pred             HHHHCCCCCCCC---CCCCCCCCHHHHCCCCCCCEEEEEEEEEC--CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCC
Q ss_conf             011001110013---44576789556027987503678999707--8856688999999997498740522027755963
Q gi|254780707|r  252 FYKNNADVLKLV---PIDGIVPSMGTIVSGLYPISRPLLFYVKR--QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLI  326 (346)
Q Consensus       252 ~~~~~~~~~~~~---~~~~v~p~~~~i~~g~YPl~r~ly~yv~~--~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~Gyv  326 (346)
                      +..+....-..+   ..+-|.|+. +|.. ..|.+     .|.+  +..++....++||+|++|.++|.   ++...=|=
T Consensus       205 ~E~E~~~~~~~~~~~~FE~V~P~~-~ILA-E~~V~-----~VDK~V~~~~T~~~A~AYL~yLYSP~~Q~---I~~~~yYR  274 (320)
T TIGR00971       205 FENEALLIRKELEKDKFEIVIPSE-SILA-EPTVS-----VVDKVVEKKGTKKVAEAYLKYLYSPEGQE---IIAKNYYR  274 (320)
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCC-CCCC-CCCEE-----EEECCCCCCCHHHHHHHHHHHHCCCCHHH---HHHHCCCC
T ss_conf             578899999963348726864774-3213-56503-----57433032345899999997404941356---76542678


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             48999999999999
Q gi|254780707|r  327 PISNEERKSVRDSI  340 (346)
Q Consensus       327 PLp~~~~~~~~~~~  340 (346)
                      |=.+++.+|...++
T Consensus       275 ~~~~~v~~K~~~~F  288 (320)
T TIGR00971       275 VRDAEVAKKYEDKF  288 (320)
T ss_pred             CCCHHHHHHHHCCC
T ss_conf             88888986775168


No 50 
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=95.62  E-value=0.14  Score=27.58  Aligned_cols=196  Identities=11%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC--CCCCHHHHHHHHHCC
Q ss_conf             7679998034258-9999999999987798079998157620578988521013353012133--202476787676248
Q gi|254780707|r   25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS--RKITQNELDECKKHG  101 (346)
Q Consensus        25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss--r~l~~~E~~~~~~~~  101 (346)
                      ..+|+++-++++. .++..+..+|.+.||++++. +....+..-++.+.+|.    +||+...  .+....         
T Consensus        96 ~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~~---------  161 (312)
T PRK10341         96 VVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVS-MYEAQLSSFLPAIRDGR----LDFAIGTLSNEMKLQ---------  161 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CEEEEEECCCCCCCC---------
T ss_conf             3257435406889999999999999988897799-99899999999996698----619997436877778---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                        .+...++..+..+++.++..+...                        ..+|.++.    +.+  .+.+..+++.+..
T Consensus       162 --~~~~~~l~~~~~~lv~~~~~p~~~------------------------~~~l~~L~----~~~--~il~~~~~~~~~~  209 (312)
T PRK10341        162 --DLHVEPLFESEFVLVASKSRTCTG------------------------TTTLESLK----NEQ--WVLPQTNMGYYSE  209 (312)
T ss_pred             --CEEEEEEECCCEEEEECCCCCCCC------------------------CCCHHHHC----CCC--EEEECCCCCHHHH
T ss_conf             --749999512428999767542348------------------------97989980----798--6860699858999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHH-CCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110-01110
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKN-NADVL  260 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~-~~~~~  260 (346)
                      +.+.....+-..                             ..+-..++...+.+.+. ....|+.++...... ....+
T Consensus       210 ~~~~~~~~g~~~-----------------------------~~~~~~~s~~~i~~lv~-~g~gi~~lP~~~~~~~~~~~L  259 (312)
T PRK10341        210 LLTTLQRNGISI-----------------------------ENIVKTDSVVTIYNLVL-NADFLTVIPCDMTSPFGSNQF  259 (312)
T ss_pred             HHHHHHHCCCCC-----------------------------CCEEEECHHHHHHHHHH-HCCEEEEEHHHHHHHHCCCCE
T ss_conf             999999769998-----------------------------81699890999999999-799589726999966318989


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             0134457678955602798750-3678999707885668899999999749
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPI-SRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl-~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      ..+++             ..|+ .+.++++.++ +....++++.|++++-.
T Consensus       260 ~~lpl-------------~~~~~~~~~~lv~~k-~~~ls~a~~~fie~~ke  296 (312)
T PRK10341        260 ITIPI-------------KETLPVARYAAVWSK-NYRIKKAASVLVELAKE  296 (312)
T ss_pred             EEEEC-------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf             99989-------------998851189999989-39889999999999998


No 51 
>PRK11260 cystine transporter subunit; Provisional
Probab=95.36  E-value=0.17  Score=27.05  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC----------CEEEEEECCHHHHHH------------HHHHHHHHHHCCCCEEEEEE
Q ss_conf             48999999999999831420137----------679998034258999------------99999999877980799981
Q gi|254780707|r    3 FFFVVLMCFVVLEVYCGTGTFAR----------NRIRIAGSSTLFPYS------------KIIAENFSEYFPEFKTPFVE   60 (346)
Q Consensus         3 ~~~~~~~~~~~l~~~~~~~~~a~----------~~I~i~GSst~~P~~------------~~~a~~y~~~~~~~~~~~~~   60 (346)
                      +..++.++.+++.++|+.++.+.          .+|+++-...--|+.            -.+++++.+.- ++++. +.
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~d~~G~~~GfdvDl~~~ia~~l-g~~~e-~~   83 (264)
T PRK11260          6 RQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLTGFEVEFAEALAKHL-GVKAS-LK   83 (264)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHH-CCCEE-EE
T ss_conf             99999999999999835765434243999986998999977898893689999998887199999999984-99569-99


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCC
Q ss_conf             5762057898852101335301213320247678767624878724666521541255416665
Q gi|254780707|r   61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMV  124 (346)
Q Consensus        61 ~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~  124 (346)
                      ......-+..+.+|.    +|+.++.-.++++-.+..      .+ ..|.......+++..+++
T Consensus        84 ~~~~~~~i~~L~~g~----~Di~~~~~t~T~eR~~~~------~F-s~PY~~~~~~~~v~~~~~  136 (264)
T PRK11260         84 PTKWDGMLASLDSKR----IDVVINQVTISDERKKKY------DF-STPYTVSGIQALVKKGNE  136 (264)
T ss_pred             ECCHHHHHHHHHCCC----CCEEECCCCCCHHHHHHC------CC-CCCEEEEEEEEEEECCCC
T ss_conf             788899999986699----466725753588888517------76-774377445999987897


No 52 
>PRK12680 transcriptional regulator CysB-like protein; Reviewed
Probab=94.97  E-value=0.23  Score=26.38  Aligned_cols=124  Identities=13%  Similarity=0.098  Sum_probs=79.2

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ....+++|+-..++.. +.-.....|.+.||++++. +..+.+..-.+.+.+|.    +|||....+..+.+        
T Consensus        90 ~~~G~L~Ig~~~t~a~~~LP~vi~~f~~~yP~V~l~-l~~~~~~~l~e~l~~g~----~Diai~~~~~~~~~--------  156 (327)
T PRK12680         90 ESQGQLTLTTTHTQARFVLPPAVAQIKQAYPQVSVH-LQQAAESAALDLLGQGD----ADIAVVSTAGGEPS--------  156 (327)
T ss_pred             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCCC--------
T ss_conf             873379999842277775689999999868996799-99898288999997899----40999447777997--------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                        ....++......++++..+.|....                     .+...|.++    .+.|+..+.  .++..+..
T Consensus       157 --~~~~~pl~~~~~~vvvP~~HpL~~~---------------------~~~i~L~~L----a~~plI~~~--~g~~~r~~  207 (327)
T PRK12680        157 --AGIAVPLYRWRRLVVVPRGHALDTP---------------------RTAPDMAAL----AEHPLISYD--SSTRPGSS  207 (327)
T ss_pred             --CCEEEEEEECCEEEEEECCCCCCCC---------------------CCCCCHHHH----HCCCEEECC--CCCCHHHH
T ss_conf             --6547675223579999789810058---------------------999999998----089889638--99867999


Q ss_pred             HHHHHCC
Q ss_conf             9988513
Q gi|254780707|r  182 LEKKVLQ  188 (346)
Q Consensus       182 F~~~v~~  188 (346)
                      +.+....
T Consensus       208 id~af~~  214 (327)
T PRK12680        208 LQRAFAQ  214 (327)
T ss_pred             HHHHHHH
T ss_conf             9999997


No 53 
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=94.85  E-value=0.24  Score=26.20  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             CCCCCHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf             76789556027987-5036789997078856688999999997498740522027755963489999999
Q gi|254780707|r  267 GIVPSMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS  335 (346)
Q Consensus       267 ~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~  335 (346)
                      +|.|-+.--....+ |++-+.-.+|+..+. ......+|+.|+...+.+.  ......+.+|..-+.+..
T Consensus       284 GvaplP~~~~g~~~~pf~Gv~~~~Vsa~sk-n~~~A~~f~~~~t~~~~~~--~~~~~~~~ipa~~~~~~~  350 (420)
T COG2182         284 GVAPLPTLNNGKKPKPFSGVKGYVVSAASK-NKEAAAKFVKYFTNPKNQK--LLYDEAGEIPANKAARND  350 (420)
T ss_pred             CEEECCCCCCCCCCCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHH
T ss_conf             454168778888867665524889648897-6899999999866489999--888755874446775430


No 54 
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=94.79  E-value=0.25  Score=26.12  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             CEEEEEECCHHHHH----------------HHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf             67999803425899----------------999999999877--980799981576205789885210133530121332
Q gi|254780707|r   26 NRIRIAGSSTLFPY----------------SKIIAENFSEYF--PEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR   87 (346)
Q Consensus        26 ~~I~i~GSst~~P~----------------~~~~a~~y~~~~--~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr   87 (346)
                      .+|+++=-.+-.||                .++++++..++-  +++++. .....+..-|..+.+|.    +|+.+++-
T Consensus        40 G~l~vG~~~~~pPf~~~d~~g~~vGfdvDla~~ia~~l~~~l~~~~~~v~-~v~~~~~~rip~L~~gk----~Di~~~~~  114 (302)
T PRK10797         40 GVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK-LIPITSQNRIPLLQNGT----FDFECGST  114 (302)
T ss_pred             CEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECC
T ss_conf             98999989998997168999985154179999999999877446773499-99757888779997898----08897357


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCC
Q ss_conf             02476787676248787246665215412554166654
Q gi|254780707|r   88 KITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVS  125 (346)
Q Consensus        88 ~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~  125 (346)
                      .++++=.+..      .+ ..|.......+++.+++++
T Consensus       115 t~T~eR~k~v------dF-S~pY~~~~~~llv~k~s~I  145 (302)
T PRK10797        115 TNNLERQKQA------AF-SDTIFVVGTRLLTKKGGDI  145 (302)
T ss_pred             CCCHHHHCCE------EE-CCCCEECCEEEEEECCCCC
T ss_conf             5697774124------21-4662771468999778866


No 55 
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=94.21  E-value=0.35  Score=25.35  Aligned_cols=80  Identities=11%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             CCCEEEEEECCH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342-5899999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      .+..++|+=+.+ .......+-..|.+.||++.+. +....   ....+..+.    +||+..--+..+.          
T Consensus        92 ~~g~l~I~~~~~~~~~~l~p~l~~f~~~~P~i~v~-l~~~~---~~~~l~~~~----~Diai~~~~~~~~----------  153 (295)
T PRK11139         92 AKGALTVSLLPSFAIKWLVPRLSSFNEAHPDIDVR-LQAVD---RLEDFLRDD----VDVAIRYGRGNWP----------  153 (295)
T ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEE-EEECC---CHHHHHCCC----CEEEEEEECCCCC----------
T ss_conf             78739999963227776334666666108858999-99624---166663347----4389997237767----------


Q ss_pred             CCCEEEEEECCCCEEEECCC
Q ss_conf             87246665215412554166
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRD  122 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~  122 (346)
                       .+...++..+.+.++.+++
T Consensus       154 -~l~~~~l~~~~~~~vasp~  172 (295)
T PRK11139        154 -GLRVEKLLDEYLFPVCSPA  172 (295)
T ss_pred             -CEEEEEEECCEEEEEECHH
T ss_conf             -6279994044699998879


No 56 
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional
Probab=93.68  E-value=0.44  Score=24.77  Aligned_cols=121  Identities=9%  Similarity=0.029  Sum_probs=69.4

Q ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             37679998034258-99999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ..++|+|+.+.++. -++..+...|.+.||++.+. +....+..=.+.+.+|.    +|+|....+..+..         
T Consensus        92 ~~G~lri~~~~~~~~~~lp~~l~~f~~~~P~v~v~-i~~~~~~~~~~~l~~~~----~Dl~l~~~~~~~~~---------  157 (309)
T PRK11013         92 RQGQLSIACLPVFSQSLLPGLCQPFLARYPDVSLN-IVPQESPLLEEWLSAQR----HDLGLTETLHTPAG---------  157 (309)
T ss_pred             CCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEEECCCCCCC---------
T ss_conf             36765653006789886652315678438980799-99898599999997599----77899607889987---------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                        ....++..+..+++...+.|...                      .+...|.|+.    +.|...  .+.+++.+..+
T Consensus       158 --~~~~~l~~~~~~~v~~~~hpla~----------------------~~~i~~~dL~----~~~~i~--~~~~~~~r~~~  207 (309)
T PRK11013        158 --TERTELLTLDEVCVLPDGHPLAA----------------------KKVLTPDDFQ----GENFIS--LSRTDSYRQLL  207 (309)
T ss_pred             --CEEEEEEEEEEEEECCCCCCCCC----------------------CCCCCHHHHC----CCCEEE--CCCCCCHHHHH
T ss_conf             --57888642014675478980004----------------------9999999973----898696--38999499999


Q ss_pred             HHHHCC
Q ss_conf             988513
Q gi|254780707|r  183 EKKVLQ  188 (346)
Q Consensus       183 ~~~v~~  188 (346)
                      .+....
T Consensus       208 ~~~~~~  213 (309)
T PRK11013        208 DQLFAE  213 (309)
T ss_pred             HHHHHH
T ss_conf             999997


No 57 
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=92.92  E-value=0.59  Score=24.08  Aligned_cols=282  Identities=14%  Similarity=0.105  Sum_probs=119.5

Q ss_pred             CCHHHH---HHHHHHHHHHHHC-CCCCC-CCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHH
Q ss_conf             924899---9999999999831-42013-7679998-034258999999999998779807999815762-057898852
Q gi|254780707|r    1 MRFFFV---VLMCFVVLEVYCG-TGTFA-RNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGS-SVGLKEFCR   73 (346)
Q Consensus         1 Mk~~~~---~~~~~~~l~~~~~-~~~~a-~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GS-g~Gi~~~~~   73 (346)
                      ||++..   +++++.+++++.. ..+.+ .+++++. =+....|-   +.+.|.+++ ++++ ++....| ......+..
T Consensus         2 ~k~~~~~~~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~~~---~~~~F~k~t-Gi~V-~~~~~~sne~~~ak~~~   76 (363)
T COG0687           2 MKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPA---LLKPFEKET-GIKV-VYDTFDSNEEMLAKLKA   76 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCCHH---HHHHHHHHH-CCEE-EEECCCCHHHHHHHHHH
T ss_conf             414666678999999999860004566257859996478755778---899899998-9979-99538986999999980


Q ss_pred             HCCCCCCCEEECCCCCCH-------------HHHHH------H-HHCC---CCCCEEEEEECCCCEEEECCCCCCCCCCH
Q ss_conf             101335301213320247-------------67876------7-6248---78724666521541255416665456888
Q gi|254780707|r   74 GIGDDTIDIVNSSRKITQ-------------NELDE------C-KKHG---VSDIQEVTIGHDGILLVSDRDMVSVSLTV  130 (346)
Q Consensus        74 G~~~~~~dig~ssr~l~~-------------~E~~~------~-~~~~---~~~~~~~~v~~d~i~i~~n~~~~~~~lt~  130 (346)
                      |..  ..|+...|-..-.             ..+..      . ....   ....-.+|.-.+..+++||.+....    
T Consensus        77 g~~--~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~----  150 (363)
T COG0687          77 GGG--GYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKD----  150 (363)
T ss_pred             CCC--CCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEECEEEEEEEEEEEEECCCCCC----
T ss_conf             899--98879718889999986675675896666482116987835776788886031678864699998000589----


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHCCC-C-CCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             888876410255555323673023231001-1-12245035448854235789998851345556541011111013660
Q gi|254780707|r  131 EDLYKALASYLIVDDKVVFNPLKKWSEIRP-D-FPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNV  208 (346)
Q Consensus       131 ~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~-~-lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~  208 (346)
                                        ..+.++|.++-. . +|...=..+.-.+.........-..+...... .......       
T Consensus       151 ------------------~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~-~~~~~~~-------  204 (363)
T COG0687         151 ------------------APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNT-TDPEDLK-------  204 (363)
T ss_pred             ------------------CCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCHHHHH-------
T ss_conf             ------------------99998899983842002232575301366057899999971899788-9988999-------


Q ss_pred             HHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCC--CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf             001344431024664021166236777631015321--001332001100111001344576789556027987503678
Q gi|254780707|r  209 QQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDV--FGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPL  286 (346)
Q Consensus       209 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~--igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~l  286 (346)
                      +. .......+.   .+....+..+..+.+....-.  .+|.+-.....+  ......+..+.|.     .|++-+.  -
T Consensus       205 ~a-~~~L~~~kp---~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~--~~~~~~i~~~~p~-----eG~~~w~--D  271 (363)
T COG0687         205 KA-FDLLDKLKP---VNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKA--AKNGAPIEFVIPK-----EGSILWF--D  271 (363)
T ss_pred             HH-HHHHHHHCC---CEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHH--CCCCCEEEEECCC-----CCCEEEE--E
T ss_conf             99-999997278---50899636278889866997899977778999862--5589805773478-----8734787--8


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf             9997078856688999999997498740522027755963489999999
Q gi|254780707|r  287 LFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS  335 (346)
Q Consensus       287 y~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~  335 (346)
                      ++.+.+... ..++..+|++|++..+.|..  +....||.|--.+.+..
T Consensus       272 ~~~ipk~a~-n~~~A~~fInf~~~pe~~a~--~~~~~~y~~~n~~a~~~  317 (363)
T COG0687         272 NLAIPKGAK-NVDAAYKFINFLLDPEVAAK--LAEFVGYAPPNKAARKL  317 (363)
T ss_pred             EEEEECCCC-CHHHHHHHHHHHCCHHHHHH--HHHHHCCCCCCHHHHHH
T ss_conf             899879999-98999999998519899999--98732678888777754


No 58 
>PRK09701 D-allose transporter subunit; Provisional
Probab=90.90  E-value=1  Score=22.75  Aligned_cols=99  Identities=10%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHH---HHHHHCCCCEEEEEE--CCCCHHHHHHHHHHC
Q ss_conf             924899999999999983142013767999803425899999999---999877980799981--576205789885210
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAE---NFSEYFPEFKTPFVE--SGGSSVGLKEFCRGI   75 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~---~y~~~~~~~~~~~~~--~~GSg~Gi~~~~~G~   75 (346)
                      ||+++.++..+++..++ ++.++++.+|-+.=.+.-.|++....+   ...+++ ++++.++.  +.+.-...-+.++..
T Consensus         1 m~k~~~~~~~~~~~~~~-~~~a~a~~~iavi~k~~~npf~~~~~~Ga~~aAk~~-G~~v~v~~~~~~~D~~~Qi~~Ie~~   78 (311)
T PRK09701          1 MNKYLKYFSGTLVGLML-STSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTL-GVSVDIFASPSEGDFQSQLQLFEDL   78 (311)
T ss_pred             CCHHHHHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHH-CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             93699999999999998-887743684999968889989999999999999986-9979999279878999999999999


Q ss_pred             CCCCCCEEECCCCCCHH----HHHHHHHCCC
Q ss_conf             13353012133202476----7876762487
Q gi|254780707|r   76 GDDTIDIVNSSRKITQN----ELDECKKHGV  102 (346)
Q Consensus        76 ~~~~~dig~ssr~l~~~----E~~~~~~~~~  102 (346)
                      ....+|-=. =.|..+.    -++++.+.++
T Consensus        79 I~~gvdaIi-i~p~d~~a~~~~i~~A~~aGI  108 (311)
T PRK09701         79 SNKNYKGIA-FAPLSSVNLVMPVARAWKKGI  108 (311)
T ss_pred             HHCCCCEEE-EECCCHHHHHHHHHHHHHCCC
T ss_conf             975999999-918987788999999997799


No 59 
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=89.93  E-value=1.2  Score=22.26  Aligned_cols=87  Identities=18%  Similarity=0.115  Sum_probs=43.4

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCCCCCC-CEEEEEECC----HHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHH
Q ss_conf             924899999999-9999831420137-679998034----2589999999999987798-07999815762057898852
Q gi|254780707|r    1 MRFFFVVLMCFV-VLEVYCGTGTFAR-NRIRIAGSS----TLFPYSKIIAENFSEYFPE-FKTPFVESGGSSVGLKEFCR   73 (346)
Q Consensus         1 Mk~~~~~~~~~~-~l~~~~~~~~~a~-~~I~i~GSs----t~~P~~~~~a~~y~~~~~~-~~~~~~~~~GSg~Gi~~~~~   73 (346)
                      |+++.....+++ +++++++..+.+. .+++..-..    ...-.+..+++.-.++.+| +++. +-+.|+=++=++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~p~~~~~~~fa~~v~ekt~G~l~i~-vfP~~qLG~~~~~ie   79 (332)
T COG1638           1 MMKLLALLLALLLAAAALASAAAAAGALVLRFSHVTPEGHPKGKAAKKFAELVEEKTGGRLKIE-VFPNSQLGGEAEMIE   79 (332)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCHHHHHH
T ss_conf             9513789999999999977778740154887523579988078999999999998719938999-766756687699999


Q ss_pred             HCCCCCCCEEECCCC
Q ss_conf             101335301213320
Q gi|254780707|r   74 GIGDDTIDIVNSSRK   88 (346)
Q Consensus        74 G~~~~~~dig~ssr~   88 (346)
                      ++..+.+||+..|-.
T Consensus        80 ~l~~G~id~~~~s~~   94 (332)
T COG1638          80 QLRSGTLDIGVVSLG   94 (332)
T ss_pred             HHHCCCCEEEECCCH
T ss_conf             996597307850652


No 60 
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=89.63  E-value=1.3  Score=22.13  Aligned_cols=57  Identities=16%  Similarity=-0.060  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHHCCCCC
Q ss_conf             01376799980342589-999999999987798079998157620-57898852101335
Q gi|254780707|r   22 TFARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSS-VGLKEFCRGIGDDT   79 (346)
Q Consensus        22 ~~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg-~Gi~~~~~G~~~~~   79 (346)
                      +.+..+|+|++=.+.-+ +.-.+....-+.| +.++......|+. .=++++.+|..+-.
T Consensus        29 ~~~~~~I~VgsK~~tE~~IL~~m~~~lle~~-~~kv~~~~~lG~t~v~~~Al~~G~IDiY   87 (300)
T COG1732          29 ASAAKTIVVGSKIFTEQYILGNILKQLLEKN-GIKVEDKTGLGGTAVVRNALKSGDIDIY   87 (300)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCCCEE
T ss_conf             2357887983477838899999999999865-9914541688852999999975987768


No 61 
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=89.00  E-value=1.5  Score=21.86  Aligned_cols=58  Identities=12%  Similarity=0.117  Sum_probs=34.4

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             1376799980342589-99999999998779807999815762057898852101335301213320
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRK   88 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~   88 (346)
                      ....+|+++.+.++.. +...+...|.+.||++.+..+ .+-+   ...+..+.    +|++..-.+
T Consensus        86 ~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~v~l~-~~~~---~~~~~~~~----~Dlai~~~~  144 (291)
T TIGR03418        86 REHETLTLATDFAFATYWLMPRLHRFKRAMPDVDVSLV-TSQD---SLDPQRDD----IDVAILFGD  144 (291)
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEE-ECCC---HHHHHCCC----CCEEEEECC
T ss_conf             66782488514388777756876789986898079999-5474---04543278----738999647


No 62 
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=88.91  E-value=1.5  Score=21.83  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ....+++|+-++.+.. +...+...|.+.+|++.+. +....+......+.+|.    +||+....+..+.         
T Consensus       109 ~~~~~~~i~~~~~~~~~llp~ll~~~~~~~P~v~l~-~~~~~~~~~~~~L~~g~----iDl~I~~~~~~~~---------  174 (314)
T PRK09508        109 SSERVFNLCICSPLDNRLASQIYNRIEQIAPNIHLV-FKSSLNQNIEHQLRYQE----TEFVISYEEFDRP---------  174 (314)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCC---------
T ss_conf             047369999630789999999999999868997799-98577064999997699----5299967877998---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCC--CCHHHH
Q ss_conf             78724666521541255416665456--888888
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVS--LTVEDL  133 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~--lt~~~l  133 (346)
                        .+...++..|..+++..++.|...  ++.+++
T Consensus       175 --~~~~~~L~~d~~v~v~~~~HP~~~~~lt~~~~  206 (314)
T PRK09508        175 --EFTSVPLFKDELVLVASKNHPRIKGPILEEQL  206 (314)
T ss_pred             --CCEEEEEEECCEEEEECCCCCCCCCCCCHHHH
T ss_conf             --73489997246499982999767899999999


No 63 
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=86.82  E-value=2  Score=21.09  Aligned_cols=47  Identities=9%  Similarity=0.030  Sum_probs=28.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CHHHHHHHHHHHHH
Q ss_conf             924899999999999983142013767999803-42589999999999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS-STLFPYSKIIAENF   47 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS-st~~P~~~~~a~~y   47 (346)
                      ||+.++.+.+++++++.+|++......++..|. =|..-++..+-+.+
T Consensus         1 MKK~~la~~~~svl~LaaC~~~~~~~vat~kgg~IT~~e~y~~~k~~~   48 (287)
T PRK03095          1 MKKAMLALAATSVIALSACGTSSSDKIVTSKAGDITKDEFYEQMKTQA   48 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             907899999999999985168998758984698272999999999888


No 64 
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.11  E-value=0.9  Score=23.06  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CHHHH
Q ss_conf             924899999999999983142013767999803-42589
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS-STLFP   38 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS-st~~P   38 (346)
                      ||.++..++++++++++++.++.|+-.|.|.+. ....|
T Consensus         1 ~~~~~~~~~l~l~l~l~~~~~A~A~L~IeIt~g~~~~ip   39 (437)
T PRK05137          1 MRLLLSALALALALALLAAQPARALLRIDITKGNVEPLP   39 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf             910588999999999873121431399999467677335


No 65 
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=82.94  E-value=3.1  Score=20.06  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=59.9

Q ss_pred             CCHHHHHHHH----HHHHHHHHCCCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             9248999999----999999831420-13767999803425899999999999877980799981576205789885210
Q gi|254780707|r    1 MRFFFVVLMC----FVVLEVYCGTGT-FARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGI   75 (346)
Q Consensus         1 Mk~~~~~~~~----~~~l~~~~~~~~-~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~   75 (346)
                      |++.+..+++    ++++++++|++. ....+|+++=+...+--+...+..-.++.-|.++.+++=..--.==.++.+|.
T Consensus         1 m~~~~k~~~~~~~l~~~l~l~gCg~~~~~~~~ikVG~~~gp~~ei~e~~~~~~~ek~G~~veiv~FsDy~~pN~AL~~G~   80 (271)
T PRK11063          1 MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGD   80 (271)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCC
T ss_conf             96029999999999999975005898567981899846898799999988888860797689999368321558986798


Q ss_pred             CCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             13353012133202476787676248787246665215412554166654568888888764102555553236730232
Q gi|254780707|r   76 GDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKW  155 (346)
Q Consensus        76 ~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W  155 (346)
                          +|.-.   -.+..=++...+.....++  .++.     ++..+.                      .+|..++++.
T Consensus        81 ----iDaN~---fQH~~yL~~~nk~~g~~L~--~v~~-----~~~~P~----------------------glYS~K~ksl  124 (271)
T PRK11063         81 ----IDANA---FQHKPYLDQQIKDRGYKLV--AVGN-----TFVYPI----------------------AGYSKKIKSL  124 (271)
T ss_pred             ----CCHHH---HHCHHHHHHHHHHCCCCEE--EEEE-----EEEEEE----------------------EEEECCCCCH
T ss_conf             ----44234---5579999999997799579--9866-----778415----------------------8642365886


Q ss_pred             HHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             31001112245035448854235789
Q gi|254780707|r  156 SEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       156 ~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
                      .|+    |+... +..|+|.|.....
T Consensus       125 ~el----p~Ga~-IaIPND~sN~~RA  145 (271)
T PRK11063        125 DEL----QDGSQ-VAVPNDPTNLGRS  145 (271)
T ss_pred             HHC----CCCCE-EEECCCCCHHHHH
T ss_conf             475----69999-9804885609999


No 66 
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=82.44  E-value=3.2  Score=19.95  Aligned_cols=64  Identities=16%  Similarity=0.036  Sum_probs=43.0

Q ss_pred             CCEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHH
Q ss_conf             767999803--42589999999999987798079998157620578988521013353012133202476
Q gi|254780707|r   25 RNRIRIAGS--STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQN   92 (346)
Q Consensus        25 ~~~I~i~GS--st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~   92 (346)
                      ..++.+...  .--.|++.+..+.|-++++-.++..++..+...-...+..|.    +|+|...-+....
T Consensus        30 ~~~~~~~~~~~~~~~~~~va~~kG~f~~~Gl~~V~~~~~~~~~~~~~~l~~G~----~D~a~~~~~~~~~   95 (335)
T COG0715          30 KVTILLGWLPNPDHAPLYVAKEKGFFKKEGLDDVELVEFTGGAPVLEALAAGA----LDFAVYYTGDTPL   95 (335)
T ss_pred             CEEEEEEEECCHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCHHHHHHHHCCC----CCEEEECCCCHHH
T ss_conf             06999743337028999999978917774997589970798457999997699----8887423785599


No 67 
>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=81.65  E-value=1.8  Score=21.38  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC---CEEEEE
Q ss_conf             9248999999999999831420137---679998
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR---NRIRIA   31 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~---~~I~i~   31 (346)
                      ||++...+++++++.+++..++.|.   ++|++.
T Consensus         1 m~~~~~~~l~~~~~l~~~~~~a~A~~~~sTvS~G   34 (199)
T pfam06316         1 MRKLCAAILSAAICLAAAGTPASAAEHQSTLSAG   34 (199)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEC
T ss_conf             9017789999999999727731121478668622


No 68 
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=80.31  E-value=3.9  Score=19.52  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCHHHHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf             92489999999999998314201376799980--34258999999999998--779807999815762057898852101
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG--SSTLFPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGIG   76 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~G--Sst~~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~~   76 (346)
                      ||++.+++++++++++..++ +++. .++|+-  .+.-.|++....+.+++  +.-++++.+..+.+.......-++...
T Consensus         1 mk~k~~~~~~~~~~~~~~~~-a~a~-~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~dA~~D~~~Qi~qIe~~I   78 (330)
T PRK10355          1 MKIKNILLTLCAALLLTSVA-AHAK-EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI   78 (330)
T ss_pred             CCHHHHHHHHHHHHHHHCCH-HHHC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             96689999999999984461-1213-867999906888868999999999999975998999718999899999999999


Q ss_pred             CCCCCEE---ECCCCCCHHHHHHHHHCCC
Q ss_conf             3353012---1332024767876762487
Q gi|254780707|r   77 DDTIDIV---NSSRKITQNELDECKKHGV  102 (346)
Q Consensus        77 ~~~~dig---~ssr~l~~~E~~~~~~~~~  102 (346)
                      ...+|.=   ..|..--..-++++...++
T Consensus        79 ~qgvdaIiv~p~D~~al~~~v~~A~~aGI  107 (330)
T PRK10355         79 NRGVDVLVIIPYNGQVLSNVIKEAKQEGI  107 (330)
T ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             85999999969987888999999998799


No 69 
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=76.71  E-value=5  Score=18.90  Aligned_cols=82  Identities=11%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH---HHHCCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf             92489999999999998314201376799980342589999999999---987798079998157620578988521013
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF---SEYFPEFKTPFVESGGSSVGLKEFCRGIGD   77 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y---~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~   77 (346)
                      ||++..+ ++.+.++++.+..+.+.+||=+.=.+.-.||+..+.+..   .+++ |.++.+..+.++..-....++-...
T Consensus         3 ~~k~~~~-~~~~~~~~~~~a~a~a~~TIgvivp~i~npff~~v~~gie~~a~~~-Gy~l~v~~s~~d~~~q~~~i~~li~   80 (295)
T PRK10653          3 MKKLATL-VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTV   80 (295)
T ss_pred             HHHHHHH-HHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             0799999-9999876521217752997999948987979999999999999976-9989998399999999999999997


Q ss_pred             CCCCEEE
Q ss_conf             3530121
Q gi|254780707|r   78 DTIDIVN   84 (346)
Q Consensus        78 ~~~dig~   84 (346)
                      ..+|.-.
T Consensus        81 ~~vdgii   87 (295)
T PRK10653         81 RGTKILL   87 (295)
T ss_pred             CCCCEEE
T ss_conf             6998899


No 70 
>PRK09934 putative fimbrial protein; Provisional
Probab=70.64  E-value=6  Score=18.45  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=20.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCH
Q ss_conf             9248999999999999831420137--6799980342
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR--NRIRIAGSST   35 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~--~~I~i~GSst   35 (346)
                      |||+++.+++.+++...+. ++.+.  .+|+..|+=.
T Consensus         1 mkk~~l~~~~~l~~~~~~~-aa~~~g~g~i~F~G~I~   36 (171)
T PRK09934          1 MRRVFIAIFCGLLWSPLSQ-AASPLGEINIELRGNVV   36 (171)
T ss_pred             CHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEEE
T ss_conf             9268999999999863442-11358805899999998


No 71 
>PRK09408 ompX outer membrane protein X; Provisional
Probab=70.15  E-value=5.8  Score=18.56  Aligned_cols=32  Identities=19%  Similarity=0.095  Sum_probs=23.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             92489999999999998314201376799980
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG   32 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~G   32 (346)
                      ||+...+.+++.+|++.+..+.++..++++.=
T Consensus         1 mkk~~~~s~~~~~~~~~a~~a~A~~sTvS~GY   32 (171)
T PRK09408          1 MKKIACLSALAAVLAFTAGTAVAATSTVTGGY   32 (171)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             92247899999998856666642576698788


No 72 
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=67.23  E-value=8.5  Score=17.63  Aligned_cols=20  Identities=20%  Similarity=0.559  Sum_probs=16.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             96348999999999999607
Q gi|254780707|r  324 GLIPISNEERKSVRDSIAVG  343 (346)
Q Consensus       324 GyvPLp~~~~~~~~~~~~~~  343 (346)
                      +|+|..++.++.+|+.....
T Consensus       275 ~~~~~~~~~y~~i~~~~~~~  294 (299)
T COG3221         275 GFVEVRDDDYKPIRDAVKEL  294 (299)
T ss_pred             CEEECCHHHHHHHHHHHHHH
T ss_conf             62304666779999999986


No 73 
>PRK10959 outer membrane protein W; Provisional
Probab=65.39  E-value=6.2  Score=18.41  Aligned_cols=38  Identities=24%  Similarity=0.178  Sum_probs=19.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
Q ss_conf             92489999999999998314201376799980342589
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP   38 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P   38 (346)
                      |||+.+..+++.++....+.++.+-+-+.-.|...+.|
T Consensus         1 Mkk~~~a~~~~~a~~s~~A~A~~aGd~~vr~g~~~V~P   38 (212)
T PRK10959          1 MKKLTVAALAVATLLSGSAFAHEAGDFIVRAGAATVRP   38 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf             93789999999987516778832799899966899834


No 74 
>PRK10796 LPS-assembly lipoprotein RlpB; Provisional
Probab=65.09  E-value=9.4  Score=17.39  Aligned_cols=54  Identities=13%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC--------CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             924899999999999983142013--------76799980342589999999999987798079
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFA--------RNRIRIAGSSTLFPYSKIIAENFSEYFPEFKT   56 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a--------~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~   56 (346)
                      ||+++.+++.++++..+.|+-..-        -.++.+..+..-.|+...+-+++...  ++++
T Consensus         1 ~r~l~~l~l~lavll~agCGFhLRg~~~lP~~l~tL~l~S~Dpys~Ltr~vr~qLr~~--gV~l   62 (196)
T PRK10796          1 MRYLATLLLSLAVLVTAGCGWHLRGTTQVPSEMKTMILDSGDPNGPLSRAVRNQLRLN--GVEL   62 (196)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEE
T ss_conf             9569999999999997476715768999986444589980487867999999999877--9589


No 75 
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=64.06  E-value=4.9  Score=18.96  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             9248999999999999831420137679998034
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS   34 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs   34 (346)
                      ||+++.++++++.+.+..+++    |++...|-.
T Consensus         1 Mk~~~~~~~~l~~~~~~lagC----NTv~G~G~D   30 (42)
T pfam08085         1 MKKLIALLLALLLLALVLAGC----NTVAGAGKD   30 (42)
T ss_pred             CHHHHHHHHHHHHHHHHHHCC----HHHHHCCHH
T ss_conf             923699999999999998612----221112163


No 76 
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=63.15  E-value=8.8  Score=17.55  Aligned_cols=33  Identities=9%  Similarity=0.061  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHH-HHHHHCCCCCCCCEEEEEECC
Q ss_conf             9248999999999-999831420137679998034
Q gi|254780707|r    1 MRFFFVVLMCFVV-LEVYCGTGTFARNRIRIAGSS   34 (346)
Q Consensus         1 Mk~~~~~~~~~~~-l~~~~~~~~~a~~~I~i~GSs   34 (346)
                      ||++++.++++++ +++.+|++ .....++..|.+
T Consensus         5 MKK~~l~~~~~~~~l~LaaCss-~~~~Vat~kg~~   38 (298)
T PRK04405          5 MKKWALAAASAGLLLSLAGCSS-NNKTVATYKGGK   38 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCC
T ss_conf             8999999999999999987179-997699863987


No 77 
>PRK13486 bifunctional enterobactin receptor/adhesin protein; Provisional
Probab=62.60  E-value=10  Score=17.12  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH-------------------HHHHHHHHCCCCEEEEEEC
Q ss_conf             924899999999999983142013767999803425899999-------------------9999998779807999815
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKI-------------------IAENFSEYFPEFKTPFVES   61 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~-------------------~a~~y~~~~~~~~~~~~~~   61 (346)
                      ||...+..+.+..|++.+.....+.++|.+.++-+-.|+.+.                   +.|.. +.-|++.+  .+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vvVTatr~~~~l~d~p~sVsVIt~e~I~~~~~~~l~d~L-~~~PGv~v--~~~   77 (696)
T PRK13486          1 MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAASVSVISQEELQSSQYHDLAEAL-RSVEGVDV--ESG   77 (696)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHCCCCEEEECHHHHHHHCCCCHHHHH-HHCCCEEE--ECC
T ss_conf             961478999998753203443456884999016861677888986699899999762878899998-64899599--467


Q ss_pred             CCCHHHHHHHHHHC
Q ss_conf             76205789885210
Q gi|254780707|r   62 GGSSVGLKEFCRGI   75 (346)
Q Consensus        62 ~GSg~Gi~~~~~G~   75 (346)
                      .|.+.+..-.+.|.
T Consensus        78 ~g~~~~~~i~iRG~   91 (696)
T PRK13486         78 TGKTGGLEISIRGM   91 (696)
T ss_pred             CCCCCCCEEEEECC
T ss_conf             78678633999377


No 78 
>PRK04922 tolB translocation protein TolB; Provisional
Probab=60.42  E-value=11  Score=16.90  Aligned_cols=39  Identities=21%  Similarity=0.163  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEE-CCHHHHH
Q ss_conf             92489999999999998314-201376799980-3425899
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGT-GTFARNRIRIAG-SSTLFPY   39 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~-~~~a~~~I~i~G-Sst~~P~   39 (346)
                      ||++.+.+.++++++++... ++.|+-+|.|.| .....|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~a~a~L~IeIt~G~~~~~pI   41 (439)
T PRK04922          1 MKKPLRWLAALTALLLPLSALAQQQGLTIDIVGGSASATPI   41 (439)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEE
T ss_conf             96168999999999998778861683699993577770506


No 79 
>PRK01742 tolB translocation protein TolB; Provisional
Probab=58.43  E-value=11  Score=17.05  Aligned_cols=40  Identities=23%  Similarity=0.216  Sum_probs=24.4

Q ss_pred             CCHHHHHHHHHHHHHHH-HCCCCCCCCEEEEE-ECCHHHHHH
Q ss_conf             92489999999999998-31420137679998-034258999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVY-CGTGTFARNRIRIA-GSSTLFPYS   40 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~-~~~~~~a~~~I~i~-GSst~~P~~   40 (346)
                      ||.+..++.++++++++ ++..+.++-.|.|. |.....|++
T Consensus         1 m~m~~~~~~~~~~l~~~~~~~~a~a~L~I~It~G~~~~~pIA   42 (430)
T PRK01742          1 MKLLKRLVSVFAVLFAVISNAFAGDEVRIVIDEGVDGARPIA   42 (430)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE
T ss_conf             916999999999999998778505755999945767740459


No 80 
>PRK11087 hypothetical protein; Provisional
Probab=57.44  E-value=13  Score=16.69  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=20.6

Q ss_pred             CCHHHHHHHHHHHHHHH-HCCCCCCC-----CEEEEEECCHH
Q ss_conf             92489999999999998-31420137-----67999803425
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVY-CGTGTFAR-----NRIRIAGSSTL   36 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~-~~~~~~a~-----~~I~i~GSst~   36 (346)
                      ||...+.+..++.|+.+ .+.+..+.     -+|++.|+.++
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~p~~p~ItVtG~g~v   42 (238)
T PRK11087          1 MKLKVLALAALLGLSASLLAMAAQAAELPDFPHIVTSGTASV   42 (238)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEEEE
T ss_conf             930499999999987766324344347999987999989999


No 81 
>PRK03629 tolB translocation protein TolB; Provisional
Probab=56.19  E-value=9.8  Score=17.27  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHHH
Q ss_conf             9248999999999999831420137679998-034258999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPYS   40 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~~   40 (346)
                      ||+++.++++++.++...   +.|+-.|.|. |.....|+.
T Consensus         1 mk~~~~~~f~~lll~~~~---a~A~L~I~It~G~~~~~PIA   38 (430)
T PRK03629          1 MKQALRVAFGFLILWASV---LHAEVRIEITQGVDSARPIG   38 (430)
T ss_pred             CCHHHHHHHHHHHHHHHH---HCEEEEEEEECCCCCCCCEE
T ss_conf             901488899899987544---22379999934667732569


No 82 
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=55.92  E-value=4.2  Score=19.31  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
Q ss_conf             92489999999999998314201376799980342589
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP   38 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P   38 (346)
                      ||+.+.+++.++.+.+.+|..    |.|+=.+-.|+.|
T Consensus         1 Mkki~~~~i~~~~~~L~aCQa----NyiRDvqGGtVaP   34 (46)
T pfam02402         1 MKKILFIGILLLTVLLSACQA----NYIRDVQGGTVAP   34 (46)
T ss_pred             CCEEEEHHHHHHHHHHHHHHH----HHEEECCCCEECC
T ss_conf             924201399999999998555----0412256852778


No 83 
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696    Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=53.92  E-value=12  Score=16.83  Aligned_cols=69  Identities=20%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             HHHHHHH-HHHHHHHHHCCCCCCCCEEEEEECCHHHH----------HHHHHHHHHHHHCCCCE----EEEEECCCCHHH
Q ss_conf             4899999-99999998314201376799980342589----------99999999998779807----999815762057
Q gi|254780707|r    3 FFFVVLM-CFVVLEVYCGTGTFARNRIRIAGSSTLFP----------YSKIIAENFSEYFPEFK----TPFVESGGSSVG   67 (346)
Q Consensus         3 ~~~~~~~-~~~~l~~~~~~~~~a~~~I~i~GSst~~P----------~~~~~a~~y~~~~~~~~----~~~~~~~GSg~G   67 (346)
                      |...+|+ ++++|.+.+..+.+|...|+|.|..++.|          .-.++.+.|=+++.-|+    .++|..+.-+.=
T Consensus        20 Fs~l~I~P~~lLLv~~~lFs~fAkkEivi~~~g~~~p~~~~~~iQst~n~~I~~N~L~Enk~VKKG~~Lv~y~~~~~~~~   99 (476)
T TIGR01000        20 FSTLVIVPIFLLLVFLVLFSLFAKKEIVIRSTGSIEPAKVIAKIQSTSNNAIKENYLKENKFVKKGDLLVVYTNTNEENQ   99 (476)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCCEEECCCEEEEEECCHHHHH
T ss_conf             12689999999999999972201078898411266143201212288421456513320978833878999717435778


Q ss_pred             HHHH
Q ss_conf             8988
Q gi|254780707|r   68 LKEF   71 (346)
Q Consensus        68 i~~~   71 (346)
                      -+.+
T Consensus       100 ~~~~  103 (476)
T TIGR01000       100 KQEL  103 (476)
T ss_pred             HHHH
T ss_conf             9999


No 84 
>PRK11627 hypothetical protein; Provisional
Probab=52.82  E-value=15  Score=16.30  Aligned_cols=27  Identities=7%  Similarity=0.249  Sum_probs=15.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             9248999999999999831420137679998
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA   31 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~   31 (346)
                      ||+++..++++++|+.|+.    ..++|.+.
T Consensus         2 mkk~~~~l~a~~lL~gCas----~p~~l~l~   28 (192)
T PRK11627          2 LKKILFPLVALFMLAGCAT----PPTTLEVS   28 (192)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CCCEEEEC
T ss_conf             2879999999999986069----97637867


No 85 
>pfam07996 T4SS Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.
Probab=51.41  E-value=16  Score=16.04  Aligned_cols=32  Identities=13%  Similarity=0.148  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             9248999999999999831420137679998034
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS   34 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs   34 (346)
                      ||+  .++.+++++.++++.++++.+.-.+++++
T Consensus         1 Mkk--~~~~~~~~~~l~~~~~a~a~GIPV~D~a~   32 (217)
T pfam07996         1 MKK--KLIILALALALLAASPAAAAGIPVVDAAS   32 (217)
T ss_pred             CCH--HHHHHHHHHHHHCCCHHHCCCCCEECCHH
T ss_conf             933--79999999998477777608998103413


No 86 
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=51.24  E-value=16  Score=16.02  Aligned_cols=89  Identities=13%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
                      ..+.+++|+-+.++.+ ++..+-..|.+.||++.+. +...-+..-...+.+|.    +|++.......+..        
T Consensus        89 ~~~G~lri~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dlai~~~~~~p~~--------  155 (300)
T PRK11074         89 GWRGQLSIALDNIVRPDRTRQLIADFYRHFDDVELI-IRQEVFNGVWDALADGR----ADIAIGATRAIPVG--------  155 (300)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCCC--------
T ss_conf             984259998653357899999999999988695799-99766367999997699----77899437677888--------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCC
Q ss_conf             787246665215412554166654
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVS  125 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~  125 (346)
                       ..+...+++....++++.++.|.
T Consensus       156 -~~~~~~~l~~~~~~~v~~~~hpL  178 (300)
T PRK11074        156 -GRFAFRDMGMLSWAFVVSSDHPL  178 (300)
T ss_pred             -CCEEEEECCCCEEEEEECCCCHH
T ss_conf             -86578881442056674589755


No 87 
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=50.57  E-value=17  Score=15.96  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEE-CCCCH-HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC---CCCE-EEEEECC
Q ss_conf             999999999877980799981-57620-5789885210133530121332024767876762487---8724-6665215
Q gi|254780707|r   40 SKIIAENFSEYFPEFKTPFVE-SGGSS-VGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV---SDIQ-EVTIGHD  113 (346)
Q Consensus        40 ~~~~a~~y~~~~~~~~~~~~~-~~GSg-~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~---~~~~-~~~v~~d  113 (346)
                      .+.+++..++..+. .+++.. ++|+| -|...+.+-.-+++ .+...+.++.-...- ......   .++. -..+..+
T Consensus         2 AR~~a~~l~~~lG~-~vvV~N~pGagG~ig~~~v~~a~~DGy-Tl~~~~~~~~~~~~~-~~~~~~~~~~df~pia~~~~~   78 (274)
T pfam03401         2 ARALAQGMSKQLGQ-PVIVENKPGAGGIIGADAVAKAAPDGY-TILLGSTGLAVAPHL-YPNLPYDPIKDFTPVSLLATS   78 (274)
T ss_pred             HHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHCCCCCC-EEEEECCHHHHHHHH-HCCCCCCCHHHHHHHHHHHCC
T ss_conf             78999999998699-879996698306999999980899998-899946789876888-434788708876758865016


Q ss_pred             CCEEEECCCCCCCCCCHHHHHH
Q ss_conf             4125541666545688888887
Q gi|254780707|r  114 GILLVSDRDMVSVSLTVEDLYK  135 (346)
Q Consensus       114 ~i~i~~n~~~~~~~lt~~~l~~  135 (346)
                      ..+++++++.+..  |.+++..
T Consensus        79 ~~~l~v~~dsp~~--t~~dli~   98 (274)
T pfam03401        79 PMVLVVPADSPFK--TLQELVA   98 (274)
T ss_pred             CEEEEECCCCCCC--CHHHHHH
T ss_conf             3588977999756--8999999


No 88 
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=50.51  E-value=17  Score=15.96  Aligned_cols=86  Identities=13%  Similarity=0.065  Sum_probs=43.7

Q ss_pred             CEEEEEECCHHHHHH-------------HHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf             679998034258999-------------9999999987--7980799981576205789885210133530121332024
Q gi|254780707|r   26 NRIRIAGSSTLFPYS-------------KIIAENFSEY--FPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKIT   90 (346)
Q Consensus        26 ~~I~i~GSst~~P~~-------------~~~a~~y~~~--~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~   90 (346)
                      .+|+++=+...-|+.             --++.+..+.  ..++++. ..+.....=+..+.+|.    +|+.+++-.++
T Consensus        38 G~L~vg~~~~~pPf~~~d~~~g~~~GfDvDla~~iAk~llg~~~~v~-~v~~~~~~~~p~L~~gk----vD~i~~~~tiT  112 (259)
T PRK11917         38 GQLIVGVKNDVPHYALLDQATGEIKGFEIDVAKLLAKSILGDDKKIK-LVAVNAKTRGPLLDNGS----VDAVIATFTIT  112 (259)
T ss_pred             CEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCCEEE-EEEECHHHHHHHHHCCC----EEEEEECCCCC
T ss_conf             98999987897886205679996788879999999999659985699-99706787768987798----55998664767


Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCEEEECCCC
Q ss_conf             767876762487872466652154125541666
Q gi|254780707|r   91 QNELDECKKHGVSDIQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus        91 ~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~  123 (346)
                      ++=.+..      .+ ..|.......+++.+++
T Consensus       113 ~eR~k~v------dF-S~PY~~~~~~ilv~k~~  138 (259)
T PRK11917        113 PERKRIY------NF-SEPYYQDAIGLLVLKEK  138 (259)
T ss_pred             CCHHCCE------EE-CCCEEEEEEEEEEECCC
T ss_conf             6543057------62-24769965599998999


No 89 
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=49.49  E-value=12  Score=16.74  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=17.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             92489999999999998314201
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTF   23 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~   23 (346)
                      |||+++.++++.++++..|++-.
T Consensus         1 MKk~~l~~~i~SAL~LaGCg~~s   23 (269)
T pfam12262         1 MKKKFLALLLASALLLAGCGDDT   23 (269)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             92479999999986411157996


No 90 
>PRK00178 tolB translocation protein TolB; Provisional
Probab=48.85  E-value=18  Score=15.81  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHH
Q ss_conf             9248999999999999831420137679998034-25899
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS-TLFPY   39 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs-t~~P~   39 (346)
                      |+++..++++++++  +++..+.|+-.|.|.+.. ...|+
T Consensus         1 m~~l~~~~~l~~~l--~~~~~a~A~l~I~It~g~~~~ipI   38 (433)
T PRK00178          1 MIKLKRIALLVLCL--LAGGAAAAELNIEITSGSDRAIPI   38 (433)
T ss_pred             CCCHHHHHHHHHHH--HHHHHHCEEEEEEEECCCCCEEEE
T ss_conf             90179999999999--876762203999993477760406


No 91 
>PRK12450 foldase protein PrsA; Reviewed
Probab=48.32  E-value=18  Score=15.76  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=14.1

Q ss_pred             CCHHHHHHHH-HHHHHHHHCCCCCC-CCEEEEEEC
Q ss_conf             9248999999-99999983142013-767999803
Q gi|254780707|r    1 MRFFFVVLMC-FVVLEVYCGTGTFA-RNRIRIAGS   33 (346)
Q Consensus         1 Mk~~~~~~~~-~~~l~~~~~~~~~a-~~~I~i~GS   33 (346)
                      ||++++.++. ++++++.+|++... ...++..|.
T Consensus         4 mKK~~~~~~~~~svl~LaAC~s~~~~~~v~t~kgg   38 (309)
T PRK12450          4 MNKLITGVVTLATVVTLSACQSSHNNTKLVSMKGD   38 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             99999999999999999860589998368983599


No 92 
>PRK11622 putative ABC transporter solute-binding protein; Provisional
Probab=47.66  E-value=19  Score=15.70  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC----------CCC-CEEEE---EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf             9248999999999999831420----------137-67999---803425899999999999877980799981576205
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGT----------FAR-NRIRI---AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSV   66 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~----------~a~-~~I~i---~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~   66 (346)
                      ||++..++.+++++++..+.+.          .|+ +++.-   .||..+.-+++-++++.++++ ++.+.-|--.....
T Consensus         2 ~r~~~~~~~~l~~~~~~~~~~~~~~~W~~i~~~A~GqtV~f~aWGGs~~iN~yi~w~~~~l~~~y-~ItL~~Vk~~Dt~~   80 (401)
T PRK11622          2 MRHLLALLGLLALLSLAAAASDAANTWQQILEEAKGQTVYFNAWGGSPAINRYLDWVAKELKERY-GITLKHVKLADIAE   80 (401)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCCHHH
T ss_conf             58899999999987501457644489999999716988999976795777599999999999985-96689952545899


Q ss_pred             HHHHHHHH
Q ss_conf             78988521
Q gi|254780707|r   67 GLKEFCRG   74 (346)
Q Consensus        67 Gi~~~~~G   74 (346)
                      -+++++.-
T Consensus        81 av~rvlaE   88 (401)
T PRK11622         81 AVNRLLAE   88 (401)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 93 
>COG5510 Predicted small secreted protein [Function unknown]
Probab=47.37  E-value=12  Score=16.82  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=16.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             924899999999999983142013767999803
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS   33 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS   33 (346)
                      ||+..+++.++++.++....+    |+.+..|-
T Consensus         2 mk~t~l~i~~vll~s~llaaC----NT~rG~G~   30 (44)
T COG5510           2 MKKTILLIALVLLASTLLAAC----NTMRGAGK   30 (44)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH----HHHHCCCH
T ss_conf             048999999999999999886----63002236


No 94 
>PRK10259 hypothetical protein; Provisional
Probab=46.51  E-value=20  Score=15.60  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCC-CC---C--------CCCEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             92489999999999998314-20---1--------3767999803425899999999999877
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGT-GT---F--------ARNRIRIAGSSTLFPYSKIIAENFSEYF   51 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~-~~---~--------a~~~I~i~GSst~~P~~~~~a~~y~~~~   51 (346)
                      ||.+..++.++++..+.+.. ++   .        ...+|+..|++++--+-.++++.=.+.-
T Consensus         1 MK~ik~~~aa~aLs~~SFgsfAA~~v~~~qa~~l~~iG~VSa~gA~tL~~Le~~LA~KA~~aG   63 (86)
T PRK10259          1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAG   63 (86)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             914899999999998226765414146322125665279982488886899999999999748


No 95 
>PRK13484 putative iron-regulated outer membrane virulence protein; Provisional
Probab=46.43  E-value=18  Score=15.78  Aligned_cols=40  Identities=10%  Similarity=0.120  Sum_probs=26.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC-----CEEEEEECCHHHHHH
Q ss_conf             9248999999999999831420137-----679998034258999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR-----NRIRIAGSSTLFPYS   40 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~-----~~I~i~GSst~~P~~   40 (346)
                      ||..+.+..++++++.++..++.|+     +.|.+..+-+..|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~vvVTAtr~~~~l~   45 (682)
T PRK13484          1 MKNKYIIAPGIAVMCSAVISSGYASSDKKEDTLVVTASGFTQQLR   45 (682)
T ss_pred             CCCEEHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             972124899999999887553545222688749992158736877


No 96 
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=45.30  E-value=21  Score=15.49  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=18.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCHHHCC
Q ss_conf             9970788566889999999974987405
Q gi|254780707|r  288 FYVKRQHFNSVLGLREYVSFSVSDEMMA  315 (346)
Q Consensus       288 ~yv~~~~~~~~~~~~~Fl~~~ls~~~~~  315 (346)
                      +.++.. ....+.+++++.-+-|++-+.
T Consensus       228 ivvr~~-d~d~~~ik~lv~a~qs~evk~  254 (268)
T COG1464         228 IVVREE-DKDDPAVKKLVEAYQSDEVKA  254 (268)
T ss_pred             EEECCC-CCCCHHHHHHHHHHCCHHHHH
T ss_conf             997155-668889999999974999999


No 97 
>PRK10641 btuB vitamin B12/cobalamin outer membrane transporter; Provisional
Probab=43.90  E-value=22  Score=15.37  Aligned_cols=38  Identities=8%  Similarity=0.096  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHH-HHHHHCCCCCCCCEEEEEECCHHHHHH
Q ss_conf             9248999999999-999831420137679998034258999
Q gi|254780707|r    1 MRFFFVVLMCFVV-LEVYCGTGTFARNRIRIAGSSTLFPYS   40 (346)
Q Consensus         1 Mk~~~~~~~~~~~-l~~~~~~~~~a~~~I~i~GSst~~P~~   40 (346)
                      |||..++.++.+. +.+.+..  .+.+.|.+.++-+..|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~--~~~devvVTAtr~~~~~~   40 (615)
T PRK10641          2 IKKASLLTALSVTAFSAWAQD--TSPDTLVVTANRFQQPRS   40 (615)
T ss_pred             CHHHHHHHHHHHHCCHHHHCC--CCCCEEEEECCCCCCCHH
T ss_conf             448999999987513354335--899719990348515776


No 98 
>PRK13697 cytochrome c6; Provisional
Probab=42.94  E-value=19  Score=15.63  Aligned_cols=26  Identities=15%  Similarity=0.292  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHH-HHHHCCCCCCCC
Q ss_conf             92489999999999-998314201376
Q gi|254780707|r    1 MRFFFVVLMCFVVL-EVYCGTGTFARN   26 (346)
Q Consensus         1 Mk~~~~~~~~~~~l-~~~~~~~~~a~~   26 (346)
                      ||+++.++++.+++ .+...+++.+.+
T Consensus         1 Mk~l~~~~l~~~~~~~~~~~~pA~Aad   27 (111)
T PRK13697          1 MKKILKLVLLTLLLLTFAFTSPAFAAD   27 (111)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             978999999999999998035544416


No 99 
>PRK10449 heat-inducible protein; Provisional
Probab=42.00  E-value=21  Score=15.45  Aligned_cols=21  Identities=10%  Similarity=0.219  Sum_probs=12.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             924899999999999983142
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG   21 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~   21 (346)
                      ||+++.++++.++++.+.+++
T Consensus         1 MKk~l~l~~~~llLagC~s~~   21 (140)
T PRK10449          1 MKKVVALVALSLLMAGCVSSG   21 (140)
T ss_pred             CCHHHHHHHHHHHHHHCCCCC
T ss_conf             903499999999997523899


No 100
>PRK10086 DNA-binding transcriptional regulator DsdC; Provisional
Probab=41.90  E-value=23  Score=15.19  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ..+.|+|+-+.++.. +......+|.+.||++.+. +..+.+   ...+..+.    +|++..-.+..+.          
T Consensus       100 ~~G~LrI~~~~~~~~~~L~p~L~~F~~~~P~i~l~-l~~~~~---~~dl~~~~----~Dlai~~g~~~~~----------  161 (311)
T PRK10086        100 LSGTLTVYSRPSIAQCWLVPRLADFTRRYPSISLT-ILTGNE---NINFQRAG----IDLAIYFDDAPSA----------  161 (311)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EEECCC---CCCHHCCC----CEEEEEECCCCCC----------
T ss_conf             67851036772799875169999999618976999-996477---46410267----5058994788999----------


Q ss_pred             CCCEEEEEECCCCEEEECC
Q ss_conf             8724666521541255416
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDR  121 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~  121 (346)
                       .+...++..+.++++..+
T Consensus       162 -~l~~~~L~~~~~~~vasP  179 (311)
T PRK10086        162 -QLTHHFLMDESILPVCSP  179 (311)
T ss_pred             -CCEEEECCCCEEEEEECH
T ss_conf             -848999746629999988


No 101
>KOG1680 consensus
Probab=40.63  E-value=12  Score=16.83  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC
Q ss_conf             999999999987798079998157620578988521013353012133
Q gi|254780707|r   39 YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS   86 (346)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss   86 (346)
                      +|..+++.|..-..|..+.++--.|+|   +.||+|     .|+...+
T Consensus        65 ~m~eL~~A~~~~e~D~s~~viVltG~g---ksFcsG-----~Dl~e~~  104 (290)
T KOG1680          65 TMLELAEAFKDFESDDSVGVIVLTGSG---KSFCSG-----ADLKEMK  104 (290)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCC-----CCHHHHH
T ss_conf             999999999974046765479997688---752364-----3789875


No 102
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=40.37  E-value=20  Score=15.54  Aligned_cols=18  Identities=17%  Similarity=0.220  Sum_probs=11.4

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             924899999999999983
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYC   18 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~   18 (346)
                      ||+++++++++++++.|.
T Consensus         1 Mkk~~~~~~~~~~~~SCg   18 (449)
T TIGR03525         1 MKKYLVFAALVVLVYSCG   18 (449)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             912489999999872105


No 103
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=40.32  E-value=25  Score=15.04  Aligned_cols=92  Identities=12%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC-----CCCCEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             9248999999999999831420-----13767999803--4258999999999998779807999815762057898852
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGT-----FARNRIRIAGS--STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCR   73 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~-----~a~~~I~i~GS--st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~   73 (346)
                      |+++..++++++++.++...+.     .+-.+|+++..  ++....+....... +.. +..+ .+..+.+....+.+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~tV~~a~~~W~s~~~~t~v~~~iL-k~~-Gy~v-~~~~~~~~~~~~sla~   77 (302)
T COG2113           1 MKKLLALLAAVAAAALLAAAAAAAAAAEAGKTVRIADVGWTSGTATTNVAKKIL-KGL-GYTV-ELVTLDTAVMYQSLAK   77 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHC-CCCC-EEEECCHHHHHHHHHC
T ss_conf             923899999999999986220011134558825884369617899999999999-967-9962-4665559999999973


Q ss_pred             HCCCCCCCEEECCC-CCCHHHHHHHHH
Q ss_conf             10133530121332-024767876762
Q gi|254780707|r   74 GIGDDTIDIVNSSR-KITQNELDECKK   99 (346)
Q Consensus        74 G~~~~~~dig~ssr-~l~~~E~~~~~~   99 (346)
                      |.    +|+....= |..+.-.....+
T Consensus        78 gd----~D~~~~~W~p~~~~~~~~~~~  100 (302)
T COG2113          78 GD----LDVFPEAWLPTTPDDYKKAVK  100 (302)
T ss_pred             CC----CCCCCCEECCCCHHHHHHHHC
T ss_conf             79----753201026887588998742


No 104
>pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine.
Probab=40.26  E-value=25  Score=15.04  Aligned_cols=47  Identities=13%  Similarity=0.033  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             8999999999998779807999815762057898852101335301213320
Q gi|254780707|r   37 FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRK   88 (346)
Q Consensus        37 ~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~   88 (346)
                      .|++-+..+.|=+++ ++++..+...+++..++++.+|.    +||+.++-.
T Consensus         5 ap~~vA~~~G~f~~~-GL~Ve~~~~~~~~~~~~al~sG~----~D~a~~~~~   51 (216)
T pfam09084         5 AGLYVAQEKGYFKEE-GLDVEIVEPADPSDAVQLVAAGK----ADFGVSYQP   51 (216)
T ss_pred             HHHHHHHHCCCHHHC-CCCEEEEECCCCHHHHHHHHCCC----CCEEECCCH
T ss_conf             899999987946884-98089996688278999997698----677853719


No 105
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=39.06  E-value=23  Score=15.19  Aligned_cols=21  Identities=14%  Similarity=0.086  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             924899999999999983142
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG   21 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~   21 (346)
                      |||+++.++.+.+|++..|++
T Consensus         1 MKk~~l~~~iasal~LagCGg   21 (792)
T TIGR03502         1 MKKLLLSLAIASALGLAGCGD   21 (792)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
T ss_conf             933789999999875004578


No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=38.62  E-value=23  Score=15.20  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHH
Q ss_conf             9248999999999999831420137679998-03425899
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPY   39 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~   39 (346)
                      ||++++   .+++++++++..+.|+-.|.|. |.....|+
T Consensus         2 ~k~~~~---~l~lll~~~s~~A~A~L~IeIt~G~~~~~PI   38 (450)
T PRK04792          2 LKRLIL---GLFVLLLSFSQVANAALELVITDGIDSARPI   38 (450)
T ss_pred             CHHHHH---HHHHHHHHHHHHHEEEEEEEEECCCCCCCCE
T ss_conf             389999---9999999865752024999995477774254


No 107
>PRK13528 outer membrane receptor FepA; Provisional
Probab=38.58  E-value=26  Score=14.89  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEEEC
Q ss_conf             9248999999999999831420137-------67999803
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR-------NRIRIAGS   33 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~-------~~I~i~GS   33 (346)
                      |++...+.++.++|+++++..++++       ++|.++++
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~e~vVvt~~   42 (727)
T PRK13528          3 MRANKILWLLTVVLAGLNSQLSAAESSDDDNGETVVVEGT   42 (727)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             3046699999999998750555653346778868998787


No 108
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=38.55  E-value=26  Score=14.88  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=15.0

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             7980799981576205789885210
Q gi|254780707|r   51 FPEFKTPFVESGGSSVGLKEFCRGI   75 (346)
Q Consensus        51 ~~~~~~~~~~~~GSg~Gi~~~~~G~   75 (346)
                      ||+ .+++|.-.|||+|.++.++|.
T Consensus        39 ~~d-eVPvIAv~gSGGG~RAmva~~   62 (505)
T cd07200          39 SLR-EVPVIALLGSGGGFRAMVGMS   62 (505)
T ss_pred             CCC-CCCEEEEECCCCHHHHHHHHH
T ss_conf             866-699899971684299998767


No 109
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.28  E-value=25  Score=15.01  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             92489999999999998314201376799980342589999999999--9877980799981576205789885210
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF--SEYFPEFKTPFVESGGSSVGLKEFCRGI   75 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y--~~~~~~~~~~~~~~~GSg~Gi~~~~~G~   75 (346)
                      ||+++...+++.+++++.+..+++...+.+.|-.+----.....+.|  .-.+|...+    ..+-+.+++..+.|.
T Consensus         1 mr~~~~~~~~l~~l~~al~l~A~ae~~v~ld~P~~GWr~s~g~~~~~~q~v~YPa~sV----~~~~~Q~~~a~I~G~   73 (268)
T COG4676           1 MRTWMMRAGFLAALLVALSLVAWAEPEVELDAPLSGWRPSGGEDASYRQSVNYPASSV----NRADDQNIRALIRGR   73 (268)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHH
T ss_conf             9168777779999987446344138861025755565557776664342134788875----431340057887556


No 110
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=38.26  E-value=27  Score=14.86  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=14.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             924899999999999983142
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG   21 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~   21 (346)
                      ||+++.++++++++...++.+
T Consensus         1 mkk~~~~~~~~~~~~~~~~~~   21 (643)
T pfam10566         1 MKKLTIILLAFLLLIGNLSLA   21 (643)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
T ss_conf             950257899999999765675


No 111
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=37.94  E-value=25  Score=14.98  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=15.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             924899999999999983142
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG   21 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~   21 (346)
                      ||+++++++.+++.+.+++..
T Consensus         1 MkK~ll~~~llls~~s~aa~~   21 (126)
T pfam09403         1 MKKILLCSMLILSSLSYAAEA   21 (126)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             916999999999999987457


No 112
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=37.75  E-value=27  Score=14.85  Aligned_cols=29  Identities=31%  Similarity=0.521  Sum_probs=15.5

Q ss_pred             HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC
Q ss_conf             999999974987405220277----55963489
Q gi|254780707|r  301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS  329 (346)
Q Consensus       301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp  329 (346)
                      +++-+.|++|++-...|.++.    +-|||||.
T Consensus         4 i~~QvEfYFSd~NL~~D~fL~~~m~~~g~Vpl~   36 (75)
T cd07323           4 IKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLS   36 (75)
T ss_pred             HHHHHHHHCCHHHHHCCHHHHHHCCCCCCEEHH
T ss_conf             999999983686551489999862789979749


No 113
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=37.51  E-value=27  Score=14.79  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=15.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9248999999999999831420
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGT   22 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~   22 (346)
                      ||+++..++++++|+.+|+.-.
T Consensus         1 MkK~i~~il~~~llL~GCs~mn   22 (304)
T pfam07901         1 MRKLIKLILIATLLLSGCSTTN   22 (304)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC
T ss_conf             9018999999999971334455


No 114
>pfam06551 DUF1120 Protein of unknown function (DUF1120). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=35.62  E-value=30  Score=14.62  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCC--EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             92489999999999998314201376--7999803425899999999999877980799981576205789885210133
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARN--RIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD   78 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~--~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~   78 (346)
                      ||++++...+++.+.+++.+++++..  .+++.|.=+                |..=+++.    |++|+          
T Consensus         1 mkK~l~~~~i~a~l~~~~ssa~aa~~ta~LkV~G~i~----------------p~aCtp~l----s~GG~----------   50 (145)
T pfam06551         1 MKKNLAATAIAAGLAVLATSAQAADSTAVLKVTGTIT----------------PGACTPTL----SGGGT----------   50 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEE----------------CCCEEEEE----CCCCE----------
T ss_conf             9237899999999998603142257744699999986----------------67317785----79975----------


Q ss_pred             CCCEEECC-CCCCHHHHHH
Q ss_conf             53012133-2024767876
Q gi|254780707|r   79 TIDIVNSS-RKITQNELDE   96 (346)
Q Consensus        79 ~~dig~ss-r~l~~~E~~~   96 (346)
                       +|||-.+ +.|++.|..+
T Consensus        51 -vDfG~I~~~~Ls~t~~t~   68 (145)
T pfam06551        51 -VDYGTISASALSPTDYTQ   68 (145)
T ss_pred             -EEECEECHHHCCCCCCCC
T ss_conf             -864301141279876422


No 115
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=35.14  E-value=25  Score=15.05  Aligned_cols=51  Identities=14%  Similarity=0.227  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCH--HHHHHHHHHHHHHHHCCCCE
Q ss_conf             92489999999999998314201376799980342--58999999999998779807
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSST--LFPYSKIIAENFSEYFPEFK   55 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst--~~P~~~~~a~~y~~~~~~~~   55 (346)
                      ||+++.+.+++++|+.|+.+.... +-+.   +++  -+-+.+-..+.....+|-.+
T Consensus         1 MrK~~~~all~laL~gCAtt~~YG-NFv~---~~~~~~q~lA~Dav~QL~~lYPPA~   53 (156)
T PRK13883          1 MRKILSLALLALALGGCATTSQYG-NFVQ---ASAADQQKLATDAVQQLAALYPPAQ   53 (156)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCC-CCCC---CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             926899999999970331357887-7358---7403548889999999998568754


No 116
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=34.95  E-value=30  Score=14.55  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9248999999999999831
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCG   19 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~   19 (346)
                      ||+.+..++++++|+.+++
T Consensus         1 mk~~~~s~~ala~l~sLA~   19 (58)
T COG5567           1 MKNVFKSLLALATLFSLAG   19 (58)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9048999999999999985


No 117
>TIGR01779 TonB-B12 TonB-dependent vitamin B12 receptor; InterPro: IPR010101   The outer membrane is an essential component of Gram-negative bacteria, providing them with increased resistance to antibiotics, digestive enzymes, detergents and immune surveillance . The outer membrane is permeable to small hydrophilic molecules because of the presence of aqueous diffusion channels (e.g. porins). Small molecules present at high concentration diffuse down their concentration gradients into the periplasmic space. Porins are inadequate for the efficient acquisition of iron siderophores, cobalamins (Cbl), and other molecules that are present at very low concentrations and that are too bulky to pass through the lumen of the porin. Another class of outer membrane proteins binds these substrates with high specificity and carries out active transport across the outer membrane. This active transport process requires an energy source and a second protein, TonB. Outer membrane active-transport proteins interact with the transperiplasmic protein TonB through a conserved sequence, the "Ton-box". Interaction with TonB couples the energy of the proton motive force of the inner membrane to drive an outer membrane transport cycle .    To date, crystal structures of four TonB-dependent transporters have been solved. Three of these are iron-siderophore transporters: ferrichrome transporter FhuA , ; ferric enterobactin transporter FepA ; and ferric dicitrate transporter FecA . The fourth structure is the cobalamin transporter BtuB . All of these structures are composed of two domains, a conserved N-terminal globular domain (hatch) and a 22-stranded beta-barrel (barrel). The hatch domain resides within the barrel and occludes the large pore of the large barrel domain. The hatch domains are composed of a central core of four beta-strands connected by loops. The conserved Ton-box is located near the periplasmic opening of the barrel and precedes the conserved hatch core. The barrels have large extracellular loops and short periplasmic turns connecting the beta-strands. TonB-dependent transporters bind their cognate substrates using residues from hatch loops, from the interior surfaces of beta-strands in the barrel wall, and from extracellular loops of the barrel .    This entry represents the TonB-dependent outer membrane receptor found in gamma-proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). ; GO: 0004872 receptor activity, 0015889 cobalamin transport, 0016020 membrane.
Probab=34.13  E-value=24  Score=15.14  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHH-HH--HHHHHCCCCCC-----CCEEEEE-------ECCHHHHH-------HHHH----HHHHHHHCCCC
Q ss_conf             92489999999-99--99983142013-----7679998-------03425899-------9999----99999877980
Q gi|254780707|r    1 MRFFFVVLMCF-VV--LEVYCGTGTFA-----RNRIRIA-------GSSTLFPY-------SKII----AENFSEYFPEF   54 (346)
Q Consensus         1 Mk~~~~~~~~~-~~--l~~~~~~~~~a-----~~~I~i~-------GSst~~P~-------~~~~----a~~y~~~~~~~   54 (346)
                      |++.++..... ++  |++|....+..     .+++.++       =|.+++|+       ++.|    ..+.-+.-|+|
T Consensus         1 m~k~~L~~a~a~La~~lt~~~a~~~~~~~p~~l~~~VVTA~R~~Q~~s~~LA~V~ii~R~dIEr~Q~~sl~dlLR~~~GV   80 (644)
T TIGR01779         1 MKKSALAPALASLAVALTLCSALAADEAEPVDLDTVVVTANRFAQTASQTLAPVTIITRQDIERTQAKSLPDLLRRLPGV   80 (644)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             93035678899999999999998743306766005648762133763354554157634267787631266774137770


Q ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             79998157620578988521013353
Q gi|254780707|r   55 KTPFVESGGSSVGLKEFCRGIGDDTI   80 (346)
Q Consensus        55 ~~~~~~~~GSg~Gi~~~~~G~~~~~~   80 (346)
                      .+  -+.+|.|.--..|+.|+..+||
T Consensus        81 ~l--a~nGG~G~~~SLF~RGT~SdhV  104 (644)
T TIGR01779        81 SL--AQNGGAGKNTSLFLRGTESDHV  104 (644)
T ss_pred             EE--ECCCCCCCCEEEEEECCCCCEE
T ss_conf             24--3378985520777842466616


No 118
>pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=33.95  E-value=31  Score=14.46  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9248999999999999831420
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGT   22 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~   22 (346)
                      |||++-++++++.+.+....++
T Consensus         1 Mkkl~gi~~ll~~l~L~vGa~a   22 (183)
T pfam06510         1 MKKLIGILLLLAGLGLVVGAGA   22 (183)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9148999999999995400565


No 119
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=33.94  E-value=31  Score=14.46  Aligned_cols=23  Identities=9%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             CCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             11122450354488542357899
Q gi|254780707|r  160 PDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       160 ~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                      ...|+..|.+.+..|..|+.++=
T Consensus       139 ~~yp~~~V~I~GHTD~~G~~~yN  161 (219)
T PRK10510        139 KEYPKTAVNVVGYTDSTGSHDLN  161 (219)
T ss_pred             HHCCCCEEEEEEEECCCCCHHHH
T ss_conf             98899279999876896719999


No 120
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=33.22  E-value=19  Score=15.68  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=11.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             798079998157620578988521
Q gi|254780707|r   51 FPEFKTPFVESGGSSVGLKEFCRG   74 (346)
Q Consensus        51 ~~~~~~~~~~~~GSg~Gi~~~~~G   74 (346)
                      ||+ +|++|.-.|||+|.++.+++
T Consensus        48 ~~d-dVPvIAi~gSGGG~RAmv~~   70 (541)
T cd07201          48 QED-EVPVVAVMTTGGGTRALTSM   70 (541)
T ss_pred             CCC-CCCEEEEECCCCCHHHHHHH
T ss_conf             976-58878996478559999987


No 121
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.95  E-value=33  Score=14.37  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             9248999999999999831420137679998034258999999999998779807--99981576205789885210133
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFK--TPFVESGGSSVGLKEFCRGIGDD   78 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~--~~~~~~~GSg~Gi~~~~~G~~~~   78 (346)
                      ||+++.+++++.+.+.+|.++...+.+|.             +.+++....|+-+  ....++-|-.     +|+-    
T Consensus         2 mRvl~i~Lliis~fl~a~~s~~e~~s~~~-------------~~~d~ksi~~~~Kylllmfes~~C~-----yC~~----   59 (182)
T COG2143           2 MRVLLIVLLIISLFLSACKSNNEKRSNID-------------VFDDNKSISPNDKYLLLMFESNGCS-----YCER----   59 (182)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHH-------------HHHHHHHCCCCCCEEEEEECCCCCH-----HHHH----
T ss_conf             00199999999999999717804432255-------------6777874595675899997589970-----7999----


Q ss_pred             CCCEEECCCCCC-HHHHHHHHHCCCCCCEEEEE-ECCCCEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             530121332024-76787676248787246665-21541255416665456888888876410255
Q gi|254780707|r   79 TIDIVNSSRKIT-QNELDECKKHGVSDIQEVTI-GHDGILLVSDRDMVSVSLTVEDLYKALASYLI  142 (346)
Q Consensus        79 ~~dig~ssr~l~-~~E~~~~~~~~~~~~~~~~v-~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~  142 (346)
                            ..+.++ +.+++.....+.   ....+ ..+.-.+..+.......++.++|++.|.....
T Consensus        60 ------fKKd~~~~krlrEylk~hf---~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          60 ------FKKDLKNVKRLREYLKEHF---SAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             ------HHHHHCCHHHHHHHHHHCE---EEEEEEECCCCCEEEECCCEEEEECHHHHHHHHCCCCC
T ss_conf             ------9886246387999976275---89999831576267412765455439999987355568


No 122
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=32.06  E-value=34  Score=14.28  Aligned_cols=82  Identities=13%  Similarity=0.083  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHHHHHH-HHHCCCCCCCCEEEEEECCHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCHHH-HHHHHHHCCC
Q ss_conf             924899999999999-983142013767999803425899999999-9998779807999815762057-8988521013
Q gi|254780707|r    1 MRFFFVVLMCFVVLE-VYCGTGTFARNRIRIAGSSTLFPYSKIIAE-NFSEYFPEFKTPFVESGGSSVG-LKEFCRGIGD   77 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~-~~~~~~~~a~~~I~i~GSst~~P~~~~~a~-~y~~~~~~~~~~~~~~~GSg~G-i~~~~~G~~~   77 (346)
                      ||++..+.-++.++. ++.+..+.+ ..|+++=-+.+-|.....++ .|.|.. +..+ --.--.||+- +.++.+|.  
T Consensus         4 ~~r~~~l~~~~aa~a~~l~~~~Aqa-~~vtVgYQt~~eP~kvaqADg~~aK~~-gati-DWRkFdSG~~vv~AlASGd--   78 (334)
T COG4521           4 LRRISSLSSLLAALAFVLLAFAAQA-VDVTVGYQTSAEPAKVAQADGAFAKES-GATI-DWRKFDSGASIVRALASGD--   78 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEECCCCCCCCCCCCHHHHHC-CCCC-CHHHCCCHHHHHHHHHCCC--
T ss_conf             7778888889999998876766422-316886540357520213463567760-7854-5110475368999986288--


Q ss_pred             CCCCEEECC-CCC
Q ss_conf             353012133-202
Q gi|254780707|r   78 DTIDIVNSS-RKI   89 (346)
Q Consensus        78 ~~~dig~ss-r~l   89 (346)
                        ++||..- .|+
T Consensus        79 --vqiG~iGSspl   89 (334)
T COG4521          79 --VQIGNIGSSPL   89 (334)
T ss_pred             --CCCCCCCCCHH
T ss_conf             --61046578566


No 123
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=31.95  E-value=34  Score=14.27  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=10.1

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             924899999999999
Q gi|254780707|r    1 MRFFFVVLMCFVVLE   15 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~   15 (346)
                      ||+++++++++++++
T Consensus         1 mk~~~~~~~~~~~l~   15 (201)
T PRK00031          1 MKKLLIAALLAAALV   15 (201)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             915999999999987


No 124
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770    Bacterial binding protein-dependent transport systems ,  are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown ,  that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems  to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices.    This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=31.89  E-value=34  Score=14.26  Aligned_cols=142  Identities=9%  Similarity=0.122  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHHHHHH-H--CC---------CC----CC---------CCEEEE--EECCHHHHHHHHH---HHHHHHH
Q ss_conf             92489999999999998-3--14---------20----13---------767999--8034258999999---9999987
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVY-C--GT---------GT----FA---------RNRIRI--AGSSTLFPYSKII---AENFSEY   50 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~-~--~~---------~~----~a---------~~~I~i--~GSst~~P~~~~~---a~~y~~~   50 (346)
                      |||++.++++++.+++. +  ++         ..    .+         .+.|+.  -++....-+...|   .+..+|+
T Consensus         1 mkr~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~g~~P~e~~~~~~~~~~pL~~~Lek~   80 (299)
T TIGR01098         1 MKRLLALLAALLVASLAAACGSSEIDNRDCAAKAADAADADADVEKSETPKELNFGILPGENASNLARRWEPLKDYLEKK   80 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             94788999999999999875420014543565510010156212103677726899844887557777668999988875


Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCC--CCCHHHHHHHHHCCCCCCEEE---EEE-----CCCCEEEEC
Q ss_conf             7980799981576205789885210133530121332--024767876762487872466---652-----154125541
Q gi|254780707|r   51 FPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR--KITQNELDECKKHGVSDIQEV---TIG-----HDGILLVSD  120 (346)
Q Consensus        51 ~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr--~l~~~E~~~~~~~~~~~~~~~---~v~-----~d~i~i~~n  120 (346)
                      - +++|..+-+.-    ...+++|..++++|||.-+-  .+-......     ..++...   .+.     .+--+++++
T Consensus        81 L-g~kV~~~~~~d----Y~a~IEamr~g~~D~a~~g~~sY~~A~~~~~-----~~~~a~~~~~~~~~~g~~~Y~S~~iv~  150 (299)
T TIGR01098        81 L-GIKVELFVATD----YSAVIEAMRFGRVDIAWFGPSSYVLAHRRAN-----AEAFALTAIRYVSTDGSPGYYSVIIVK  150 (299)
T ss_pred             C-CCCEEEEEECC----CCCEEEEECCCCEEEEEECCCHHHEEEECCC-----CCHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf             5-88679986168----3103342326807898347851232200138-----701213443311688898348999983


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH
Q ss_conf             66654568888888764102555553236730232310011122450354488542357
Q gi|254780707|r  121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR  179 (346)
Q Consensus       121 ~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~  179 (346)
                      ++                           .+|+.|.|+-..|....+-..-|...||.-
T Consensus       151 ~d---------------------------S~i~~~~DlL~~LKGK~~af~Dp~STSG~l  182 (299)
T TIGR01098       151 AD---------------------------SPIKSLKDLLKKLKGKTFAFGDPASTSGYL  182 (299)
T ss_pred             CC---------------------------CCCCCHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf             89---------------------------996338999975079759850688751247


No 125
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=30.54  E-value=36  Score=14.13  Aligned_cols=54  Identities=13%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH
Q ss_conf             2489999999999998314201376799980342589999999999987798079998157620578
Q gi|254780707|r    2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGL   68 (346)
Q Consensus         2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi   68 (346)
                      +..+.++++++++.+++++++.+.            +..+.+.+.|.+.. +.....++...+|.|-
T Consensus         3 ~~~~~~~~~~~l~~~f~~~~~~~~------------~~~~~l~~~~~~i~-~~s~~f~q~~~~g~~~   56 (211)
T COG2834           3 LMMMKLLLALALLLLFLSACAQAG------------EAASQLKERLAKVK-SYSASFTQTVESGSGK   56 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHC-CEEEEEEEEEECCCCC
T ss_conf             378999999999999988887745------------99999999986304-1247999996159961


No 126
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=30.18  E-value=29  Score=14.65  Aligned_cols=26  Identities=31%  Similarity=0.416  Sum_probs=10.8

Q ss_pred             HHHHHHCHHHCCCCCHHH----HCCCCCCC
Q ss_conf             999974987405220277----55963489
Q gi|254780707|r  304 YVSFSVSDEMMAPDSQLF----QYGLIPIS  329 (346)
Q Consensus       304 Fl~~~ls~~~~~~~~~~~----~~GyvPLp  329 (346)
                      =+.|++|++-.-.|.++.    +-|||||+
T Consensus         7 QvEyYFSd~NL~~D~fLr~~md~~G~Vpl~   36 (73)
T cd08038           7 QIEYYFSTENLERDFFLRRKMDLQGFLPIS   36 (73)
T ss_pred             HHHHCCCHHHCCCCHHHHHHCCCCCCEEHH
T ss_conf             668202665513179999841878989679


No 127
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276   This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=30.02  E-value=20  Score=15.50  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=31.5

Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
Q ss_conf             679998034258999999999998779807999815762057898
Q gi|254780707|r   26 NRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKE   70 (346)
Q Consensus        26 ~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~   70 (346)
                      -.-+.++++-|.||.+++|++-     |+....|.++|=|+-|++
T Consensus       282 PvssGd~~pYVTPlVRKLA~~~-----GvDLssVkGTGvGGRIRK  321 (607)
T TIGR02927       282 PVSSGDSSPYVTPLVRKLAKEK-----GVDLSSVKGTGVGGRIRK  321 (607)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHC-----CCCCCCCEECCCCCCCCH
T ss_conf             5124688861003468777626-----831034111134552005


No 128
>CHL00132 psaF photosystem I subunit III; Validated
Probab=29.71  E-value=37  Score=14.05  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=16.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             924899999999999983142013
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFA   24 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a   24 (346)
                      ||+++.+++++.+++.+....+.+
T Consensus         1 Mrr~~a~~l~~~l~~~~ap~~a~A   24 (185)
T CHL00132          1 MKKFNLIFLLAALLLTLNPNIALA   24 (185)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             906999999999999368622110


No 129
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770    This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria .  .
Probab=29.35  E-value=38  Score=14.02  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             CCCCCCC-EEEEEEEEECCCCCC----------CHHHHHHHHHHHCH
Q ss_conf             2798750-367899970788566----------88999999997498
Q gi|254780707|r  276 VSGLYPI-SRPLLFYVKRQHFNS----------VLGLREYVSFSVSD  311 (346)
Q Consensus       276 ~~g~YPl-~r~ly~yv~~~~~~~----------~~~~~~Fl~~~ls~  311 (346)
                      .+-..|= +-+||++++....+.          ..++++||+++-|+
T Consensus       323 ~Aa~~P~kT~YLYFva~~~klG~h~F~~~l~~Hnka~~~Yl~~~~~~  369 (373)
T TIGR00247       323 QAAAHPKKTDYLYFVAKGSKLGGHKFTKNLKEHNKAVQDYLKSFKTE  369 (373)
T ss_pred             HHHHCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             99508667873689984650155134321556657899988653000


No 130
>PRK09810 entericidin A; Provisional
Probab=28.25  E-value=39  Score=13.97  Aligned_cols=21  Identities=24%  Similarity=0.380  Sum_probs=12.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             924899999999999983142
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTG   21 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~   21 (346)
                      ||+++.+++....+...|.++
T Consensus         2 mkrli~lil~~~~ll~gcnta   22 (41)
T PRK09810          2 MKRLIVLVLLASTLLTGCNTA   22 (41)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             389999999999998256212


No 131
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=28.15  E-value=40  Score=13.89  Aligned_cols=48  Identities=19%  Similarity=0.186  Sum_probs=24.7

Q ss_pred             CCHHHHHHHHHH---HHHHHHCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHHHH
Q ss_conf             924899999999---9999831420137679998-0342589999999999987
Q gi|254780707|r    1 MRFFFVVLMCFV---VLEVYCGTGTFARNRIRIA-GSSTLFPYSKIIAENFSEY   50 (346)
Q Consensus         1 Mk~~~~~~~~~~---~l~~~~~~~~~a~~~I~i~-GSst~~P~~~~~a~~y~~~   50 (346)
                      ||+..+++++++   ++++++|++  ....++.. |.=|..-++..+-+.|.+.
T Consensus         1 Mkkkk~~~~~~~~~~~l~LaaC~s--~~~vat~kgg~IT~~e~y~~lk~~~g~~   52 (283)
T PRK02998          1 MKKKKLFIGTIISCVVLALSACGS--SDNVVTSKVGNITEKELSKELRQKYGES   52 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC--CCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             935899999999999999986689--9817984399283999999999999999


No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=27.82  E-value=40  Score=13.86  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHH--HHHHHCCCCCCCCEEEEEEC-CHHHHH
Q ss_conf             9248999999999--99983142013767999803-425899
Q gi|254780707|r    1 MRFFFVVLMCFVV--LEVYCGTGTFARNRIRIAGS-STLFPY   39 (346)
Q Consensus         1 Mk~~~~~~~~~~~--l~~~~~~~~~a~~~I~i~GS-st~~P~   39 (346)
                      |+.++.+.+.+++  ++.++++.|.|+-.|.|.+. ....|+
T Consensus         1 ~~~~~~l~~~~~~~~~l~~~~~~A~A~L~IeIt~g~~~~~pI   42 (430)
T PRK02889          1 MSLMTKLGLRALVASCLIAAGGAAHAQLNVEITGVGATQFPI   42 (430)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEE
T ss_conf             917998999999999998621020278999993578870727


No 133
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=27.80  E-value=37  Score=14.06  Aligned_cols=17  Identities=18%  Similarity=0.479  Sum_probs=9.7

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             92489999999999998
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVY   17 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~   17 (346)
                      ||+++.++.++++|+.+
T Consensus         1 Mkk~~~l~~~~l~LagC   17 (26)
T pfam08139         1 MKKLLLLLLALLLLAGC   17 (26)
T ss_pred             CHHHHHHHHHHHHHHCC
T ss_conf             96699999999998233


No 134
>PRK08139 enoyl-CoA hydratase; Validated
Probab=27.05  E-value=41  Score=13.85  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             8999999999998--77980799981576205789885210
Q gi|254780707|r   37 FPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGI   75 (346)
Q Consensus        37 ~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~   75 (346)
                      ..++..+.+.+..  .++++++.++.+.|     +.||+|.
T Consensus        36 ~~m~~el~~~l~~~~~d~~vr~vvltg~G-----~~FcaG~   71 (265)
T PRK08139         36 EAMLAALQAALDAIAADPSVRVVVLAAAG-----KAFCAGH   71 (265)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCC
T ss_conf             99999999999999758993599996799-----8642787


No 135
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=26.86  E-value=33  Score=14.36  Aligned_cols=29  Identities=17%  Similarity=0.163  Sum_probs=18.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             92489999999999998314201376799
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIR   29 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~   29 (346)
                      ||.+-+++.++.++.+++|++....+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~c~~~~~p~~~~   29 (177)
T PRK10477          1 MRLLPVVAAVTAAFLVVACSSPTPPKGVT   29 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             94078999999999997646999999884


No 136
>PRK13513 putative outer membrane receptor; Provisional
Probab=26.83  E-value=42  Score=13.76  Aligned_cols=38  Identities=11%  Similarity=0.083  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEECCHHHHH
Q ss_conf             248999999999999831420137------67999803425899
Q gi|254780707|r    2 RFFFVVLMCFVVLEVYCGTGTFAR------NRIRIAGSSTLFPY   39 (346)
Q Consensus         2 k~~~~~~~~~~~l~~~~~~~~~a~------~~I~i~GSst~~P~   39 (346)
                      +++.+.+++++++++++++++.|+      +.|.+.++-+..++
T Consensus         6 ~~~~~~~~~a~~~~~~~~~~~~aa~~~~~le~ivVTAtr~~~~~   49 (660)
T PRK13513          6 QRFRKTHSAALVIAAVISSQGYAAEKTTPTDTMVVTASGFQQRI   49 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCH
T ss_conf             54437999999999987568863767889872999704874687


No 137
>PRK10082 putative DNA-binding transcriptional regulator; Provisional
Probab=26.10  E-value=43  Score=13.68  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC
Q ss_conf             0137679998034258-9999999999987798079998157620578988521013353012133
Q gi|254780707|r   22 TFARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS   86 (346)
Q Consensus        22 ~~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss   86 (346)
                      ......|+|+.+.++. .+...+...|...++   . .++...+..-+..+.+|.    +|++.+-
T Consensus        97 ~~~~g~l~i~a~~~~~~~~Lp~~l~~~~~~~~---~-~~~~~~~~~~~~~l~~g~----~D~~~~~  154 (303)
T PRK10082         97 DYAQRKIKIAAAHSLSLGLLPSIISQMPPLFT---W-AIEAIDVDEAVDKLREGQ----SDCIFSF  154 (303)
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC---E-EEEEECHHHHHHHHHCCC----CCEEEEC
T ss_conf             56754699983177699999999997441277---6-788504899999998799----7199983


No 138
>PRK10760 murein hydrolase B; Provisional
Probab=25.97  E-value=44  Score=13.67  Aligned_cols=51  Identities=16%  Similarity=0.242  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC------------------CEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             9248999999999999831420137------------------67999803425899999999999877
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR------------------NRIRIAGSSTLFPYSKIIAENFSEYF   51 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~------------------~~I~i~GSst~~P~~~~~a~~y~~~~   51 (346)
                      ||++..++.++++|++|.+.+....                  .....+|.-+..|=.+...++-.++|
T Consensus         1 ~r~~~~~~~~~~~l~~css~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdy~~~p~~~~Fi~~mv~~~   69 (357)
T PRK10760          1 KRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKH   69 (357)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             940486899999999851899999987677788888888887776766765333906999999999961


No 139
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=25.49  E-value=45  Score=13.62  Aligned_cols=20  Identities=5%  Similarity=-0.107  Sum_probs=16.9

Q ss_pred             CCCCCCEEECCCCCCCHHHH
Q ss_conf             12245035448854235789
Q gi|254780707|r  162 FPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       162 lp~~~I~~~~r~~~SGT~~~  181 (346)
                      .|+..|.+.+..|..|+.++
T Consensus        81 ~p~~~v~I~GHTD~~G~~~y  100 (160)
T PRK09967         81 TGLTHARMDGHTDNYGEDSY  100 (160)
T ss_pred             CCCCEEEEEEECCCCCCHHH
T ss_conf             89962999874799899899


No 140
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025   This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family.   AphA is a periplasmic acid phosphatase of Escherichia coli  belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space.
Probab=25.46  E-value=45  Score=13.61  Aligned_cols=31  Identities=13%  Similarity=0.084  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEE
Q ss_conf             924899999999999983142013-7679998
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFA-RNRIRIA   31 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a-~~~I~i~   31 (346)
                      ||+.+..++++++|+..+..++.| ..+..-.
T Consensus         1 Mkk~~~~ils~v~ll~a~a~pa~A~g~~~pyt   32 (248)
T TIGR01672         1 MKKVTKAILSVVALLTALAVPAVALGKKEPYT   32 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
T ss_conf             91578899999999999742312205878888


No 141
>PRK09733 putative fimbrial protein; Provisional
Probab=25.30  E-value=45  Score=13.60  Aligned_cols=33  Identities=9%  Similarity=0.067  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             9248999999999999831420137679998034
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS   34 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs   34 (346)
                      ||+.+++.+++++++.... ++....+|+..|.=
T Consensus         2 mKk~ll~~~~~~~~s~~~~-A~~~~G~V~F~G~I   34 (181)
T PRK09733          2 FKKSLLVAGVAMILSNNVF-ADEGHGIVKFKGEV   34 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHCCCCEEEEEEEE
T ss_conf             0688999999999866657-64488689999999


No 142
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=25.25  E-value=45  Score=13.59  Aligned_cols=19  Identities=16%  Similarity=0.123  Sum_probs=12.2

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9248999999999999831
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCG   19 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~   19 (346)
                      ||+++..+..+++++.+|.
T Consensus         1 mkrl~~~L~~ll~v~~L~l   19 (144)
T PRK02515          1 MKRLLSWLVRLLVVLSLLL   19 (144)
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             9179999999999999999


No 143
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=25.22  E-value=44  Score=13.65  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=10.6

Q ss_pred             CCHHHHHHHHHHHH-HHHHCC
Q ss_conf             92489999999999-998314
Q gi|254780707|r    1 MRFFFVVLMCFVVL-EVYCGT   20 (346)
Q Consensus         1 Mk~~~~~~~~~~~l-~~~~~~   20 (346)
                      ||..++++++++++ +.+|++
T Consensus         2 mr~~~L~~~~~~~f~LtGCsa   22 (174)
T TIGR02747         2 MRLKVLLLLACVAFLLTGCSA   22 (174)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             067899999999872002577


No 144
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE; InterPro: IPR011926    This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in Escherichia coli and related species.; GO: 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=24.43  E-value=37  Score=14.06  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             CCCCCHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf             13320011001110013445767895560
Q gi|254780707|r  247 FVGLSFYKNNADVLKLVPIDGIVPSMGTI  275 (346)
Q Consensus       247 y~~~~~~~~~~~~~~~~~~~~v~p~~~~i  275 (346)
                      |+.+.-..++..+++++.+.||+|..|.-
T Consensus        98 yv~FTgLVE~G~kLkavqVkGVepq~Eq~  126 (416)
T TIGR02213        98 YVKFTGLVERGAKLKAVQVKGVEPQAEQK  126 (416)
T ss_pred             CCEEEEEEECCCCEEEEEEECCCCCHHHH
T ss_conf             20121344217722289974588102355


No 145
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.84  E-value=40  Score=13.87  Aligned_cols=16  Identities=13%  Similarity=0.214  Sum_probs=7.1

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             9248999999999999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEV   16 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~   16 (346)
                      ||++++.++++++|+.
T Consensus         2 m~~~l~~~~~~~~L~G   17 (238)
T PRK12696          2 IRKLLAASCAVLLLSG   17 (238)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             5899999999999516


No 146
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=23.59  E-value=49  Score=13.41  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=14.0

Q ss_pred             HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC
Q ss_conf             999999974987405220277----55963489
Q gi|254780707|r  301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS  329 (346)
Q Consensus       301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp  329 (346)
                      +++=+.|++|++-.-.|.++.    +-|||||.
T Consensus         4 I~kQvEfYFSd~NL~~D~fL~~~m~~~G~Vpi~   36 (73)
T cd08034           4 IKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIA   36 (73)
T ss_pred             HHHHHHHHCCHHHCCCCHHHHHHCCCCCCEEHH
T ss_conf             999999873685416389999861889989469


No 147
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=23.45  E-value=49  Score=13.39  Aligned_cols=40  Identities=18%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC
Q ss_conf             8999999999998--7798079998157620578988521013353012133
Q gi|254780707|r   37 FPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS   86 (346)
Q Consensus        37 ~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss   86 (346)
                      ..++..+.+.+..  .+|+++++++.    |.| +.||+|     .|+....
T Consensus        18 ~~m~~eL~~a~~~~~~d~~vr~vVl~----g~G-~~FcAG-----~Dl~~~~   59 (240)
T PRK06072         18 LETRNELISALREINADPKIRVVILT----GEG-RAFSVG-----ADLSEIS   59 (240)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEE----CCC-CCEECC-----CCHHHHH
T ss_conf             99999999999999758990699998----799-865515-----8878874


No 148
>pfam07172 GRP Glycine rich protein family. This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=23.06  E-value=35  Score=14.19  Aligned_cols=19  Identities=11%  Similarity=0.053  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999831420137
Q gi|254780707|r    7 VLMCFVVLEVYCGTGTFAR   25 (346)
Q Consensus         7 ~~~~~~~l~~~~~~~~~a~   25 (346)
                      ++.++++..++.++.+.++
T Consensus         8 lLglllA~~lLIsSevaa~   26 (91)
T pfam07172         8 LLGLLLAAVLLISSEVAAA   26 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 149
>KOG3842 consensus
Probab=22.98  E-value=34  Score=14.30  Aligned_cols=85  Identities=15%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC-CHHHH
Q ss_conf             33530121332024767876762487872466652154125541666545688888887641025555532367-30232
Q gi|254780707|r   77 DDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFN-PLKKW  155 (346)
Q Consensus        77 ~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g-~i~~W  155 (346)
                      +..+||..+|..+-.+|.....      ..+-++-.-+--|..+..+|-       .+.||+...+--..||.| +..+|
T Consensus       118 es~IDFvV~DT~~g~~~~~da~------v~qSTISRfACRIl~dR~~p~-------~AriyAAGFDss~NIflgeka~KW  184 (429)
T KOG3842         118 ESPIDFVVTDTWPGSQEHSDAQ------VRQSTISRFACRILCDRNEPY-------TARIYAAGFDSSKNIFLGEKAAKW  184 (429)
T ss_pred             CCCCCEEEECCCCCCCCCCCCH------HHHHHHHHHEEEEEECCCCCC-------CEEEEECCCCCCCCEECCCHHHCC
T ss_conf             8874369961567886555402------556566554002331368965-------036774135655633304132114


Q ss_pred             HHCCC---CCCCCCCEEECCCC
Q ss_conf             31001---11224503544885
Q gi|254780707|r  156 SEIRP---DFPEVRIAIYVPSG  174 (346)
Q Consensus       156 ~~~~~---~lp~~~I~~~~r~~  174 (346)
                      .+.++   .|.-.-+.+.||.+
T Consensus       185 ~~~dg~mDGLTTNGVLvmHPk~  206 (429)
T KOG3842         185 KTSDGEMDGLTTNGVLVMHPKG  206 (429)
T ss_pred             CCCCCCCCCCCCCCEEEECCCC
T ss_conf             3788630241006669973588


No 150
>PRK10260 hypothetical protein; Provisional
Probab=22.82  E-value=50  Score=13.32  Aligned_cols=25  Identities=16%  Similarity=-0.007  Sum_probs=19.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9248999999999999831420137
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR   25 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~   25 (346)
                      ||+.+..+++++.+.+.+|.++.|.
T Consensus         1 ~~~~~~~~~~~~~~~~~f~~~a~A~   25 (306)
T PRK10260          1 MNMKLKTLFAAAFAVVGFCSTASAV   25 (306)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHCE
T ss_conf             9520999999999999857610201


No 151
>PRK08223 hypothetical protein; Validated
Probab=22.69  E-value=51  Score=13.31  Aligned_cols=84  Identities=20%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEE--ECCC---CCCHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             89999999999987798079998157620578988521013353012--1332---024767876762487872466652
Q gi|254780707|r   37 FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIV--NSSR---KITQNELDECKKHGVSDIQEVTIG  111 (346)
Q Consensus        37 ~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig--~ssr---~l~~~E~~~~~~~~~~~~~~~~v~  111 (346)
                      .|=.+..++.-.+.||++++..+...=+..-+..|++|     +|+.  ++|-   +.+-.-.+.|...++..+..-+++
T Consensus        80 ~~Kveva~e~l~~INP~v~V~~~~~~lt~~N~~~~l~~-----~DvVvDg~DnF~~~tR~ll~~ac~~~giP~v~~a~l~  154 (287)
T PRK08223         80 RPKVEVMREIALDINPELEIRAFPEGIGKENLDTFLDG-----VDVYVDGLDFFVFDIRRLLFREAQARGIPALTAAPLG  154 (287)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             85899999999986989879995878998999999867-----9999979667883189999999998599849831541


Q ss_pred             CCCCEEEECCCCCC
Q ss_conf             15412554166654
Q gi|254780707|r  112 HDGILLVSDRDMVS  125 (346)
Q Consensus       112 ~d~i~i~~n~~~~~  125 (346)
                      .++-+.+++++++.
T Consensus       155 f~gq~~vF~P~g~~  168 (287)
T PRK08223        155 FSTAWLVFDPGGMS  168 (287)
T ss_pred             CCCEEEEECCCCCC
T ss_conf             03069998899978


No 152
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=22.54  E-value=51  Score=13.29  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEEECCH
Q ss_conf             9248999999999999831420137-------6799980342
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFAR-------NRIRIAGSST   35 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~-------~~I~i~GSst   35 (346)
                      ||+.++.+++.+   +++++++.|.       ++|.|.|.--
T Consensus         1 MKk~~lA~ai~a---~l~s~~a~AaeVYn~dg~~ldigGrv~   39 (351)
T PRK10159          1 MKKSTLALVVMG---IVASASVQAAEIYNKDGNKLDVYGKVK   39 (351)
T ss_pred             CCHHHHHHHHHH---HHHCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf             947389999999---987265317999978998897835898


No 153
>PRK11482 putative DNA-binding transcriptional regulator; Provisional
Probab=22.35  E-value=52  Score=13.27  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      .+.+++|+.+..+.. ++..+...+.+..|++.+..+.   +......+..|.    +|++....+..+.          
T Consensus        64 ~~~~~~i~~~~~~~~~~lp~l~~~l~~~aP~i~l~~~~---~~~~~~~L~~~~----~Dl~i~~~~~~~~----------  126 (266)
T PRK11482         64 KQRTITIATTPSVGALVLPVIYQAIKPHYPQLLLRNIP---ISDAENQLSQFQ----TDLIIDTHSCTNR----------  126 (266)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHCCC----CCEEEECCCCCCC----------
T ss_conf             65259999758899999999999999779986999568---657889985699----8889856888987----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCC--CCCHHHHH
Q ss_conf             872466652154125541666545--68888888
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSV--SLTVEDLY  134 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~--~lt~~~l~  134 (346)
                       .+...++..|..+++..++.|..  .+|.+++.
T Consensus       127 -~~~~~~L~~d~~v~v~~~~HP~~~~~~t~e~~~  159 (266)
T PRK11482        127 -TIQHHVLFTDNMVLVCRQGHPCLSLEDDEETLD  159 (266)
T ss_pred             -CEEEEEEEECCEEEEEECCCCCCCCCCCHHHHH
T ss_conf             -638999994288999989685569999999996


No 154
>PRK10632 putative DNA-binding transcriptional regulator; Provisional
Probab=22.34  E-value=52  Score=13.26  Aligned_cols=81  Identities=12%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             CCCCCEEEEEECCHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC
Q ss_conf             013767999803425-8999999999998779807999815762057898852101335301213320247678767624
Q gi|254780707|r   22 TFARNRIRIAGSSTL-FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH  100 (346)
Q Consensus        22 ~~a~~~I~i~GSst~-~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~  100 (346)
                      .....+|+|+=+.++ ..++..+-.+|.+.||++++.......    ...+....    +|++...-++.+..       
T Consensus        88 ~~~~G~LrI~~~~~~~~~~l~~~l~~f~~~yP~i~l~l~~~~~----~~dl~~~~----~Diair~g~~~~~~-------  152 (309)
T PRK10632         88 NTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIP----APDLIADG----LDVVIRVGALQDSS-------  152 (309)
T ss_pred             CCCCEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEECCCC----CCCHHHCC----CCCCEEECCCCCCC-------
T ss_conf             7874058841571776623061567888768984257761687----46355505----53103407889988-------


Q ss_pred             CCCCCEEEEEECCCCEEEECC
Q ss_conf             878724666521541255416
Q gi|254780707|r  101 GVSDIQEVTIGHDGILLVSDR  121 (346)
Q Consensus       101 ~~~~~~~~~v~~d~i~i~~n~  121 (346)
                          +...+++....+++..+
T Consensus       153 ----l~ar~L~~~~~~l~Asp  169 (309)
T PRK10632        153 ----LFSRRLGAMPMVVCAAK  169 (309)
T ss_pred             ----EEEEEEEECCCEEEECH
T ss_conf             ----38999140450587278


No 155
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699   Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.
Probab=22.29  E-value=30  Score=14.55  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=6.7

Q ss_pred             CCEEECCCCC---CCHHHHH
Q ss_conf             5035448854---2357899
Q gi|254780707|r  166 RIAIYVPSGK---HGTREVL  182 (346)
Q Consensus       166 ~I~~~~r~~~---SGT~~~F  182 (346)
                      |=+++++...   |++.|++
T Consensus        66 pARlfG~K~~~lPg~~vE~L   85 (364)
T TIGR00113        66 PARLFGRKESFLPGGKVEVL   85 (364)
T ss_pred             CCCCCCCCCCCCCCCEEEEE
T ss_conf             10001251101887407998


No 156
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=21.84  E-value=53  Score=13.21  Aligned_cols=46  Identities=15%  Similarity=0.197  Sum_probs=20.1

Q ss_pred             CCHHHHHHHH--HHHHHHHHCCCCCCCCEEEEEECCHH--HHHHHHHHHH
Q ss_conf             9248999999--99999983142013767999803425--8999999999
Q gi|254780707|r    1 MRFFFVVLMC--FVVLEVYCGTGTFARNRIRIAGSSTL--FPYSKIIAEN   46 (346)
Q Consensus         1 Mk~~~~~~~~--~~~l~~~~~~~~~a~~~I~i~GSst~--~P~~~~~a~~   46 (346)
                      ||+..+++++  ++++++.+|+.....++|--.+...+  .-|+..+-+.
T Consensus         1 mkkK~i~~~~~~~svl~LaaC~~~~~~~~VAtv~g~~IT~~df~~~lk~~   50 (285)
T PRK03002          1 MRGKHIFIITALISILMLSACGQKNSSATVATATDSTITKSDFEKQLKDR   50 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECHHHHHHHHHHH
T ss_conf             96018999999999999998457999977998689787399999999988


No 157
>pfam04710 Pellino Pellino. Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase.
Probab=21.74  E-value=48  Score=13.43  Aligned_cols=84  Identities=18%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             CCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC-CHHHHHH
Q ss_conf             530121332024767876762487872466652154125541666545688888887641025555532367-3023231
Q gi|254780707|r   79 TIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFN-PLKKWSE  157 (346)
Q Consensus        79 ~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g-~i~~W~~  157 (346)
                      .+||..+|--.-..+.+.      ..+.+-+|-..|--|+.....|-       .++||++..+...+|++| +.++|++
T Consensus       107 ~IDFVV~DTvpG~~~~~~------~~~~qSTISRfACRI~~dR~pPy-------~ARiyAaGFDss~NIfLGekA~KW~~  173 (416)
T pfam04710       107 PIDFVVTDTVPGGQDKKE------TPITQSTISRFACRIVCDREPPY-------TARIYAAGFDSSKNIFLGEKAAKWQN  173 (416)
T ss_pred             CCCEEEECCCCCCCCCCC------CCCCCCHHHHEEEEEEECCCCCC-------EEEEEECCCCCCCCEEECCCCCCCCC
T ss_conf             756698467678776554------66330231010577885268985-------46898503576673650554544447


Q ss_pred             CCC---CCCCCCCEEECCCCC
Q ss_conf             001---112245035448854
Q gi|254780707|r  158 IRP---DFPEVRIAIYVPSGK  175 (346)
Q Consensus       158 ~~~---~lp~~~I~~~~r~~~  175 (346)
                      .++   +|--.-+.+.||..+
T Consensus       174 ~~~~mDGLTTNGVLimhP~~~  194 (416)
T pfam04710       174 PDGEMDGLTTNGVLVMHPRGG  194 (416)
T ss_pred             CCCCCCCCCCCCEEEECCCCC
T ss_conf             898634642166599736888


No 158
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=21.35  E-value=54  Score=13.15  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=11.0

Q ss_pred             HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC
Q ss_conf             999999974987405220277----55963489
Q gi|254780707|r  301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS  329 (346)
Q Consensus       301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp  329 (346)
                      +++=+.|++|++-.-.|.++.    +-|||||.
T Consensus         4 I~kQiEyYFSd~NL~~D~fL~~~m~~~g~Vpi~   36 (75)
T cd08031           4 LKRQLEYYFSRENLANDAYLLSQMDSDQYVPIW   36 (75)
T ss_pred             HHHHHHHHCCHHHHHCCHHHHHHHCCCCCEEHH
T ss_conf             999899884686521389999973768978729


No 159
>PRK11023 hypothetical protein; Provisional
Probab=20.75  E-value=56  Score=13.08  Aligned_cols=19  Identities=11%  Similarity=0.006  Sum_probs=13.2

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9248999999999999831
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCG   19 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~   19 (346)
                      ||.+..+++++.++.+..|
T Consensus         1 mk~~~~l~~l~~~~~L~GC   19 (191)
T PRK11023          1 MKALSPLAVLISALLLQGC   19 (191)
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             9448899999999997268


No 160
>PRK02944 OxaA-like protein precursor; Validated
Probab=20.41  E-value=57  Score=13.03  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=22.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-----HHHHHHH
Q ss_conf             9248999999999999831420137679998034-----2589999
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS-----TLFPYSK   41 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs-----t~~P~~~   41 (346)
                      |||.+.++.+++++.+..++|......++-..+.     .++|+..
T Consensus         1 mkk~~~~~~~~~~~~~~lsgC~~~~~~~~~~~~g~~~~~~v~p~~~   46 (255)
T PRK02944          1 MKKKLGLLAMVVALMAILAGCSEVNQPITPKSTGIWNEYFVYPLSQ   46 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9289999999999999996246889999999998189999999999


Done!