Query gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 346 No_of_seqs 141 out of 1801 Neff 9.3 Searched_HMMs 39220 Date Sun May 29 20:00:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780707.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG0226 PstS ABC-type phosphat 100.0 0 0 381.0 22.1 268 24-332 41-317 (318) 2 PRK10918 phosphate transporter 100.0 0 0 355.1 21.4 300 1-345 1-338 (346) 3 TIGR02136 ptsS_2 phosphate bin 99.9 4.5E-26 1.2E-30 163.9 5.8 258 27-328 44-308 (308) 4 COG0725 ModA ABC-type molybdat 99.4 9.3E-10 2.4E-14 73.1 21.1 247 1-329 1-258 (258) 5 PRK10677 modA molybdate transp 99.3 1.7E-09 4.2E-14 71.7 17.9 251 2-326 3-255 (257) 6 PRK04168 hypothetical protein; 99.2 1E-08 2.6E-13 67.3 20.8 117 1-124 5-124 (336) 7 TIGR00975 3a0107s03 phosphate 99.2 1.6E-11 4.2E-16 82.8 5.0 272 29-342 2-322 (324) 8 TIGR03227 PhnS 2-aminoethylpho 99.1 8.1E-09 2.1E-13 67.8 15.9 276 7-338 17-323 (367) 9 TIGR03261 phnS2 putative 2-ami 99.0 5.2E-08 1.3E-12 63.3 16.8 261 14-329 10-288 (334) 10 PRK10852 thiosulfate transport 98.8 3E-07 7.5E-12 59.1 14.7 263 10-341 11-301 (338) 11 PRK10752 sulfate transporter s 98.8 3.9E-07 9.9E-12 58.5 13.4 47 293-342 250-296 (329) 12 COG1613 Sbp ABC-type sulfate t 98.6 3.6E-06 9.1E-11 53.1 14.4 254 26-341 38-312 (348) 13 CHL00180 rbcR LysR transcripti 98.4 1.8E-05 4.6E-10 49.2 13.9 207 24-311 93-302 (307) 14 PRK11242 DNA-binding transcrip 98.4 4.5E-05 1.2E-09 47.0 15.3 201 23-310 88-289 (292) 15 PRK10837 putative DNA-binding 98.4 4.9E-05 1.2E-09 46.8 15.0 198 24-309 87-287 (291) 16 COG4588 AcfC Accessory coloniz 98.3 0.00017 4.4E-09 43.8 16.8 246 1-325 1-250 (252) 17 PRK09906 DNA-binding transcrip 98.2 0.00031 8E-09 42.3 16.9 201 24-310 88-289 (296) 18 TIGR03339 phn_lysR aminoethylp 98.1 0.00047 1.2E-08 41.3 14.7 196 22-307 83-278 (279) 19 PRK12679 cbl transcriptional r 98.1 0.00028 7.2E-09 42.6 13.4 202 23-309 90-292 (316) 20 PRK09501 potD spermidine/putre 98.0 0.00075 1.9E-08 40.2 16.4 281 1-341 1-309 (348) 21 pfam03466 LysR_substrate LysR 98.0 0.00055 1.4E-08 40.9 14.3 200 23-309 3-205 (209) 22 PRK12683 transcriptional regul 98.0 0.00047 1.2E-08 41.3 13.3 203 23-311 90-294 (308) 23 PRK11205 tbpA thiamine transpo 97.9 0.00056 1.4E-08 40.9 13.2 72 11-84 4-79 (326) 24 PRK12684 transcriptional regul 97.9 0.00082 2.1E-08 40.0 13.3 202 23-310 90-293 (313) 25 COG4150 CysP ABC-type sulfate 97.8 0.00012 3E-09 44.7 8.1 277 1-340 6-305 (341) 26 PRK09986 DNA-binding transcrip 97.7 0.0025 6.4E-08 37.3 15.2 199 23-309 78-277 (278) 27 PRK12682 transcriptional regul 97.6 0.0026 6.5E-08 37.2 11.8 201 24-311 91-294 (309) 28 COG1840 AfuA ABC-type Fe3+ tra 97.6 0.0023 5.9E-08 37.4 11.4 234 43-330 1-253 (299) 29 TIGR03431 PhnD phosphonate ABC 97.5 0.0049 1.2E-07 35.7 16.8 58 286-343 227-286 (288) 30 PRK03601 transcriptional regul 97.5 0.0052 1.3E-07 35.5 15.4 83 25-123 88-171 (275) 31 pfam01547 SBP_bac_1 Bacterial 97.5 0.0031 7.9E-08 36.8 11.2 55 32-89 2-60 (260) 32 COG2998 TupB ABC-type tungstat 97.5 0.0063 1.6E-07 35.1 15.2 135 14-181 19-155 (280) 33 PRK10974 glycerol-3-phosphate 97.5 0.0066 1.7E-07 35.0 18.8 111 11-124 12-157 (439) 34 COG4143 TbpA ABC-type thiamine 97.3 0.0099 2.5E-07 34.0 14.2 118 1-123 1-140 (336) 35 COG1653 UgpB ABC-type sugar tr 97.3 0.01 2.6E-07 33.9 12.0 59 27-86 32-94 (433) 36 PRK11151 DNA-binding transcrip 97.3 0.011 2.8E-07 33.7 14.9 200 24-311 89-292 (305) 37 PRK03537 hypothetical protein; 97.2 0.0044 1.1E-07 35.9 9.3 41 277-329 146-186 (188) 38 TIGR01256 modA molybdate ABC t 97.2 0.013 3.3E-07 33.3 14.2 216 36-324 4-225 (225) 39 PRK12681 cysB transcriptional 97.2 0.013 3.3E-07 33.3 11.6 124 23-189 90-214 (324) 40 PRK11233 nitrogen assimilation 97.0 0.022 5.6E-07 32.0 18.1 200 22-311 87-290 (305) 41 PRK11553 alkanesulfonate trans 97.0 0.015 3.8E-07 32.9 10.1 84 1-88 1-86 (314) 42 PRK11716 DNA-binding transcrip 96.9 0.025 6.4E-07 31.7 13.9 84 23-121 64-148 (269) 43 PRK09495 glnH glutamine ABC tr 96.8 0.014 3.6E-07 33.1 8.7 109 1-123 1-120 (247) 44 COG2358 Imp TRAP-type uncharac 96.6 0.011 2.8E-07 33.7 7.0 124 24-186 24-157 (321) 45 COG1910 Periplasmic molybdate- 96.6 0.038 9.6E-07 30.7 9.7 194 36-312 5-201 (223) 46 PRK09474 malE maltose ABC tran 96.6 0.046 1.2E-06 30.2 10.8 120 1-124 1-146 (394) 47 PRK10682 putrescine transporte 96.4 0.055 1.4E-06 29.8 16.0 116 2-124 6-147 (370) 48 PRK09791 putative DNA-binding 96.0 0.092 2.3E-06 28.6 16.1 92 21-126 90-182 (302) 49 TIGR00971 3a0106s03 sulfate AB 95.8 0.11 2.9E-06 28.1 10.5 249 28-340 19-288 (320) 50 PRK10341 DNA-binding transcrip 95.6 0.14 3.5E-06 27.6 14.8 196 25-310 96-296 (312) 51 PRK11260 cystine transporter s 95.4 0.17 4.4E-06 27.0 9.3 109 3-124 6-136 (264) 52 PRK12680 transcriptional regul 95.0 0.23 5.8E-06 26.4 12.5 124 23-188 90-214 (327) 53 COG2182 MalE Maltose-binding p 94.9 0.24 6.2E-06 26.2 15.6 66 267-335 284-350 (420) 54 PRK10797 glutamate and asparta 94.8 0.25 6.5E-06 26.1 8.9 88 26-125 40-145 (302) 55 PRK11139 DNA-binding transcrip 94.2 0.35 8.9E-06 25.3 12.9 80 24-122 92-172 (295) 56 PRK11013 DNA-binding transcrip 93.7 0.44 1.1E-05 24.8 11.8 121 24-188 92-213 (309) 57 COG0687 PotD Spermidine/putres 92.9 0.59 1.5E-05 24.1 17.9 282 1-335 2-317 (363) 58 PRK09701 D-allose transporter 90.9 1 2.6E-05 22.7 7.6 99 1-102 1-108 (311) 59 COG1638 DctP TRAP-type C4-dica 89.9 1.2 3.2E-05 22.3 8.0 87 1-88 1-94 (332) 60 COG1732 OpuBC Periplasmic glyc 89.6 1.3 3.4E-05 22.1 7.6 57 22-79 29-87 (300) 61 TIGR03418 chol_sulf_TF putativ 89.0 1.5 3.8E-05 21.9 13.2 58 23-88 86-144 (291) 62 PRK09508 leuO leucine transcri 88.9 1.5 3.8E-05 21.8 9.9 95 23-133 109-206 (314) 63 PRK03095 prsA peptidylprolyl i 86.8 2 5.2E-05 21.1 6.0 47 1-47 1-48 (287) 64 PRK05137 tolB translocation pr 86.1 0.9 2.3E-05 23.1 3.4 38 1-38 1-39 (437) 65 PRK11063 metQ DL-methionine tr 82.9 3.1 7.9E-05 20.1 16.4 140 1-181 1-145 (271) 66 COG0715 TauA ABC-type nitrate/ 82.4 3.2 8.3E-05 20.0 12.0 64 25-92 30-95 (335) 67 pfam06316 Ail_Lom Enterobacter 81.6 1.8 4.6E-05 21.4 3.4 31 1-31 1-34 (199) 68 PRK10355 xylF D-xylose transpo 80.3 3.9 9.9E-05 19.5 8.3 100 1-102 1-107 (330) 69 PRK10653 D-ribose transporter 76.7 5 0.00013 18.9 10.1 82 1-84 3-87 (295) 70 PRK09934 putative fimbrial pro 70.6 6 0.00015 18.5 3.6 34 1-35 1-36 (171) 71 PRK09408 ompX outer membrane p 70.2 5.8 0.00015 18.6 3.5 32 1-32 1-32 (171) 72 COG3221 PhnD ABC-type phosphat 67.2 8.5 0.00022 17.6 10.7 20 324-343 275-294 (299) 73 PRK10959 outer membrane protei 65.4 6.2 0.00016 18.4 2.8 38 1-38 1-38 (212) 74 PRK10796 LPS-assembly lipoprot 65.1 9.4 0.00024 17.4 5.3 54 1-56 1-62 (196) 75 pfam08085 Entericidin Enterici 64.1 4.9 0.00012 19.0 2.1 30 1-34 1-30 (42) 76 PRK04405 prsA peptidylprolyl i 63.2 8.8 0.00022 17.6 3.3 33 1-34 5-38 (298) 77 PRK13486 bifunctional enteroba 62.6 10 0.00027 17.1 4.0 72 1-75 1-91 (696) 78 PRK04922 tolB translocation pr 60.4 11 0.00029 16.9 3.5 39 1-39 1-41 (439) 79 PRK01742 tolB translocation pr 58.4 11 0.00028 17.0 3.0 40 1-40 1-42 (430) 80 PRK11087 hypothetical protein; 57.4 13 0.00032 16.7 3.2 36 1-36 1-42 (238) 81 PRK03629 tolB translocation pr 56.2 9.8 0.00025 17.3 2.5 37 1-40 1-38 (430) 82 pfam02402 Lysis_col Lysis prot 55.9 4.2 0.00011 19.3 0.6 34 1-38 1-34 (46) 83 TIGR01000 bacteriocin_acc bact 53.9 12 0.0003 16.8 2.6 69 3-71 20-103 (476) 84 PRK11627 hypothetical protein; 52.8 15 0.00037 16.3 3.0 27 1-31 2-28 (192) 85 pfam07996 T4SS Type IV secreti 51.4 16 0.00042 16.0 4.4 32 1-34 1-32 (217) 86 PRK11074 putative DNA-binding 51.2 16 0.00042 16.0 9.0 89 23-125 89-178 (300) 87 pfam03401 Bug Tripartite trica 50.6 17 0.00043 16.0 10.7 91 40-135 2-98 (274) 88 PRK11917 bifunctional adhesin/ 50.5 17 0.00043 16.0 7.4 86 26-123 38-138 (259) 89 pfam12262 Lipase_bact_N Bacter 49.5 12 0.00031 16.7 2.1 23 1-23 1-23 (269) 90 PRK00178 tolB translocation pr 48.8 18 0.00046 15.8 2.9 37 1-39 1-38 (433) 91 PRK12450 foldase protein PrsA; 48.3 18 0.00047 15.8 3.0 33 1-33 4-38 (309) 92 PRK11622 putative ABC transpor 47.7 19 0.00048 15.7 7.6 73 1-74 2-88 (401) 93 COG5510 Predicted small secret 47.4 12 0.0003 16.8 1.8 29 1-33 2-30 (44) 94 PRK10259 hypothetical protein; 46.5 20 0.0005 15.6 6.8 51 1-51 1-63 (86) 95 PRK13484 putative iron-regulat 46.4 18 0.00047 15.8 2.6 40 1-40 1-45 (682) 96 COG1464 NlpA ABC-type metal io 45.3 21 0.00052 15.5 11.5 27 288-315 228-254 (268) 97 PRK10641 btuB vitamin B12/coba 43.9 22 0.00055 15.4 3.5 38 1-40 2-40 (615) 98 PRK13697 cytochrome c6; Provis 42.9 19 0.00049 15.6 2.3 26 1-26 1-27 (111) 99 PRK10449 heat-inducible protei 42.0 21 0.00053 15.5 2.4 21 1-21 1-21 (140) 100 PRK10086 DNA-binding transcrip 41.9 23 0.00059 15.2 9.7 79 24-121 100-179 (311) 101 KOG1680 consensus 40.6 12 0.0003 16.8 0.9 40 39-86 65-104 (290) 102 TIGR03525 GldK gliding motilit 40.4 20 0.00051 15.5 2.1 18 1-18 1-18 (449) 103 COG2113 ProX ABC-type proline/ 40.3 25 0.00063 15.0 10.7 92 1-99 1-100 (302) 104 pfam09084 NMT1 NMT1/THI5 like. 40.3 25 0.00063 15.0 6.7 47 37-88 5-51 (216) 105 TIGR03502 lipase_Pla1_cef extr 39.1 23 0.00059 15.2 2.2 21 1-21 1-21 (792) 106 PRK04792 tolB translocation pr 38.6 23 0.00059 15.2 2.2 36 1-39 2-38 (450) 107 PRK13528 outer membrane recept 38.6 26 0.00067 14.9 3.0 33 1-33 3-42 (727) 108 cd07200 cPLA2_Grp-IVA Group IV 38.5 26 0.00067 14.9 2.6 24 51-75 39-62 (505) 109 COG4676 Uncharacterized protei 38.3 25 0.00064 15.0 2.3 71 1-75 1-73 (268) 110 pfam10566 Glyco_hydro_97 Glyco 38.3 27 0.00068 14.9 2.8 21 1-21 1-21 (643) 111 pfam09403 FadA Adhesion protei 37.9 25 0.00065 15.0 2.3 21 1-21 1-21 (126) 112 cd07323 LAM LA motif RNA-bindi 37.8 27 0.00068 14.8 2.4 29 301-329 4-36 (75) 113 pfam07901 DUF1672 Protein of u 37.5 27 0.0007 14.8 4.8 22 1-22 1-22 (304) 114 pfam06551 DUF1120 Protein of u 35.6 30 0.00075 14.6 3.9 65 1-96 1-68 (145) 115 PRK13883 conjugal transfer pro 35.1 25 0.00063 15.0 1.8 51 1-55 1-53 (156) 116 COG5567 Predicted small peripl 34.9 30 0.00077 14.6 2.6 19 1-19 1-19 (58) 117 TIGR01779 TonB-B12 TonB-depend 34.1 24 0.00061 15.1 1.6 78 1-80 1-104 (644) 118 pfam06510 DUF1102 Protein of u 33.9 31 0.0008 14.5 2.5 22 1-22 1-22 (183) 119 PRK10510 putative outer membra 33.9 31 0.0008 14.5 6.9 23 160-182 139-161 (219) 120 cd07201 cPLA2_Grp-IVB-IVD-IVE- 33.2 19 0.00049 15.7 1.0 23 51-74 48-70 (541) 121 COG2143 Thioredoxin-related pr 32.9 33 0.00083 14.4 3.0 111 1-142 2-116 (182) 122 COG4521 TauA ABC-type taurine 32.1 34 0.00086 14.3 2.8 82 1-89 4-89 (334) 123 PRK00031 lolA outer-membrane l 32.0 34 0.00087 14.3 2.3 15 1-15 1-15 (201) 124 TIGR01098 3A0109s03R phosphona 31.9 34 0.00087 14.3 6.4 142 1-179 1-182 (299) 125 COG2834 LolA Outer membrane li 30.5 36 0.00092 14.1 4.8 54 2-68 3-56 (211) 126 cd08038 LARP_2 La RNA-binding 30.2 29 0.00074 14.7 1.5 26 304-329 7-36 (73) 127 TIGR02927 SucB_Actino 2-oxoglu 30.0 20 0.00052 15.5 0.7 40 26-70 282-321 (607) 128 CHL00132 psaF photosystem I su 29.7 37 0.00095 14.1 2.1 24 1-24 1-24 (185) 129 TIGR00247 TIGR00247 conserved 29.4 38 0.00096 14.0 4.3 36 276-311 323-369 (373) 130 PRK09810 entericidin A; Provis 28.3 39 0.00098 14.0 1.9 21 1-21 2-22 (41) 131 PRK02998 prsA peptidylprolyl i 28.1 40 0.001 13.9 5.6 48 1-50 1-52 (283) 132 PRK02889 tolB translocation pr 27.8 40 0.001 13.9 3.5 39 1-39 1-42 (430) 133 pfam08139 LPAM_1 Prokaryotic m 27.8 37 0.00095 14.1 1.7 17 1-17 1-17 (26) 134 PRK08139 enoyl-CoA hydratase; 27.0 41 0.001 13.8 1.8 34 37-75 36-71 (265) 135 PRK10477 outer membrane lipopr 26.9 33 0.00084 14.4 1.3 29 1-29 1-29 (177) 136 PRK13513 putative outer membra 26.8 42 0.0011 13.8 3.1 38 2-39 6-49 (660) 137 PRK10082 putative DNA-binding 26.1 43 0.0011 13.7 15.9 57 22-86 97-154 (303) 138 PRK10760 murein hydrolase B; P 26.0 44 0.0011 13.7 4.0 51 1-51 1-69 (357) 139 PRK09967 putative outer membra 25.5 45 0.0011 13.6 2.3 20 162-181 81-100 (160) 140 TIGR01672 AphA HAD superfamily 25.5 45 0.0011 13.6 2.6 31 1-31 1-32 (248) 141 PRK09733 putative fimbrial pro 25.3 45 0.0011 13.6 3.6 33 1-34 2-34 (181) 142 PRK02515 psbU photosystem II c 25.2 45 0.0011 13.6 1.9 19 1-19 1-19 (144) 143 TIGR02747 TraV type IV conjuga 25.2 44 0.0011 13.7 1.7 20 1-20 2-22 (174) 144 TIGR02213 lolE_release lipopro 24.4 37 0.00095 14.1 1.2 29 247-275 98-126 (416) 145 PRK12696 flgH flagellar basal 23.8 40 0.001 13.9 1.3 16 1-16 2-17 (238) 146 cd08034 LARP_1_2 La RNA-bindin 23.6 49 0.0012 13.4 2.5 29 301-329 4-36 (73) 147 PRK06072 enoyl-CoA hydratase; 23.5 49 0.0012 13.4 2.8 40 37-86 18-59 (240) 148 pfam07172 GRP Glycine rich pro 23.1 35 0.0009 14.2 0.9 19 7-25 8-26 (91) 149 KOG3842 consensus 23.0 34 0.00086 14.3 0.8 85 77-174 118-206 (429) 150 PRK10260 hypothetical protein; 22.8 50 0.0013 13.3 2.3 25 1-25 1-25 (306) 151 PRK08223 hypothetical protein; 22.7 51 0.0013 13.3 7.8 84 37-125 80-168 (287) 152 PRK10159 outer membrane phosph 22.5 51 0.0013 13.3 3.2 32 1-35 1-39 (351) 153 PRK11482 putative DNA-binding 22.4 52 0.0013 13.3 10.7 93 24-134 64-159 (266) 154 PRK10632 putative DNA-binding 22.3 52 0.0013 13.3 10.3 81 22-121 88-169 (309) 155 TIGR00113 queA S-adenosylmethi 22.3 30 0.00077 14.5 0.4 17 166-182 66-85 (364) 156 PRK03002 prsA peptidylprolyl i 21.8 53 0.0013 13.2 5.7 46 1-46 1-50 (285) 157 pfam04710 Pellino Pellino. Pel 21.7 48 0.0012 13.4 1.4 84 79-175 107-194 (416) 158 cd08031 LARP_4_5_like La RNA-b 21.4 54 0.0014 13.1 2.5 29 301-329 4-36 (75) 159 PRK11023 hypothetical protein; 20.8 56 0.0014 13.1 1.8 19 1-19 1-19 (191) 160 PRK02944 OxaA-like protein pre 20.4 57 0.0014 13.0 2.7 41 1-41 1-46 (255) No 1 >COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=100.00 E-value=0 Score=381.03 Aligned_cols=268 Identities=23% Similarity=0.365 Sum_probs=227.6 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC Q ss_conf 37679998034258999999999998779807999815762057898852101335301213320247678767624878 Q gi|254780707|r 24 ARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS 103 (346) Q Consensus 24 a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~ 103 (346) .+.+|+++|||+++|++++|+++|++.||++++ +|+++|||+|+++++.+. +|||++||||+++|.+.|.+. .. T Consensus 41 ~~~~l~~~GSttv~p~~~~~a~~~~~~~~~~~v-~~q~~GSg~G~~~~~~~~----vDig~ss~p~~~~e~~~~~~~-~~ 114 (318) T COG0226 41 ASGSLTIAGSTTVAPLMEAWAEEFQKAYPNVKV-NVQAGGSGAGIKQALAGG----VDIGASSRPLKDSEKEADAKA-GK 114 (318) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEE-EEECCCCHHHHHHHHCCC----CCCCCCCCCCCCCHHHHHHHC-CC T ss_conf 543599836573899999999999987899478-763686618899875267----703135766663267998740-79 Q ss_pred CCEEEEEECCCCEEEECCCCC-CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 724666521541255416665-4568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 104 DIQEVTIGHDGILLVSDRDMV-SVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 104 ~~~~~~v~~d~i~i~~n~~~~-~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) ++++++++.|+|++++|.+++ .++||.++|++|| .|+|++|+|+++.+||.+|.+++|+++|||++.| T Consensus 115 ~l~~~pva~d~i~vi~N~~~~~~~~Lt~~~l~~If-----------~G~it~W~d~~~~~~n~~I~vv~R~~~SGT~~~F 183 (318) T COG0226 115 KLVEFPVAIDAIVVIVNLPNPDVLNLTKDQLADIF-----------SGKITNWNDVGGQLLNPGITVVGRSDGSGTTETF 183 (318) T ss_pred CCEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHH-----------HCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH T ss_conf 86697788777999975898541347999999997-----------0888755566865589985688478777769999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100111001 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL 262 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~ 262 (346) +++++. +... .+......++. ....+.+..+++.+.++|++|||++++|+..+...+.. T Consensus 184 ~~~l~~-~~~~------------------~~~g~~~~~~~--~~~~~~n~~v~~~v~~tp~aIGYv~~~y~~~n~~~~~~ 242 (318) T COG0226 184 TEYLLG-WKKK------------------VGAGKTVDWPA--AVGGKGNEGVVAAVSQTPGAIGYVGYAYAVQNNLKLAA 242 (318) T ss_pred HHHHHH-HHHC------------------CCCCCCCCCCC--EECCCCCHHHHHHHHCCCCCEEEEEEHHHHHCCCHHHH T ss_conf 999876-5320------------------34566544564--00368857889888539984599986796524305666 Q ss_pred CCCC------CCCCCHHHHCCCCC-CCEEEEEEEEECCCC-CCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHH Q ss_conf 3445------76789556027987-503678999707885-6688999999997498740522027755963489999 Q gi|254780707|r 263 VPID------GIVPSMGTIVSGLY-PISRPLLFYVKRQHF-NSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEE 332 (346) Q Consensus 263 ~~~~------~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~-~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~ 332 (346) +..+ .++|+.+++.+++| ||+|++|+|+++++. ...+++++|++|+++++++. ++.+.||||||++. T Consensus 243 ~~~~~~~~~~~v~p~~~~i~~~~y~Pi~~~~~~~v~~~~~~~~~~~~~~Fi~~~~~~~~~~---~~~~~Gyvplp~~~ 317 (318) T COG0226 243 LANKAGGVGPTVEPTAENIANGKYSPIVRPLFIYVNKNPKDTKAPAVKAFLDWALSPGGQQ---IVEEVGYVPLPDAV 317 (318) T ss_pred HHHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCE---EHHHCCEECCCCCC T ss_conf 4201577666656457775337735512578999827766665889999999996787600---15208816187244 No 2 >PRK10918 phosphate transporter subunit; Provisional Probab=100.00 E-value=0 Score=355.05 Aligned_cols=300 Identities=15% Similarity=0.173 Sum_probs=227.9 Q ss_pred CCHHHHHHHH--HHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC Q ss_conf 9248999999--99999983142013767999803425899999999999877980799981576205789885210133 Q gi|254780707|r 1 MRFFFVVLMC--FVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD 78 (346) Q Consensus 1 Mk~~~~~~~~--~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~ 78 (346) ||....+..+ +++|++.+. .+.++.+|+.+|||+++|+++.|+++|++.+ +.++ +|++.|||+|+++|++|. T Consensus 1 ~~~~~~~~~~~~~~~ls~~a~-~a~aa~~l~GaGaTf~~p~~~~w~~~~~~~~-g~~v-~Y~~~GSG~G~~~f~~g~--- 74 (346) T PRK10918 1 MKVMRTTVATVVAATLSMSAF-SAFAAASLTGAGATFPAPVYAKWADTYQKET-GNKV-NYQGIGSSGGVKQIIANT--- 74 (346) T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-CCEE-EECCCCCHHHHHHHHCCC--- T ss_conf 901488999999999988776-7876166124143349999999999999845-9868-982668789999997389--- Q ss_pred CCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 53012133202476787676248787246665215412554166654---568888888764102555553236730232 Q gi|254780707|r 79 TIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVS---VSLTVEDLYKALASYLIVDDKVVFNPLKKW 155 (346) Q Consensus 79 ~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~---~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W 155 (346) +|||+||+||+++|+++ ..+.++|++.++|++++|.++.. +.|+.+.|.+|| .|+|++| T Consensus 75 -vdFa~SD~pls~~~~~~------~~~~~~P~~~g~iav~yNlpgv~~~~L~L~~~~la~IF-----------~G~It~W 136 (346) T PRK10918 75 -VDFGASDAPLSDEKLAQ------EGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIY-----------LGKIKKW 136 (346) T ss_pred -CCEEECCCCCCHHHHHH------CCCCCCCEEECCEEEEEECCCCCCCEEEECHHHHHHHH-----------HCCCCCC T ss_conf -85664588889788833------68714885611279999778876750312899999998-----------4856767 Q ss_pred HHC-------CCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECC Q ss_conf 310-------0111224503544885423578999885134555654101111101366000134443102466402116 Q gi|254780707|r 156 SEI-------RPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVD 228 (346) Q Consensus 156 ~~~-------~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 228 (346) ||+ +..||+++|+++||+|+|||+++|++++....+.|... .+....+.+..+ + .. T Consensus 137 nDp~I~~lNPg~~LP~~~I~vv~RsD~SGTT~~FT~yLs~~s~~W~~~---------------~g~g~t~~wp~g-~-g~ 199 (346) T PRK10918 137 DDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNK---------------VGAGSTVNWPTG-L-GG 199 (346) T ss_pred CCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHC---------------CCCCCCCCCCCC-C-CC T ss_conf 876566308899899986399970798602999999998629133304---------------788864348877-6-88 Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC---CCCCCCHHHHC---------------------CCCCCCEE Q ss_conf 6236777631015321001332001100111001344---57678955602---------------------79875036 Q gi|254780707|r 229 GDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPI---DGIVPSMGTIV---------------------SGLYPISR 284 (346) Q Consensus 229 ~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~---~~v~p~~~~i~---------------------~g~YPl~r 284 (346) +.+..+.+.+.+++++|||++++|+..+......+.+ +.|.|+.+++. .++|||+. T Consensus 200 ~Gn~GVa~~V~~t~gsIGYve~aya~~~~l~~a~l~N~~G~~V~Pt~~s~~aA~~~~~~~~~~~~~l~~~~g~~aYPIv~ 279 (346) T PRK10918 200 KGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEESFSNAAKGADWSKTFAQDLTNQKGEDAWPITS 279 (346) T ss_pred CCCHHHHHHHHCCCCEEEEEEHHHHHHCCCCEEEEECCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 88538999884399806886578885479863788726897758787899999843775533331367898888455000 Q ss_pred EEEEEEECCC--CCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 7899970788--566889999999974987405220277559634899999999999960778 Q gi|254780707|r 285 PLLFYVKRQH--FNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKS 345 (346) Q Consensus 285 ~ly~yv~~~~--~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~~~~ 345 (346) ..|++++.+. .+..+.+++|++|+|+++++ .+.++||+|||+++++++|++++...+ T Consensus 280 ~Ty~lv~~~~~d~~~~~~v~~F~~~~l~~gq~----~a~~lgYvPLP~~v~~~v~aa~~t~~~ 338 (346) T PRK10918 280 TTFILVHKDQKKPEQGTEVLKFFDWAYKTGAK----QANDLDYASLPDSVVEQVRAAWKTNIK 338 (346) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCHHH----HHHHCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 01234335679988999999999999832144----466489702999999999999996360 No 3 >TIGR02136 ptsS_2 phosphate binding protein; InterPro: IPR011862 Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This entry separates members from the phosphate ABC transporter phosphate binding proteins described by IPR005673 from INTERPRO.; GO: 0006810 transport. Probab=99.92 E-value=4.5e-26 Score=163.86 Aligned_cols=258 Identities=26% Similarity=0.474 Sum_probs=213.7 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCE Q ss_conf 79998034258999999999998779807999815762057898852101335301213320247678767624878724 Q gi|254780707|r 27 RIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQ 106 (346) Q Consensus 27 ~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~ 106 (346) .+...||++++|++..|++.|++.+++..+ .++..||+.|+.+++.|. .|++.++|++.+.|...+.... .... T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~ 117 (308) T TIGR02136 44 TITAVGSTTVAPLAEAAAEEFQKLHPNVSV-TVQGAGSGTGIKALINGT----VDIGNSSRPIKDEEIAKLAQKG-IKLI 117 (308) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EECCCCCCCCHHHHHHHH----HHCCCCCCCCHHHHHHHHHHHC-CCCC T ss_conf 000122100123566766654321033311-111343221001221001----1001100000035665543201-1000 Q ss_pred EEEEECCCCEEEECCCC-CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHH Q ss_conf 66652154125541666-54568888888764102555553236730232310011122450354488542357899988 Q gi|254780707|r 107 EVTIGHDGILLVSDRDM-VSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKK 185 (346) Q Consensus 107 ~~~v~~d~i~i~~n~~~-~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~ 185 (346) ..+++.+++..++|..+ +...++..++..++. . ..+++++|.++++.+++.+|.++.|...|||+..|... T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (308) T TIGR02136 118 ELKVAVDGLAVIVNPKNVPVDDLTVEQLKKIYL-A-------AQGEITNWKEVGGALPNQPIVVVGRNAGSGTRATFEEE 189 (308) T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-H-------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 000111011111011112311001344433322-1-------01110111112343322211001233333210111233 Q ss_pred HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCC--CCCC Q ss_conf 51345556541011111013660001344431024664021166236777631015321001332001100111--0013 Q gi|254780707|r 186 VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADV--LKLV 263 (346) Q Consensus 186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~--~~~~ 263 (346) ++.......... ............+..++++++|.++.+...+... ...+ T Consensus 190 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (308) T TIGR02136 190 VLGKAKIAPGVN----------------------------TAQESNGAVVSSVSSNPGAIGYLGLGYVTDSKKKLKVVPL 241 (308) T ss_pred HHHHHHHHCCHH----------------------------CCCCCCCCEEEEECCCCCCCCHHCCHHHHCCCCCCCHHHH T ss_conf 320011100000----------------------------0013443112100234221000000000000000000000 Q ss_pred CCCC---CCCCHHHHCCCCCCCEEEEEEEEECCCCCC-CHHHHHHHHHHHCHHHCCCCCHHHHCCCCCC Q ss_conf 4457---678955602798750367899970788566-8899999999749874052202775596348 Q gi|254780707|r 264 PIDG---IVPSMGTIVSGLYPISRPLLFYVKRQHFNS-VLGLREYVSFSVSDEMMAPDSQLFQYGLIPI 328 (346) Q Consensus 264 ~~~~---v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~-~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPL 328 (346) ..++ +.|+.+++.++.|++.|++++|++..+... .+...+|+.+.++...+. ..+...||+|+ T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 308 (308) T TIGR02136 242 KVNGGKAVEPSKENIANGSYPLSRPLFMYVNGKPLKPLNPLVAEFIDFVLSDDTGE--RLVEELGYIPL 308 (308) T ss_pred HCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHH--HHHHCCCCCCC T ss_conf 00232211110112202321000001221000000000134444433210210000--11110012369 No 4 >COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=99.37 E-value=9.3e-10 Score=73.07 Aligned_cols=247 Identities=20% Similarity=0.257 Sum_probs=125.4 Q ss_pred CCHHHHHHHHHH--HHHHHHCCC--CCCCCEEEE-EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC Q ss_conf 924899999999--999983142--013767999-803425899999999999877980799981576205789885210 Q gi|254780707|r 1 MRFFFVVLMCFV--VLEVYCGTG--TFARNRIRI-AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGI 75 (346) Q Consensus 1 Mk~~~~~~~~~~--~l~~~~~~~--~~a~~~I~i-~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~ 75 (346) |+++..+++.++ ++.++|... ....++|++ +.+|...|+ +.+..+|+++| ++++ +++-+||+...+++.+|. T Consensus 1 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~VfAAaSL~~~l-~~i~~~F~~~~-~~~V-~~~f~gS~~l~~qIe~Ga 77 (258) T COG0725 1 GKKMKKILALLLLVLLALGCAAGSAAQEAATITVFAAASLTDAL-EEIAKQFEKET-GVKV-EVEFGGSGALARQIEQGA 77 (258) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHH-HHHHHHHHHHH-CCEE-EEEECCHHHHHHHHHCCC T ss_conf 94268899999999999986156544567409999815668999-99999999987-9879-999613899999997599 Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHCC-CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 13353012133202476787676248-78724666521541255416665456888888876410255555323673023 Q gi|254780707|r 76 GDDTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKK 154 (346) Q Consensus 76 ~~~~~dig~ssr~l~~~E~~~~~~~~-~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~ 154 (346) ..|+-.|...-.. ....+.+ ...-...+++..-+++++...++..... T Consensus 78 ---~~D~fiSa~~~~~---~~l~~~g~~~~~~~~~fa~n~lvl~~~~~~~~~~~~------------------------- 126 (258) T COG0725 78 ---PADLFISADDAYM---DKLEDKGLIYADSRIVFAGNRLVLAVPKGSKKKIES------------------------- 126 (258) T ss_pred ---CCCEEEECCHHHH---HHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCH------------------------- T ss_conf ---8687998888889---999866885667157742574899986887456512------------------------- Q ss_pred HHHCCCCCCCCCCEEECC-CCCCC--HHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCH Q ss_conf 231001112245035448-85423--578999885134555654101111101366000134443102466402116623 Q gi|254780707|r 155 WSEIRPDFPEVRIAIYVP-SGKHG--TREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDY 231 (346) Q Consensus 155 W~~~~~~lp~~~I~~~~r-~~~SG--T~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 231 (346) |.++.- .++..+.+-.| .+..| +.+.|+. ...+..... .+...++- T Consensus 127 ~~~l~~-~~~~~lai~~p~~~P~G~ya~~~l~~-----~g~~~~~~~-------------------------k~v~~~~v 175 (258) T COG0725 127 LEDLLE-RPDVRLAIGDPKTVPAGKYAKEALEL-----LGLWYTLKD-------------------------KLVLATNV 175 (258) T ss_pred HHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHH-----HCHHHHCCC-------------------------CEEECCCH T ss_conf 988730-87857996488769714999999997-----051453367-------------------------54653657 Q ss_pred HHHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 67776310153--2100133200110011100134457678955602798750367899970788566889999999974 Q gi|254780707|r 232 TETLARIEVNK--DVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346) Q Consensus 232 ~~~~~~v~~~~--~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346) .+....+.... .++-|.+...... ..+.+.+-.+..-+ |+.-|.-++.+. ...+..++|++|++ T Consensus 176 ~~~l~~V~~G~ad~g~vy~sd~~~~~--------~~~~~~~~~~~~~~---Pi~y~iav~~~~---~~~~~A~~f~~fl~ 241 (258) T COG0725 176 RQALAYVETGEADAGFVYVSDALLSK--------KVKIVGVFPEDLHS---PIVYPIAVLKNA---KNPELAKEFVDFLL 241 (258) T ss_pred HHHHHHHHCCCCCEEEEEEEHHHHCC--------CCEEEEECCCCCCC---CEEEEEEEECCC---CCHHHHHHHHHHHH T ss_conf 98999986378777999976334067--------76089973566689---716789997388---98599999999971 Q ss_pred CHHHCCCCCHHHHCCCCCCC Q ss_conf 98740522027755963489 Q gi|254780707|r 310 SDEMMAPDSQLFQYGLIPIS 329 (346) Q Consensus 310 s~~~~~~~~~~~~~GyvPLp 329 (346) |+++|. ++++.||-|+. T Consensus 242 s~~a~~---il~~~Gf~~~~ 258 (258) T COG0725 242 SPEAQE---ILEKYGFEPLT 258 (258) T ss_pred CHHHHH---HHHHCCCCCCC T ss_conf 877799---99984998899 No 5 >PRK10677 modA molybdate transporter periplasmic protein; Provisional Probab=99.27 E-value=1.7e-09 Score=71.66 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=130.7 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC Q ss_conf 24899999999999983142013767999803425899999999999877980799981576205789885210133530 Q gi|254780707|r 2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTID 81 (346) Q Consensus 2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~d 81 (346) |+++.+++++.++.+.+.+.....++|++.-++++.+.|+.+++.|+++| ++++ .+.-+|||.=.+|+..|. -+| T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~V~aAAsL~~~~~ei~~~Fek~~-g~~v-~~~fgsSg~L~~QI~~GA---p~D 77 (257) T PRK10677 3 RKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEK-GVDV-VSSFASSSTLARQIEAGA---PAD 77 (257) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH-CCEE-EEEECCHHHHHHHHHCCC---CCC T ss_conf 28999999999987235533256885999992576899999999998841-9849-999664899999998289---965 Q ss_pred EE-ECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC Q ss_conf 12-13320247678767624878724666521541255416665456888888876410255555323673023231001 Q gi|254780707|r 82 IV-NSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP 160 (346) Q Consensus 82 ig-~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~ 160 (346) += .+|...-+ .+.+ ++.+..-....++..-+++++.+.++...+.. .+..+|.++- T Consensus 78 vF~sAd~~~~~-~l~~--~~~i~~~~~~~~a~n~lvli~pk~~~~~~~~i-------------------~~~~d~~~ll- 134 (257) T PRK10677 78 LFISADQKWMD-YAVD--KKAIDTATRQTLLGNSLVVVAPKASEQKDFTI-------------------DKKTDWTSLL- 134 (257) T ss_pred EEEECCHHHHH-HHHH--CCCCCCCCEEEEECCEEEEEEECCCCCCCCCC-------------------CCCCCHHHHC- T ss_conf 89978757789-9986--77856776456214749999846877786443-------------------4332377742- Q ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCC Q ss_conf 11224503544885423578999885134555654101111101366000134443102466402116623677763101 Q gi|254780707|r 161 DFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240 (346) Q Consensus 161 ~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~ 240 (346) ++..|.+-.|. +-........++.+...+..-. ..+...++-....+.+.. T Consensus 135 --~~~riaia~P~--~aP~G~ya~~~L~~~gl~~~l~-------------------------~klv~~~nV~~~l~~v~~ 185 (257) T PRK10677 135 --NGGRLAVGDPD--HVPAGIYAKEALQKLGAWDTLS-------------------------PKLAPAEDVRGALALVER 185 (257) T ss_pred --CCCCEEEECCC--CCCCHHHHHHHHHHCCCHHHHC-------------------------CCEEECCCHHHHHHHHHC T ss_conf --58808985888--8865799999999767665506-------------------------541325769999999982 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCH Q ss_conf 5321001332001100111001344576789556027987-503678999707885668899999999749874052202 Q gi|254780707|r 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQ 319 (346) Q Consensus 241 ~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~ 319 (346) ..--+|++..+-.... ..+..+ .+.|.. .| |+..|.-+ ++.. ..+.+++|++|++|+++|. + T Consensus 186 G~adaG~Vy~Sda~~~-~~~~~~---~~~p~~------~~~pi~y~~ai-~~~~---~~~~a~~F~~fl~S~~a~~---I 248 (257) T PRK10677 186 NEAPLGIVYGSDAVAS-KGVKVV---ATFPED------SHKKVEYPMAI-VEGH---NNATVSAFYDYLKGPQAAE---I 248 (257) T ss_pred CCCCEEEEECCHHHCC-CCCEEE---EECCHH------HCCCCEEEEEE-ECCC---CCHHHHHHHHHHCCHHHHH---H T ss_conf 9987899970002226-886499---987745------38961455899-7599---9999999999977999999---9 Q ss_pred HHHCCCC Q ss_conf 7755963 Q gi|254780707|r 320 LFQYGLI 326 (346) Q Consensus 320 ~~~~Gyv 326 (346) +++.||. T Consensus 249 l~~~GFt 255 (257) T PRK10677 249 FKRYGFT 255 (257) T ss_pred HHHHCCC T ss_conf 9982983 No 6 >PRK04168 hypothetical protein; Provisional Probab=99.24 E-value=1e-08 Score=67.29 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=71.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC Q ss_conf 924899999999999983142---01376799980342589999999999987798079998157620578988521013 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG---TFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGD 77 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~---~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~ 77 (346) ||+++.++++++++.++.|.+ +....+|++-=+.++..-+..+.+.|+++||++++ ..+..||....+++.++. T Consensus 5 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~Vf~AGSL~~pf~ei~~~Fe~~~p~v~v-~~e~~GS~~~ar~Ite~g-- 81 (336) T PRK04168 5 RRKIVIVILLLLALVFLGCVNTSEAEPPGKLKIFHAGSLSVPFEEYEKEFEAYYPNVDV-QREAGGSVACVRKITELG-- 81 (336) T ss_pred CEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHHCC-- T ss_conf 32203799999999970555777778861599997552589999999999987899659-998473899999999579-- Q ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 35301213320247678767624878724666521541255416665 Q gi|254780707|r 78 DTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMV 124 (346) Q Consensus 78 ~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346) ..+|+-+|-.+ +- +.+..... ..-+.+.++...++++++.+.. T Consensus 82 ~~aDVfaSAD~-~~--i~~ll~p~-~adw~v~FA~N~lViayt~~Sk 124 (336) T PRK04168 82 KPADILASADY-TL--IPKMMIPE-YADWYVMFATNEIVLAYTDKSK 124 (336) T ss_pred CCCCEEEECCH-HH--HHHHHCCC-CCCCEEEECCCEEEEEECCCCC T ss_conf 99888998985-78--78874644-3341012115538999768882 No 7 >TIGR00975 3a0107s03 phosphate ABC transporter, phosphate-binding protein PstS; InterPro: IPR005673 This family represents a sub-group of the phosphate-binding periplasmic proteins, one of the bacterial proteins required for binding-protein-mediated phosphate transport. The accumulation of protein is enhanced under phosphate starvation. ; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport. Probab=99.21 E-value=1.6e-11 Score=82.82 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=175.4 Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEE Q ss_conf 99803425899999999999877980799981576205789885210133530121332024767876762487872466 Q gi|254780707|r 29 RIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEV 108 (346) Q Consensus 29 ~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~ 108 (346) ...|++...|.+..|...|.+.++......++..||+.|+.++..+. ++++.++.++++ +.......+ ..... T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 74 (324) T TIGR00975 2 TGAGSTFPAPLYSKWFADYSKSNPAKVTVNYQGIGSGAGIAQFLAGT----VDFGASDAPLSE-EAAALASAG--GLLQL 74 (324) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC----CCCCCCCHHHHH-HHHHHHHCC--CCCCC T ss_conf 65421012233332222222101232110112233200122222000----001111002234-455542011--10001 Q ss_pred EEECCCCEEEECCCCCCC---CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHC-------CCC-CCCCCCEEECCCCCCC Q ss_conf 652154125541666545---68888888764102555553236730232310-------011-1224503544885423 Q gi|254780707|r 109 TIGHDGILLVSDRDMVSV---SLTVEDLYKALASYLIVDDKVVFNPLKKWSEI-------RPD-FPEVRIAIYVPSGKHG 177 (346) Q Consensus 109 ~v~~d~i~i~~n~~~~~~---~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~-------~~~-lp~~~I~~~~r~~~SG 177 (346) +.....++..++...... .+....+. .++.++++.|+++ ... +|..+|.+.+|++.|+ T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (324) T TIGR00975 75 PTVIGAVVVAYNLPGVSKGELKLDGAVLA-----------KIFLGKIKTWNDPAIAALNPGVKDLPGTAITVVHRSDGSG 143 (324) T ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCHHH-----------HHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCCC T ss_conf 00000000000112222110122320010-----------0100110012311233210110112321110000111223 Q ss_pred HHHHHHHHHCCCCCCCC---CCHHHHHHCCC---CCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC Q ss_conf 57899988513455565---41011111013---6600013444310246640211662367776310153210013320 Q gi|254780707|r 178 TREVLEKKVLQEGCVRS---RNFSKMRDMFK---YNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLS 251 (346) Q Consensus 178 T~~~F~~~v~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~ 251 (346) ++..|..+.......+. .......+... .......+.. ..+...++.++|.... T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 203 (324) T TIGR00975 144 TTFVFTNYLSKVSPEWKSKVGAGKTVNWPAGDGAVGGKGNDGVS--------------------AAVKQTPGAIGYVELS 203 (324) T ss_pred CCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE--------------------EECCCCCCCCCHHHHH T ss_conf 20000001100010000112233212233322111223333210--------------------0000122210000112 Q ss_pred HHHHCCCCCCCCC----------------------------CCCCCCCHHHHCCCCCCCEEEEEEEEEC--CC--CCCCH Q ss_conf 0110011100134----------------------------4576789556027987503678999707--88--56688 Q gi|254780707|r 252 FYKNNADVLKLVP----------------------------IDGIVPSMGTIVSGLYPISRPLLFYVKR--QH--FNSVL 299 (346) Q Consensus 252 ~~~~~~~~~~~~~----------------------------~~~v~p~~~~i~~g~YPl~r~ly~yv~~--~~--~~~~~ 299 (346) +...+......+. .+.............||+....+..+.. .. ..... T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (324) T TIGR00975 204 YAKLNKLSFAALKNSAGKFVLPDAESIAAAAAGAKISGPELKNDLLSLTDAPGAGAYPIVAATYLIVYKKQKDLRPAKAK 283 (324) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH T ss_conf 23332111222100023211111002234443321100011111000012334321100012333322101220134455 Q ss_pred HHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHC Q ss_conf 9999999974987405220277559634899999999999960 Q gi|254780707|r 300 GLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAV 342 (346) Q Consensus 300 ~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~ 342 (346) ..+.|+.|.+...++ .....+|+++|.......+..+.. T Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 322 (324) T TIGR00975 284 ALKAFLTWALTNGQK----GADDLGYIPLPPSVVKRVRTAVNT 322 (324) T ss_pred HHHHHHHHHHCCCCH----HHCCCCCCCCCHHHHHHHHHHHHC T ss_conf 555443321101000----100112111211233332212100 No 8 >TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain. Probab=99.13 E-value=8.1e-09 Score=67.82 Aligned_cols=276 Identities=10% Similarity=0.055 Sum_probs=132.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH----HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCE Q ss_conf 99999999998314201376799980342589----99999999998779807999815762057898852101335301 Q gi|254780707|r 7 VLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP----YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDI 82 (346) Q Consensus 7 ~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P----~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~di 82 (346) +..+..++....+.++.|+.++.+-.|..+.+ +++.+...|.+++ |+++. +...|||.=+.++..-..+-+.|+ T Consensus 17 ~~~~~~~~~~~~~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~t-GikV~-~v~~~sge~laRl~aEk~nPqaDV 94 (367) T TIGR03227 17 LAAGAAALLQGAAAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAE-GIKVN-IVEAGGGEVVERAAKEKGNPKADV 94 (367) T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCEEE-EEECCHHHHHHHHHHCCCCCCCEE T ss_conf 9999999986423555458659999646643444346888768888866-98389-998977999999995227997209 Q ss_pred EECCCCCCHHHHHH--HHH------C------CCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 21332024767876--762------4------878724666521541255416665456888888876410255555323 Q gi|254780707|r 83 VNSSRKITQNELDE--CKK------H------GVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVV 148 (346) Q Consensus 83 g~ssr~l~~~E~~~--~~~------~------~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~ 148 (346) .....+.-.+-.+. +.. . ...+-.-.++..+.++++||.+.. T Consensus 95 v~~~d~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~------------------------ 150 (367) T TIGR03227 95 IVTAPPFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLL------------------------ 150 (367) T ss_pred EEECCHHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHH------------------------ T ss_conf 99785799999978895627896645577766377983898855579999985770------------------------ Q ss_pred CCCHHHHHHCCCCCCCCCCEEECCCC-CCCHHHHHH-HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEE Q ss_conf 67302323100111224503544885-423578999-8851345556541011111013660001344431024664021 Q gi|254780707|r 149 FNPLKKWSEIRPDFPEVRIAIYVPSG-KHGTREVLE-KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIE 226 (346) Q Consensus 149 ~g~i~~W~~~~~~lp~~~I~~~~r~~-~SGT~~~F~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (346) ..+.+.|+|+-. |.-+-++..+++ .|++-..+. ..+..-+.. .......... .. +.+. T Consensus 151 k~~PkSW~DL~d--P~ykgkI~~~dP~tS~~g~~~l~~~~~~~G~e-D~a~~~~~~L-----~~------------N~~~ 210 (367) T TIGR03227 151 KSAPASFADLLD--ADFKGKLAYSNPAQAADGMAVIILAFALFGSE-DAAFAYLAKL-----EA------------NNKF 210 (367) T ss_pred CCCCCCHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHH-----HH------------CCCE T ss_conf 579988998728--53378289528776617999999999970985-3889999988-----74------------4867 Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE----EEECCCCCCCHHHH Q ss_conf 16623677763101532100133200110011100134457678955602798750367899----97078856688999 Q gi|254780707|r 227 VDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLF----YVKRQHFNSVLGLR 302 (346) Q Consensus 227 ~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~----yv~~~~~~~~~~~~ 302 (346) +......+...+......++...+.+..... .-...+++.+.|.... .+|....... ++++ ....+..+ T Consensus 211 ~~~s~~~~~~~~~~GE~~va~g~~~~~~~~~-~~~g~~v~~v~P~~~~----g~~~g~~~i~~~i~ivKg--a~n~e~Ak 283 (367) T TIGR03227 211 HSAGTGKLNALLNKGEIAVANGDLQMDLADA-EHGGLNIKIFFPAADA----GEPPSAFAIPYAIGLVKG--APNQDAGK 283 (367) T ss_pred ECCCCHHHHHHHHCCCEEEEEEECCHHHHHH-HHCCCCCEEEEECCCC----CCCCCEEEEEEHHHHHCC--CCCHHHHH T ss_conf 2478179999985786789952020436777-6279970289546777----888734875220346449--99989999 Q ss_pred HHHHHHHCHHHCCCCCHHHHCCC-------CCCCHHHHHHHHH Q ss_conf 99999749874052202775596-------3489999999999 Q gi|254780707|r 303 EYVSFSVSDEMMAPDSQLFQYGL-------IPISNEERKSVRD 338 (346) Q Consensus 303 ~Fl~~~ls~~~~~~~~~~~~~Gy-------vPLp~~~~~~~~~ 338 (346) +|++|+||.++|. .+.+.+| |+||++..+.... T Consensus 284 kfidflLS~e~Q~---~~a~~~~~~Pv~~~v~l~~~~~~~~~~ 323 (367) T TIGR03227 284 KLIDFLLSADAQA---KVPDLSFGIPGRSDVPLSDEHGEAAKA 323 (367) T ss_pred HHHHHHCCHHHHH---HHHHHCCCCCCCCCCCCCHHHHHHCCC T ss_conf 9999972999999---999860167677887698355542213 No 9 >TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Probab=99.04 E-value=5.2e-08 Score=63.34 Aligned_cols=261 Identities=13% Similarity=0.043 Sum_probs=120.2 Q ss_pred HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHH Q ss_conf 99983142013767999803425899999999999877980799981576205789885210133530121332024767 Q gi|254780707|r 14 LEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNE 93 (346) Q Consensus 14 l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E 93 (346) ..+++++++.+.+.|++--|. ...++..+.+.|+++|||++|. +...+||.-+..+..-..+.+.|+.-......-.+ T Consensus 10 ~~~~~a~aa~~~~~l~VYss~-~~~~~~~i~~~Fek~~tgIkV~-~v~~~tgel~~rl~aEk~~p~aDV~~g~~~~~~~~ 87 (334) T TIGR03261 10 SLFFSACNSKANTELTVYTAI-EDELIAKYKDAFEKVNPDIKIN-WVRDSTGIITAKLLAEKNNPQADVVWGLAASSLAL 87 (334) T ss_pred HHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHH T ss_conf 999983103029959999699-8889999999999777994899-99897299999999645799865998456578999 Q ss_pred H--------------HHHHHCCCC---CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 8--------------767624878---72466652154125541666545688888887641025555532367302323 Q gi|254780707|r 94 L--------------DECKKHGVS---DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWS 156 (346) Q Consensus 94 ~--------------~~~~~~~~~---~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~ 156 (346) + +........ ...-+.+.....++++|.+.... --.-..+.|. T Consensus 88 ~~~~gll~~y~~~~~~~l~~~~~d~~~~~~~~g~~~~~~~i~yN~~~~~~--------------------~~~p~P~sw~ 147 (334) T TIGR03261 88 LDKEGMLKPYKPKGLDALNPKFRDAKNPPHWVGMDAWMAAICFNTVEAKK--------------------KGLPKPTSWE 147 (334) T ss_pred HHHCCCCCCCCCCCHHHCCHHHCCCCCCCEEEEEEEEEEEEEEEHHHCCC--------------------CCCCCCCCHH T ss_conf 88604315777530544788652978885168875246789974444042--------------------5899999999 Q ss_pred HCCCCCCCCCCEEECC-CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHH Q ss_conf 1001112245035448-854235789998851345556541011111013660001344431024664021166236777 Q gi|254780707|r 157 EIRPDFPEVRIAIYVP-SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETL 235 (346) Q Consensus 157 ~~~~~lp~~~I~~~~r-~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 235 (346) |+-. |.-+=++..+ +..|||...|...++...... ..+..... ...+ ...+........ T Consensus 148 DL~d--p~ykg~i~~~~p~~sg~~~~~l~~~~~~~G~d----~g~~~l~~--l~~N------------~~~~~~~~~~~~ 207 (334) T TIGR03261 148 DLTK--PEYKGHIVMPNPASSGTGFLDVSAWLQMMGED----KGWDYMDK--LHKN------------IAVYTHSGSKPC 207 (334) T ss_pred HHCC--HHHCCEEECCCCCCCHHHHHHHHHHHHHHCHH----HHHHHHHH--HHHH------------HCCCCCCCCHHH T ss_conf 9709--47489587348886338999999999973528----89999999--9863------------241677763888 Q ss_pred HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCC Q ss_conf 63101532100133200110011100134457678955602798750367899970788566889999999974987405 Q gi|254780707|r 236 ARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMA 315 (346) Q Consensus 236 ~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~ 315 (346) ..+......||..-..... ...-...++..+.|. +|.+-.....- +++.. ...++.++|++|+||+++|. T Consensus 208 ~~v~~Ge~~ig~~~~~~~~--~~~~~g~pv~~v~P~-----eG~~~~~~~~~-Ivk~a--~n~~~Ak~FidfllS~e~Q~ 277 (334) T TIGR03261 208 KLAGMGEFPIGISMAYRAL--KEKKKGAPIDVVFPK-----EGLGWDIEATA-IIKGS--KNNDAAKKLVDWSISDEAME 277 (334) T ss_pred HHHHCCCEEEEEEECCHHH--HHHHCCCCEEEEECC-----CCCEEEEEEEE-EECCC--CCHHHHHHHHHHHCCHHHHH T ss_conf 9986598579997354578--876438973389458-----98478773588-88799--89899999999976999999 Q ss_pred CCCHHHHCCCCCCC Q ss_conf 22027755963489 Q gi|254780707|r 316 PDSQLFQYGLIPIS 329 (346) Q Consensus 316 ~~~~~~~~GyvPLp 329 (346) .+.+..++|+. T Consensus 278 ---~~a~~~~~p~~ 288 (334) T TIGR03261 278 ---LYAKNYAVVAT 288 (334) T ss_pred ---HHHHCCEECCC T ss_conf ---99964903468 No 10 >PRK10852 thiosulfate transporter subunit; Provisional Probab=98.85 E-value=3e-07 Score=59.14 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=121.5 Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH----HHHCCCCEEEEEEC-CCCHHHHHHHHHHCCCCCCCEEE Q ss_conf 99999998314201376799980342589999999999----98779807999815-76205789885210133530121 Q gi|254780707|r 10 CFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF----SEYFPEFKTPFVES-GGSSVGLKEFCRGIGDDTIDIVN 84 (346) Q Consensus 10 ~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y----~~~~~~~~~~~~~~-~GSg~Gi~~~~~G~~~~~~dig~ 84 (346) +.+++++++.+.+.+.+-++.+ -+....+++..-..| ++++++..+.+-|+ +|||.=-+.+++|...+.+.++. T Consensus 11 ~~~~~~~~~~g~a~~~~LlnVS-Yd~tRely~~~n~~F~~~Wk~~~~g~~V~i~qShGGSg~QARaVi~GL~ADVVtlal 89 (338) T PRK10852 11 LALVASLLLAGHAQATELLNSS-YDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQ 89 (338) T ss_pred HHHHHHHHHCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 8999999973787772688513-054799999998999999997568961899854787605789984787544687525 Q ss_pred CCCC--------CCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 3320--------24767876762487872466652154125541666545688888887641025555532367302323 Q gi|254780707|r 85 SSRK--------ITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWS 156 (346) Q Consensus 85 ssr~--------l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~ 156 (346) .+.- |-+..+++...+ .-..-...+++++.+.||. .|+.|. T Consensus 90 ~~Did~l~~~g~LI~~dW~~~lP~------ns~pytStivFlVRkGNPK-------------------------~IkdW~ 138 (338) T PRK10852 90 VTDVQILHDKGKLIPADWQSRLPN------NSSPFYSTMGFLVRKGNPK-------------------------NIHDWN 138 (338) T ss_pred CCCHHHHHHCCCCCCCCHHHHCCC------CCCCEEEEEEEEEECCCCC-------------------------CCCCHH T ss_conf 432488986278678054653899------9964466799998079956-------------------------687757 Q ss_pred HCCCCCCCCCCEEECCCCC--CCHHHHHHH-H--HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCH Q ss_conf 1001112245035448854--235789998-8--5134555654101111101366000134443102466402116623 Q gi|254780707|r 157 EIRPDFPEVRIAIYVPSGK--HGTREVLEK-K--VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDY 231 (346) Q Consensus 157 ~~~~~lp~~~I~~~~r~~~--SGT~~~F~~-~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 231 (346) |+-. | .+.++.|++. .|.+-+|.. + +..... ++. .+....+..-.++-. +-..+.- T Consensus 139 DL~k--~--gV~VItPNPKTSGgaRwnyLAAwg~a~~~~g---g~e----------~~a~~fv~~l~~NVp--Vld~gaR 199 (338) T PRK10852 139 DLVR--S--DVKLIFPNPKTSGNARYTYLAAWGAADKADG---GDK----------AKTEQFMTQFLKNVE--VFDTGGR 199 (338) T ss_pred HHCC--C--CCEEECCCCCCCCCHHHHHHHHHHHHHHHCC---CCH----------HHHHHHHHHHHHCCC--CCCCCCH T ss_conf 7464--8--9789757998884076999999999998649---998----------999999999983685--1589716 Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE--------EEEE--CCCCCCCHHH Q ss_conf 67776310153210013320011001110013445767895560279875036789--------9970--7885668899 Q gi|254780707|r 232 TETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLL--------FYVK--RQHFNSVLGL 301 (346) Q Consensus 232 ~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly--------~yv~--~~~~~~~~~~ 301 (346) .+...- ....+|-+=+.|..+.....+.. ..+.|.++-|-. -.|. .+..++.+.. T Consensus 200 ~AT~tF---~~rg~GDVLl~~ENEa~l~~~~~------------g~~~~eiV~Ps~sIlae~pVAvVDk~vdk~GTr~vA 264 (338) T PRK10852 200 GATTTF---AERGLGDVLISFESEVNNIRKQY------------EAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAA 264 (338) T ss_pred HHHHHH---HHCCCCCEEEEHHHHHHHHHHHH------------CCCCCEEECCCCCEEECCCEEEEEECCCCCCCHHHH T ss_conf 788999---87386756752167899999960------------899714988997566069748986012345889999 Q ss_pred HHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 9999997498740522027755963489999999999996 Q gi|254780707|r 302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341 (346) Q Consensus 302 ~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~ 341 (346) ++||+|..|+++|. ++.++||=|..+++.++..+.+. T Consensus 265 ~AyL~yLyS~eaQ~---i~Ak~~yRP~~~~v~~~~~~~FP 301 (338) T PRK10852 265 KAYLNWLYSPQAQT---IITDYYYRVNNPEVMDKLKDKFP 301 (338) T ss_pred HHHHHHHCCHHHHH---HHHHHCCCCCCHHHHHHHHCCCC T ss_conf 99999865989999---99980899899789877645499 No 11 >PRK10752 sulfate transporter subunit; Provisional Probab=98.78 E-value=3.9e-07 Score=58.47 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=37.8 Q ss_pred CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHC Q ss_conf 88566889999999974987405220277559634899999999999960 Q gi|254780707|r 293 QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAV 342 (346) Q Consensus 293 ~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~~ 342 (346) +..++.+..++||+|..|+++|. ++.++||=|..+++.++..+.+.. T Consensus 250 dk~GTr~~A~ayl~fLys~eaQ~---i~Ak~~yRP~~~~v~~~~~~~FP~ 296 (329) T PRK10752 250 EKKGTREVAEAYLKYLYSPEGQE---IAAKNYYRPRDAEVAKKYENAFPK 296 (329) T ss_pred CCCCCHHHHHHHHHHHCCHHHHH---HHHHHCCCCCCHHHHHHHHCCCCC T ss_conf 66688999999999865979999---999808898997898876543998 No 12 >COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=98.62 E-value=3.6e-06 Score=53.13 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=117.5 Q ss_pred CEEEEEECCHHHHHHHHHHHHH----HHHCCCCEEEEEE-CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC Q ss_conf 6799980342589999999999----9877980799981-5762057898852101335301213320247678767624 Q gi|254780707|r 26 NRIRIAGSSTLFPYSKIIAENF----SEYFPEFKTPFVE-SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH 100 (346) Q Consensus 26 ~~I~i~GSst~~P~~~~~a~~y----~~~~~~~~~~~~~-~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~ 100 (346) .+|...-=.-.-++++..-..| +.++.+. +.+.+ -+|||.=-+.+++|...+.+.++.++.- +.+++.... T Consensus 38 ~tLlnVSYd~tre~y~~~n~aF~~~WkaetG~~-Vti~qShGGSgkQaRsViDGl~ADVVtlal~~Di---d~i~~~g~l 113 (348) T COG1613 38 TTLLNVSYDPTRELYKEYNPAFAKYWKAETGET-VTIQQSHGGSGKQARSVIDGLEADVVTLALAYDI---DAIAKAGGL 113 (348) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHHHCCCCCCCEEEEEHHHHH---HHHHHHCCC T ss_conf 258885215658889998899999988731983-5999657876203576606753324664113118---999972687 Q ss_pred CCCC----CE--EEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCC Q ss_conf 8787----24--66652154125541666545688888887641025555532367302323100111224503544885 Q gi|254780707|r 101 GVSD----IQ--EVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSG 174 (346) Q Consensus 101 ~~~~----~~--~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~ 174 (346) ..++ +. .+| -...|++++.+.||. .|..|+|+-. ..+.++.|++ T Consensus 114 i~~dW~~rlp~ns~P-ytStivFlVRkGNPK-------------------------~I~DW~DL~k----~gV~VItpNP 163 (348) T COG1613 114 IDKDWQKRLPNNSAP-YTSTIVFLVRKGNPK-------------------------QIRDWDDLVK----PGVQVITPNP 163 (348) T ss_pred CCCCHHHHCCCCCCC-CCCEEEEEEECCCCC-------------------------CCCCHHHHCC----CCCEEECCCC T ss_conf 894657648699877-330699999369965-------------------------5675577465----8867976899 Q ss_pred CC--CHHHHHHH---HHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCC Q ss_conf 42--35789998---85134555654101111101366000134443102466402116623677763101532100133 Q gi|254780707|r 175 KH--GTREVLEK---KVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVG 249 (346) Q Consensus 175 ~S--GT~~~F~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~ 249 (346) .+ |.+-+|.. +.+.. +. ++. .+....+..-..+.+ +-..+.-.+... =....||-+- T Consensus 164 KTSGgARWN~Laawa~a~~~-~~--gde----------aka~~fV~~L~~nvp--vld~gaRgAT~t---F~qrgiGDVL 225 (348) T COG1613 164 KTSGGARWNYLAAWAYALKT-NG--GDE----------AKAKDFVGKLYKNVP--VLDTGARGATTT---FVQRGIGDVL 225 (348) T ss_pred CCCCCHHHHHHHHHHHHHHC-CC--CCH----------HHHHHHHHHHHHCCC--CCCCCCCHHHHH---HHHCCCCCEE T ss_conf 88765227889998998714-79--988----------999999999984683--245885212578---8863866478 Q ss_pred CCHHHHCCCCCCC---CCCCCCCCCHHHHCCCCCCCEEEEEEEE--ECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCC Q ss_conf 2001100111001---3445767895560279875036789997--0788566889999999974987405220277559 Q gi|254780707|r 250 LSFYKNNADVLKL---VPIDGIVPSMGTIVSGLYPISRPLLFYV--KRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYG 324 (346) Q Consensus 250 ~~~~~~~~~~~~~---~~~~~v~p~~~~i~~g~YPl~r~ly~yv--~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~G 324 (346) ++|..+....... -..+-|.|+ .+|.. .=|++ .| +-+..++.+...+|++|..|+++|. +..+++ T Consensus 226 i~wENEA~la~~e~g~~~feiV~Ps-~si~a-EpPVA-----VVd~~vdkkgtr~vAeAyl~yLys~~gQ~---i~Ak~~ 295 (348) T COG1613 226 IAWENEALLALNELGGDKFEIVTPS-VSILA-EPPVA-----VVDKNVDKKGTRKVAEAYLKYLYSPEGQE---IAAKHY 295 (348) T ss_pred EEECHHHHHHHHHHCCCCCCEECCC-EEEEE-CCCEE-----EEECCCCCCCCHHHHHHHHHHHCCHHHHH---HHHHHC T ss_conf 8724188887997468876687686-02660-69747-----87511233356899999998755838889---999827 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 63489999999999996 Q gi|254780707|r 325 LIPISNEERKSVRDSIA 341 (346) Q Consensus 325 yvPLp~~~~~~~~~~~~ 341 (346) |=|..+++.++....+- T Consensus 296 yRP~~p~v~a~~~~~FP 312 (348) T COG1613 296 YRPRDPEVAAKFADQFP 312 (348) T ss_pred CCCCCHHHHHHHHHHCC T ss_conf 78898788877786489 No 13 >CHL00180 rbcR LysR transcriptional regulator; Provisional Probab=98.43 E-value=1.8e-05 Score=49.20 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=124.2 Q ss_pred CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 37679998034258-99999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ...+|+|+.+.++. .++..+...|.+.||++.+. +....+..-++.+.+|. +|||.......+. .. T Consensus 93 ~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~-~~------- 159 (307) T CHL00180 93 QGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQ-LQVHSTRRIAWSVANGQ----IDLAIIGGEVPTE-LK------- 159 (307) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCC-CC------- T ss_conf 25860101040666664358899999988899727-89779999999998798----0099975778866-67------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) ..+...++..+.++++++++.|... .+...|.|+. + ...+.+..+++++..+ T Consensus 160 ~~l~~~~l~~~~~~lv~~~~hpla~----------------------~~~v~~~dL~----~--~~~i~~~~~~~~~~~~ 211 (307) T CHL00180 160 DNLQVTPYAEDELALILPKSHPFAK----------------------LKKIQKEDLY----R--LRFIALDSQSTIRKVI 211 (307) T ss_pred CCEEEEEEECCCEEEEECCCCHHHC----------------------CCCCCHHHHH----C--CCEEEECCCCCHHHHH T ss_conf 8549999432427999738980223----------------------9999999981----7--9848717999689999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CCC Q ss_conf 988513455565410111110136600013444310246640211662367776310153210013320011001--110 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DVL 260 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~~ 260 (346) .+.+...+-.... -......++...+ ........+|++++...+.... ..+ T Consensus 212 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l-~~~v~~g~Gia~lP~~~v~~~~~~g~l 264 (307) T CHL00180 212 DNILIQNGIDSSR--------------------------FKIEMELNSIEAI-KNAVQSGLGAAFVSVSAIEKELELGTL 264 (307) T ss_pred HHHHHHCCCCCCC--------------------------CEEEEEECCHHHH-HHHHHHCCEEEECCHHHHHHHHHCCCE T ss_conf 9999976998455--------------------------4279997809999-999993994998259999989877988 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf 013445767895560279875036789997078856688999999997498 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346) ..++. ...++.|.+|++.++ +....++++.|++|+++- T Consensus 265 ~~~~~------------~~~~~~r~i~lv~~~-~r~~s~a~~~F~~~l~~~ 302 (307) T CHL00180 265 HWAKI------------ENITIKRTLSIITNP-NRYRSKAAETFSKEILTL 302 (307) T ss_pred EEEEC------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHHH T ss_conf 99978------------999850499999979-597799999999999985 No 14 >PRK11242 DNA-binding transcriptional regulator CynR; Provisional Probab=98.40 E-value=4.5e-05 Score=46.97 Aligned_cols=201 Identities=12% Similarity=0.146 Sum_probs=117.1 Q ss_pred CCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 137679998034258-9999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ..+++|+|+-+.+.. -++..+...|.+.||++++. +....+..-.+.+.+|. +|||....+..+.+ T Consensus 88 ~~~G~l~ig~~~~~~~~~l~~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~-------- 154 (292) T PRK11242 88 LSRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLT-IREMPQERIEALLADDE----LDVGIAFAPVHSPE-------- 154 (292) T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----CCEEEEECCCCCCC-------- T ss_conf 777658630245778887389988888648897348-99768899999986798----55799836888877-------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) +...++..+.++++++++.+..+. .+...|.|+ .+.|... ++.+++++.. T Consensus 155 ---l~~~~l~~~~~~~v~~~~h~la~~---------------------~~~is~~~L----~~~~~i~--~~~~~~~~~~ 204 (292) T PRK11242 155 ---IEAQPLFTETLALVVGRTHPLAAR---------------------RKPLTLDEL----ADEPLVL--LSAEFATREQ 204 (292) T ss_pred ---CEEEEECCCEEEEEEECCCHHHHC---------------------CCCCCHHHH----CCCCEEE--ECCCCCHHHH T ss_conf ---256542045079999089804227---------------------999999998----1899899--6799857999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346) +.+.....+-.. ...-..++...+...+... .++++++-.... ....+. T Consensus 205 ~~~~~~~~~i~~-----------------------------~~~~~~~~~~~~~~~V~~g-~Gi~ilP~~~~~-~~~~l~ 253 (292) T PRK11242 205 IDRYFRRHGITP-----------------------------RVAIEANSISAVLEIVRRG-RLATLLPAAIAR-EHDDLC 253 (292) T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHHC-CEEEEEHHHHHH-HCCCEE T ss_conf 999999769998-----------------------------5367538899999999979-969970289860-089989 Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 1344576789556027987503678999707885668899999999749 Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346) Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346) .++++. -.+.|+++++.++ +....++++.|++|+.. T Consensus 254 ~i~l~~------------~~~~r~i~lv~~k-~~~~s~~~~~Fid~l~e 289 (292) T PRK11242 254 AVALDP------------PLPQRTAALLRRK-GAYRSAAARAFIELALE 289 (292) T ss_pred EEECCC------------CCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH T ss_conf 998989------------9870399999989-39889999999999986 No 15 >PRK10837 putative DNA-binding transcriptional regulator; Provisional Probab=98.37 E-value=4.9e-05 Score=46.80 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=116.5 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ....++|+.+.++.. ++..+...|.+.||++.+. +....+..-++.+.+|. +|+|..+.+..+.+ T Consensus 87 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~~~----~D~~i~~~~~~~~~--------- 152 (291) T PRK10837 87 DNGAIRIYASSTIGNYILPAMIARYRHDYPQLPLE-LSVGNSQDVIQAVLDFR----VDIGLIEGPCHSTE--------- 152 (291) T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCC----CCEEEECCCCCCCC--------- T ss_conf 88629999617999999999999999648993599-99888899999998088----41667417889987--------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) +...++..+.++++..++.+... ++ ..|.|+ .+.| .+.++.+++++..+ T Consensus 153 --l~~~~l~~~~~~~v~~p~~~l~~----------------------~~-i~~~~l----~~~~--~i~~~~~~~~r~~~ 201 (291) T PRK10837 153 --IISEPWLEDELVVFAAPDSPLAR----------------------GP-VTLEQL----AAAP--WILRERGSGTREIV 201 (291) T ss_pred --EEEEEEECCCEEEEECCCCHHHC----------------------CC-CCHHHH----HCCC--EEEECCCCCHHHHH T ss_conf --18999441418999878866537----------------------99-998998----0798--79944998689999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC--CC Q ss_conf 9885134555654101111101366000134443102466402116623677763101532100133200110011--10 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD--VL 260 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~--~~ 260 (346) ............ ..-..++...+...+ ....+|++++...+..... .+ T Consensus 202 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~v-~~G~Gia~lp~~~v~~~l~~g~L 251 (291) T PRK10837 202 DYLLLSHLPRFE-----------------------------MAMELGNSEAIKHAV-RHGLGISCLSRRVIADQLQAGTL 251 (291) T ss_pred HHHHHHCCCCCC-----------------------------EEEECCCHHHHHHHH-HHCCCEEECCHHHHHHHHHCCCE T ss_conf 999985488653-----------------------------013129799999999-95991897249999999878997 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 0134457678955602798750367899970788566889999999974 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346) ..+.. ..-++.|++|++..+ +....++++.|++|+- T Consensus 252 ~~l~~------------~~~~~~~~~~lv~~k-~~~ls~~~~~Fidfl~ 287 (291) T PRK10837 252 VEVAV------------PLPRLMRTLWRIHHR-QKHLSNALQRFLSYCQ 287 (291) T ss_pred EEEEC------------CCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHH T ss_conf 99707------------888861279999989-7865999999999986 No 16 >COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only] Probab=98.32 E-value=0.00017 Score=43.75 Aligned_cols=246 Identities=17% Similarity=0.202 Sum_probs=122.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 92489999999999998314201376799980342589999999999987798079998157620578988521013353 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTI 80 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~ 80 (346) ||+..++++.+++.+ ++. +-..|+.-|-.-+.+....+|+.|.+++. .++ ++..+-..+=..... .+--+ T Consensus 1 Mk~~~~i~~~~~La~---s~~--~~adinlYGpGGPhtaL~~vA~~~~ektg-~kV-nvt~GPq~tW~~kAk---knADi 70 (252) T COG4588 1 MKKAVLILLIFLLAF---SSA--ANADINLYGPGGPHTALKDVAKKYEEKTG-IKV-NVTAGPQATWNEKAK---KNADI 70 (252) T ss_pred CCHHHHHHHHHHHHH---HHH--HCCEEEEECCCCCCHHHHHHHHHHHHHHC-EEE-EEECCCCCHHHHHHH---CCCCE T ss_conf 933688999999972---464--04517876699986789999999878748-079-994188610445641---36745 Q ss_pred CEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC Q ss_conf 01213320247678767624878724666521541255416665456888888876410255555323673023231001 Q gi|254780707|r 81 DIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP 160 (346) Q Consensus 81 dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~ 160 (346) =||+|...+.+- .+.. ....+....-|+-.-.-++.+.+.||......++|.+ T Consensus 71 lfgaseqsalai-a~~~-~~~fs~~~i~ply~R~aiIlvkkgNPknIk~~eDll~------------------------- 123 (252) T COG4588 71 LFGASEQSALAI-AEDH-KDSFSEKNIQPLYLRPAIILVKKGNPKNIKGFEDLLK------------------------- 123 (252) T ss_pred EECCCHHHHHHH-HHHC-CCCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHC------------------------- T ss_conf 641648889999-9856-3335520253135402179962799544456888705------------------------- Q ss_pred CCCCCCCEEECC---CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHH Q ss_conf 112245035448---85423578999885134555654101111101366000134443102466402116623677763 Q gi|254780707|r 161 DFPEVRIAIYVP---SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLAR 237 (346) Q Consensus 161 ~lp~~~I~~~~r---~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 237 (346) |...|.+.-- +..|| +.++++.+...+.. ......+. ..+.+..++.+.... T Consensus 124 --~gi~ivV~dGaG~sntsg-tgvwED~agr~~~i--------------------e~v~afR~--NI~~fapnSgaArka 178 (252) T COG4588 124 --PGIGIVVNDGAGVSNTSG-TGVWEDIAGRKGNI--------------------ETVAAFRK--NIVAFAPNSGAARKA 178 (252) T ss_pred --CCCEEEEECCCCCCCCCC-CEEHHHHHCCCCCH--------------------HHHHHHHH--CEEEECCCCCHHHHH T ss_conf --786299837976447777-22048654101148--------------------89999885--238974687048999 Q ss_pred HCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCC Q ss_conf 10153210013320-01100111001344576789556027987503678999707885668899999999749874052 Q gi|254780707|r 238 IEVNKDVFGFVGLS-FYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAP 316 (346) Q Consensus 238 v~~~~~~igy~~~~-~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~ 316 (346) ..+.+++-...-.. +..+|.+... .|. .+..|-|.|.+.+...++ ..+..++|++|+.|+|+|. T Consensus 179 f~~~~~aDawItW~dWa~snpdig~-----~v~------~~~d~vIyRd~nv~~~~~---a~~ea~~F~dyl~S~EAq~- 243 (252) T COG4588 179 FENQPDADAWITWADWAKSNPDIGD-----AVE------IEKDYVIYRDFNVALAKD---ANKEARDFADYLQSDEAQK- 243 (252) T ss_pred HHCCCCCCEEEEECCHHHHCCCHHC-----EEE------CCCCEEEEEECCEEECCC---CCHHHHHHHHHHHHHHHHH- T ss_conf 8549998558870132330985010-----045------166617754020343689---9978999999972177899- Q ss_pred CCHHHHCCC Q ss_conf 202775596 Q gi|254780707|r 317 DSQLFQYGL 325 (346) Q Consensus 317 ~~~~~~~Gy 325 (346) +....|. T Consensus 244 --ifkkygW 250 (252) T COG4588 244 --IFKKYGW 250 (252) T ss_pred --HHHHHCC T ss_conf --9986076 No 17 >PRK09906 DNA-binding transcriptional regulator HcaR; Provisional Probab=98.21 E-value=0.00031 Score=42.29 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=110.2 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ....++|+-+.+... ++......|.+.||++++. +....+..-...+.+|. +||+....++.+. T Consensus 88 ~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~---------- 152 (296) T PRK09906 88 EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIE-LVSLINTQQEEKLRRGE----LDVGFMRHPVYSD---------- 152 (296) T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC---------- T ss_conf 77138832122569999999999987408986348-99758089999998699----7679873688998---------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) .+...++..+.+++++..+.|.... +-..|.|+ .+.+.....+..++..+..+ T Consensus 153 -~l~~~~l~~~~~~~~~~~~hpla~~----------------------~~i~~~dl----~~~~~i~~~~~~~~~~~~~~ 205 (296) T PRK09906 153 -EIDYLELLDEPLVVVLPVDHPLAHE----------------------KEITAAQL----DGVNFISPDPAQSGSLAPII 205 (296) T ss_pred -CEEEEEEECCEEEEEEECCCCCCCC----------------------CCCCHHHH----CCCCEEEECCCCCCCHHHHH T ss_conf -8189985046079998289810059----------------------99899997----59987963665476099999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100111001 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL 262 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~ 262 (346) .++....+... ..+...++...+.+.+.. ..+|++++..........+.. T Consensus 206 ~~~~~~~g~~p-----------------------------~~~~~~~~~~~~~~~v~~-G~Gi~~lP~~~~~~~~~~l~~ 255 (296) T PRK09906 206 KAWFAQHNSQP-----------------------------NIVQVATNILVTMNLVGM-GLGCTIIPGYMNNFNTGQVVF 255 (296) T ss_pred HHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCEEEECHHHHHHHCCCCEEE T ss_conf 99999779997-----------------------------469998989999999994-989998458773106899999 Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 344576789556027987503678999707885668899999999749 Q gi|254780707|r 263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346) Q Consensus 263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346) .++ .+ .+..+++|++.++. ...|++++|++|+-. T Consensus 256 ~pl-----------~~-~~~~~~~~l~~r~~--~~spa~~~Fi~~l~e 289 (296) T PRK09906 256 RPL-----------AG-NVPSIALLMAWKKG--EMKPALRDFIAIVQE 289 (296) T ss_pred EEC-----------CC-CCCEEEEEEEECCC--CCCHHHHHHHHHHHH T ss_conf 988-----------99-98702899998799--999999999999999 No 18 >TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). Probab=98.07 E-value=0.00047 Score=41.32 Aligned_cols=196 Identities=15% Similarity=0.198 Sum_probs=112.1 Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 01376799980342589999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 22 TFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 22 ~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) .....+|+|+.+ ... ++..+..+|.+.||++.+. +....+..-+..+.+|. +|++....+..+.+ T Consensus 83 ~~~~g~l~ig~~-~~~-~l~~~l~~f~~~~P~v~i~-i~~~~~~~~~~~L~~~~----~Di~i~~~~~~~~~-------- 147 (279) T TIGR03339 83 ALREGSLRIAAT-APY-YVLDLVARFRQRYPGIEVS-VRIGNSQEVLQALQSYR----VDVAVSSEVVDDPR-------- 147 (279) T ss_pred CCCCCEEEECCC-HHH-HHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCCC-------- T ss_conf 787451686175-177-8999999999858986057-89558087775402596----58999727889998-------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) +...++..+.++++++++.+...... ..|.++. +.|. +.++.++.++.. T Consensus 148 ---~~~~~l~~~~~~~~~~~~~~la~~~~----------------------i~~~~l~----~~~~--i~~~~~~~~~~~ 196 (279) T TIGR03339 148 ---LDRVVLGNDPLVAVVHRQHPLAERES----------------------VTLEELA----GQPL--LMREPGSVTRQT 196 (279) T ss_pred ---EEEEEEECCCEEEEEECCCHHHCCCC----------------------CCHHHHC----CCCE--EEECCCCCHHHH T ss_conf ---39999404448999918863323999----------------------9999976----9998--982899839999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346) +.+.....+-.. ..+-..++...+... .....+|+.++-..+. +...+. T Consensus 197 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~-v~~G~GiailP~~~v~-~~~~l~ 245 (279) T TIGR03339 197 TEEALAAAGVAP-----------------------------RPALEIGSREAIREA-VLAGLGVSVVSAAEVG-RDPRLR 245 (279) T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHH-HHHCCEEEEEEHHHHH-HCCCEE T ss_conf 999999779987-----------------------------536778969999999-9979938971489961-098989 Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 1344576789556027987503678999707885668899999999 Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSF 307 (346) Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~ 307 (346) .+++.... ..|++|++..+ +....|++++|+++ T Consensus 246 ~~pl~~~~------------~~~~~~l~~~~-~r~~sp~~~aFie~ 278 (279) T TIGR03339 246 VLPIVGAE------------PTMDEYLYCLK-ERRGARLIAAFLEL 278 (279) T ss_pred EEECCCCC------------CCCEEEEEEEC-CCCCCHHHHHHHHH T ss_conf 99898889------------86279999989-98689999999965 No 19 >PRK12679 cbl transcriptional regulator Cbl; Reviewed Probab=98.06 E-value=0.00028 Score=42.56 Aligned_cols=202 Identities=11% Similarity=0.034 Sum_probs=120.5 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ....+++|+-+.+... ++..+...|.+.||++++. +..+.+..-...+.+|. +|+|.++.++... T Consensus 90 ~~~G~l~Ig~~~t~a~~~LP~~l~~F~~~~P~v~l~-l~~~~~~~i~~~l~~g~----~Dl~i~~~~~~~~--------- 155 (316) T PRK12679 90 DTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLE-LIQGTPQEIATLLQNGE----ADIGIASERLSND--------- 155 (316) T ss_pred CCCCEEEEEEEECCHHCCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC--------- T ss_conf 877649999850320103819999999868995389-98478799999998799----8852224677899--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ..+...+...+..++++.++.|.... +...|.|+. +.|+ +.+..+|+++.. T Consensus 156 -p~l~~~p~~~~~~~lvvp~~HpLa~~----------------------~~vsl~~L~----~~pl--I~~~~g~~~R~~ 206 (316) T PRK12679 156 -PQLVAFPWFRWHHSLLVPLDHPLTQI----------------------TPLTLESIA----KWPL--ITYRQGITGRSR 206 (316) T ss_pred -CCCEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHHC----CCCE--EEECCCCHHHHH T ss_conf -76079980553413560189951248----------------------998999987----9998--950899849999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346) +.+.....+... ..+-...+...+...+.. .-+|+.++--.+.... T Consensus 207 id~~f~~~G~~p-----------------------------~i~~e~~~~~~i~~~V~~-GlGvailp~~a~~~~~---- 252 (316) T PRK12679 207 IDDAFARKGLLA-----------------------------DIVLSAQDSDVIKTYVAL-GLGIGLVAEQSSGEQE---- 252 (316) T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCCEEECHHHHCCCCC---- T ss_conf 999999779999-----------------------------779999989999999998-9909970144507546---- Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 134457678955602798750367899970788566889999999974 Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346) Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346) ......+-.......|.+|+.+++ ..-..+.+++|+.++- T Consensus 253 -------~~~l~~~~~~~~~~~~~~~~~~~r-~~~l~~~~~~Fi~~~~ 292 (316) T PRK12679 253 -------EKNLIRLDTRHLFDANTVWLGLKR-GQLQRNYVWRFLELCN 292 (316) T ss_pred -------CCCEEEECCCCCCCCCEEEEEEEC-CCCCHHHHHHHHHHHH T ss_conf -------898899326346766538999967-8755699999999752 No 20 >PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Probab=98.03 E-value=0.00075 Score=40.21 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=124.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCEEEEEE-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-HHHHHHHCCC Q ss_conf 92489999999999998314201-376799980-34258999999999998779807999815762057-8988521013 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTF-ARNRIRIAG-SSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVG-LKEFCRGIGD 77 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~-a~~~I~i~G-Sst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~G-i~~~~~G~~~ 77 (346) ||++.+.++++.++++..+.+.. ...++++-- +.-+ -..+.++|++++ |++| ++.--+|..- +..+.+|. . T Consensus 1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i~~W~~Yi---~~~~i~~Fe~et-GikV-~~~~~~s~ee~~akL~a~~-~ 74 (348) T PRK09501 1 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYV---PPGLLEQFTKET-GIKV-IYSTYESNETMYAKLKTYK-D 74 (348) T ss_pred CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCC---CHHHHHHHHHHH-CCEE-EEEECCCHHHHHHHHHCCC-C T ss_conf 93689999999999973503354338979998710018---978999999998-9889-9995499999999997179-9 Q ss_pred CCCCEEECCCCCC-------------HHHHHHHH-------HCCC--CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHH Q ss_conf 3530121332024-------------76787676-------2487--872466652154125541666545688888887 Q gi|254780707|r 78 DTIDIVNSSRKIT-------------QNELDECK-------KHGV--SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYK 135 (346) Q Consensus 78 ~~~dig~ssr~l~-------------~~E~~~~~-------~~~~--~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~ 135 (346) +..|+...|..+- ...+.... .... ..--.+|...+...+++|.+-.. T Consensus 75 ~~yDvv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~---------- 144 (348) T PRK09501 75 GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVD---------- 144 (348) T ss_pred CCCEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCC---------- T ss_conf 9828999796899999977984547842284812269767447748998489889975115998501147---------- Q ss_pred HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCC-CCCCCHHHHHHCCCCCCHHCCCC Q ss_conf 64102555553236730232310011122450354488542357899988513455-56541011111013660001344 Q gi|254780707|r 136 ALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGC-VRSRNFSKMRDMFKYNVQQLSVA 214 (346) Q Consensus 136 ~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (346) ..+++.|.++-. |..+=++....+. ++.|.-.+..-+. .......... .......... T Consensus 145 -------------~~~~~SW~dL~d--p~~kGki~~~d~~---~~~~~~al~~lG~~~n~~d~~~l~-~a~~~L~~~~-- 203 (348) T PRK09501 145 -------------PKSVTSWADLWK--PEYKGSLLLTDDA---REVFQMALRKLGYSGNTTDPKEIE-AAYNELKKLM-- 203 (348) T ss_pred -------------CCCCCCHHHHCC--HHHCCEEEECCCH---HHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHH-- T ss_conf -------------888887898549--6647907971667---899999999827998889999999-9999999851-- Q ss_pred CCCCCCCCCCEECCCCHHHHHHHHCCCCC--CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEC Q ss_conf 43102466402116623677763101532--1001332001100111001344576789556027987503678999707 Q gi|254780707|r 215 CTSVRQDGIAIEVDGDYTETLARIEVNKD--VFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKR 292 (346) Q Consensus 215 ~~~~~~~~~~i~~~~~~~~~~~~v~~~~~--~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~ 292 (346) .....+..+ ...+.+....- +.+|.+-.+... -...+++.+.|. .|+.-+ ...+.+.+. T Consensus 204 -------~~i~~~~sd--~~~~~l~~Gev~ia~~wsgda~~~~----~~~~~i~~v~Pk-----EG~~~w-~D~~~Ipk~ 264 (348) T PRK09501 204 -------PNVAAFNSD--NPANPYMEGEVNLGMIWNGSAFVAR----QAGTPIDVVWPK-----EGGIFW-MDSLAIPAN 264 (348) T ss_pred -------CCEEEEECC--CHHHHHHCCCCEEEEEECHHHHHHH----HCCCCCCEEECC-----CCCEEE-EEEEEEECC T ss_conf -------105898177--0546987388329987405899999----708997189757-----886699-899889899 Q ss_pred CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 8856688999999997498740522027755963489999999999996 Q gi|254780707|r 293 QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341 (346) Q Consensus 293 ~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~~ 341 (346) ........+|++|+|+.+-+.+ +....||.+--...++..-..++ T Consensus 265 --A~n~e~A~~FInf~l~Pevaa~--~a~~~~y~t~n~~A~~~l~~e~~ 309 (348) T PRK09501 265 --AKNKEGALKLINFLLRPDVAKQ--VAETIGYPTPNLAARKLLSPEVA 309 (348) T ss_pred --CCCHHHHHHHHHHHHCHHHHHH--HHHHHCCCCHHHHHHHHCCHHHH T ss_conf --9898999999998619799999--99974889830888861899886 No 21 >pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins. Probab=98.03 E-value=0.00055 Score=40.94 Aligned_cols=200 Identities=14% Similarity=0.209 Sum_probs=114.0 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ..+++|+|+-+.++.. ++..+..+|.++||++++. +....+..=++.+.+|. +|||....+..+. T Consensus 3 ~~~G~i~I~~~~~~~~~~lp~~l~~f~~~~P~i~i~-i~~~~~~~i~~~l~~g~----~Di~i~~~~~~~~--------- 68 (209) T pfam03466 3 GPRGRLRIGAPPTFAAYLLPPLLARFRERYPDVELE-LREGDSEELLDLLAEGE----LDLAIRRGPPDDP--------- 68 (209) T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CEEEEECCCCCCC--------- T ss_conf 987899999388999999999999999988892899-99898488999998698----1488731789999--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) .+...++..+.++++.+++.+... ++..+++|+ .+.+...+. .+...+.. T Consensus 69 --~~~~~~l~~~~~~~~~s~~~~l~~----------------------~~~i~~~~l----~~~~~i~~~--~~~~~~~~ 118 (209) T pfam03466 69 --GLEARPLFEEPLVLVAPPDHPLAA----------------------GEPVSLEDL----ADEPLILLE--PGSGLRDL 118 (209) T ss_pred --CEEEEEEEEEEEEEEECCCCHHHC----------------------CCCCCHHHH----CCCCEEEEC--CCCCCHHH T ss_conf --808999762413655336705542----------------------897543551----466579856--99871379 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CC Q ss_conf 9988513455565410111110136600013444310246640211662367776310153210013320011001--11 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DV 259 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~ 259 (346) |.+......... ...-..++.. ....+.....+++.++-..+.... .. T Consensus 119 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~lv~~g~Gi~~lp~~~~~~~~~~~~ 168 (209) T pfam03466 119 VDRALERAGLRP-----------------------------RVALEVNSLE-ALLAAVAAGLGIALLPRSAVARELADGR 168 (209) T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHH-HHHHHHHHCCEEEECCHHHHHHHHHCCC T ss_conf 987787648763-----------------------------0246747879-9999999499999913999998875899 Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 00134457678955602798750367899970788566889999999974 Q gi|254780707|r 260 LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346) Q Consensus 260 ~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346) +..++. ...++.+.+|++.++. ....+.++.|++|+. T Consensus 169 L~~i~~------------~~~~~~~~~~li~~~~-~~~s~~~~~f~~~l~ 205 (209) T pfam03466 169 LVVLPL------------PDPPLPRPIYLVYRKG-RRLSPAVRAFIDFLR 205 (209) T ss_pred EEEEEC------------CCCCCCCEEEEEEECC-CCCCHHHHHHHHHHH T ss_conf 899958------------8888744799999894-978999999999999 No 22 >PRK12683 transcriptional regulator CysB-like protein; Reviewed Probab=97.98 E-value=0.00047 Score=41.32 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=117.2 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ....+|+|+-+.+... ++..+...|.+.||++++. +....|..-++.+.+|. +|||....++... T Consensus 90 ~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~L~~g~----~Dl~i~~~~~~~~--------- 155 (308) T PRK12683 90 RDSGRLTVATTHTQARYALPKVVRQFTEVFPKVHLA-LRQGSPQEIAEMLLNGE----ADIGIATEALDRE--------- 155 (308) T ss_pred CCCCEEEECCCCHHHHHCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC--------- T ss_conf 777624200132011201684668999878996699-96078699999997799----7788066677888--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ..+...++..+..++++.++.|..... ...|.|+ .+.| ++.++++++++.. T Consensus 156 -~~l~~~~l~~~~~~lv~~~~hpla~~~----------------------~v~l~dl----~~~p--~I~~~~~~~~r~~ 206 (308) T PRK12683 156 -PDLVSFPYYSWHHVVVVPKGHPLTGRE----------------------NLTLEAL----AEYP--IITYDQGFTGRSH 206 (308) T ss_pred -CCCEEEEECCCCEEEEECCCCCCCCCC----------------------CCCHHHH----CCCC--EEECCCCCCHHHH T ss_conf -771687612451589846999533699----------------------9999998----5999--8961899829999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011-10 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD-VL 260 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~-~~ 260 (346) +.+.....+-.. ..+-..++...+...+. ...+++.++...+..... .+ T Consensus 207 i~~~~~~~g~~p-----------------------------~~~~e~~~~~~i~~~V~-~g~Gi~ilp~~~~~~~~~~~l 256 (308) T PRK12683 207 IDQAFAEAGAVP-----------------------------DIVLTALDADVIKTYVE-LGMGVGIVAAMAYDPQRDTGL 256 (308) T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCE T ss_conf 999999779998-----------------------------57999998999999999-798470789999878860997 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf 013445767895560279875036789997078856688999999997498 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346) ..++ -......|.+++..++ +....+.+++|++++... T Consensus 257 v~l~------------~~~~~~~~~~~i~~rk-~~~Ls~~a~~Fie~l~~~ 294 (308) T PRK12683 257 VALD------------TQHLFEANTTRVALRR-GAYLRGYAYRFIEMFAPH 294 (308) T ss_pred EEEE------------CCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHHH T ss_conf 9998------------9788766179999909-685799999999998886 No 23 >PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional Probab=97.95 E-value=0.00056 Score=40.90 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=43.8 Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCHHHH---HHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHHCCCCCCCEEE Q ss_conf 9999998314201376799980342589---999999999987798079998157620-5789885210133530121 Q gi|254780707|r 11 FVVLEVYCGTGTFARNRIRIAGSSTLFP---YSKIIAENFSEYFPEFKTPFVESGGSS-VGLKEFCRGIGDDTIDIVN 84 (346) Q Consensus 11 ~~~l~~~~~~~~~a~~~I~i~GSst~~P---~~~~~a~~y~~~~~~~~~~~~~~~GSg-~Gi~~~~~G~~~~~~dig~ 84 (346) .+.|.++|+.++.+.+++++--..+... .-..+.++|.+++ |+++..+ ..|+| .=++.+..-..+-..|+.. T Consensus 4 ~~~~~~~~a~~~~~~~~l~vyt~dsf~~d~g~~~~l~~~Fek~t-GikV~~v-~~~dg~~ll~Rl~~Eg~np~ADVv~ 79 (326) T PRK11205 4 CLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAFEAEC-GCELKFV-ALEDGVSLLNRLRLEGKNSKADVVL 79 (326) T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCEEEEE-ECCCHHHHHHHHHHCCCCCCCCEEE T ss_conf 66779986362002987999966544446686479999998987-9689999-6796799999999738999765899 No 24 >PRK12684 transcriptional regulator CysB-like protein; Reviewed Probab=97.90 E-value=0.00082 Score=39.97 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=114.2 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ..+..|+|+-+.+... ++..+...|.+.||++++. +....|..-+..+.+|. +|+|.+..++.+. T Consensus 90 ~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~--------- 155 (313) T PRK12684 90 QDQGNLTIATTHTQARYALPAAIAEFKKRYPKVRLS-ILQGSPTQIAEMVIHDQ----ADLAIATEAIADY--------- 155 (313) T ss_pred CCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC--------- T ss_conf 777514110245557515949999998448980899-97178899999997799----6655043577777--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ..+...++..+..+++++++.|.... +...|.|+ .+.|. +.++++++++.. T Consensus 156 -~~l~~~~l~~~~~~~v~~~~hpla~~----------------------~~v~l~dL----~~~p~--I~~~~~~~~r~~ 206 (313) T PRK12684 156 -KELVSLPCYQWNHAVVVPPDHPLLER----------------------KPLTLEDL----AQYPL--ITYDDAFAGRSK 206 (313) T ss_pred -CCEEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHH----CCCCE--EECCCCCCHHHH T ss_conf -87389980322168995389854469----------------------99999998----59998--962899858999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCC Q ss_conf 998851345556541011111013660001344431024664021166236777631015321001332001100-1110 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVL 260 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~ 260 (346) +.+.....+-. +..+-..++...+.+.+. ...+|+.++--.+... ...+ T Consensus 207 i~~~~~~~g~~-----------------------------p~~~~e~~~~~~i~~~V~-~GlGi~ilP~~a~~~~~~~~L 256 (313) T PRK12684 207 INKAFALRGLK-----------------------------PDIVLEAIDADVIKTYVE-LGLGVGIVADMAFDPERDRNL 256 (313) T ss_pred HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCCHHHHHHHHHCHHHCCCE T ss_conf 99999977998-----------------------------747999997999999999-598572559998467638987 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 01344576789556027987503678999707885668899999999749 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346) ..++ .......|++|+..++ +....+++++|++|+-. T Consensus 257 ~~lp------------~~~~~~~~~~~v~~~k-~~~ls~~~r~FIe~l~e 293 (313) T PRK12684 257 RAIP------------AGHLFGSNVTRVALKQ-GAYLRGYVYTFIELFSP 293 (313) T ss_pred EEEE------------CCCCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHH T ss_conf 9997------------8467766059999979-88668999999999874 No 25 >COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=97.83 E-value=0.00012 Score=44.67 Aligned_cols=277 Identities=12% Similarity=0.128 Sum_probs=118.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEE---EECCHHHH-HHHHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHHC Q ss_conf 924899999999999983142013767999---80342589-99999999998779807999815-76205789885210 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRI---AGSSTLFP-YSKIIAENFSEYFPEFKTPFVES-GGSSVGLKEFCRGI 75 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i---~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~-~GSg~Gi~~~~~G~ 75 (346) ||+.++....+++|++....+..+.+.|-- .-|--++. +-....+..++.||+.++.+-|+ -||+.--++++.|. T Consensus 6 mkk~~~~~~~~~~L~a~~~qa~as~~~lLNsSYDv~RElf~a~N~~F~~~w~~~~pG~~lti~QSHAGsSkQAraIlqGL 85 (341) T COG4150 6 MKKNLLIGATILALFAALLQAGASATELLNSSYDVSRELFAALNPAFEAQWAKDNPGDKLTIKQSHAGSSKQARAILQGL 85 (341) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC T ss_conf 88988766999999999876146706676305678999999839899988886089964687234566558899998542 Q ss_pred CCCCCCEEECC-C------C-CCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 13353012133-2------0-24767876762487872466652154125541666545688888887641025555532 Q gi|254780707|r 76 GDDTIDIVNSS-R------K-ITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKV 147 (346) Q Consensus 76 ~~~~~dig~ss-r------~-l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i 147 (346) ..+.+.|--.. . - +-+.+++....+.-+++ +.--.+.+.+.| T Consensus 86 ~ADVVTfNQVtDVqiLhdkg~lipAdWq~~lPnnsSPf------YS~~aFLVR~GN------------------------ 135 (341) T COG4150 86 KADVVTFNQVTDVQILHDKGKLIPADWQSRLPNNSSPF------YSTMAFLVRKGN------------------------ 135 (341) T ss_pred CCCEEEEECCEEEEEEHHCCCCCCHHHHHHCCCCCCCC------CCCHHHHHHCCC------------------------ T ss_conf 45667740210243211048704624564099888964------323277753689------------------------ Q ss_pred CCCCHHHHHHCCCCCCCCCCEEECCCC-CCCH--HHHHHHHHCC----CCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCC Q ss_conf 367302323100111224503544885-4235--7899988513----45556541011111013660001344431024 Q gi|254780707|r 148 VFNPLKKWSEIRPDFPEVRIAIYVPSG-KHGT--REVLEKKVLQ----EGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQ 220 (346) Q Consensus 148 ~~g~i~~W~~~~~~lp~~~I~~~~r~~-~SGT--~~~F~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (346) ...|++|+|+- ..+++++.|++ .||- +.+....-.. +++.. ........... .... . T Consensus 136 -PK~IkdW~DLv----RdDVk~iFPNPKTSGNaRYTYLAA~~~a~~af~gD~~-k~~ef~~k~~~--------Nv~V--F 199 (341) T COG4150 136 -PKNIKDWDDLV----RDDVKLIFPNPKTSGNARYTYLAAWGAADEAFGGDKA-KTEEFMTKFLK--------NVEV--F 199 (341) T ss_pred -CCCCCCHHHHH----HHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHC--------CCCE--E T ss_conf -66676577775----5034476689988876001588987888765268588-99999999961--------8834--2 Q ss_pred CCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CC-CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCC Q ss_conf 6640211662367776310153210013320011001--11-00134457678955602798750367899970788566 Q gi|254780707|r 221 DGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DV-LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNS 297 (346) Q Consensus 221 ~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~-~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~ 297 (346) |.+ ...+ ...=....||-+-+.|..+-. .+ ..+-..+.|.|...-.+ .+|.. ++=...+..+. T Consensus 200 DTG------GRgA---TTtFveRglGDVLItFEsE~~~irkqyg~d~~evVvP~~siLA--EFPVa---~Vdkvv~k~Gt 265 (341) T COG4150 200 DTG------GRGA---TTTFVERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTSILA--EFPVA---WVDKVVDKNGT 265 (341) T ss_pred CCC------CCCC---CCHHHHHCCCCEEEEEEHHHCCHHHHHCCCCCEEECCCHHHHH--HCCHH---HHHHHHHHCCC T ss_conf 168------8642---0004552566479994065302788738665237556533554--16526---77556530262 Q ss_pred CHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 8899999999749874052202775596348999999999999 Q gi|254780707|r 298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSI 340 (346) Q Consensus 298 ~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~~~~~~ 340 (346) .+..++||+|.+|+++|. ++.+.+|---.+++..+..+++ T Consensus 266 ~~~AkaYl~~LYsp~~Q~---i~a~~~~RV~d~~v~~~~k~~f 305 (341) T COG4150 266 EKAAKAYLNYLYSPQAQT---IIAEFYYRVHDPEVMAKFKDKF 305 (341) T ss_pred HHHHHHHHHHHCCCHHHH---HHHHHCCCCCCHHHHHHHHHHC T ss_conf 999999998860938879---9998353037899999987428 No 26 >PRK09986 DNA-binding transcriptional activator XapR; Provisional Probab=97.74 E-value=0.0025 Score=37.27 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=106.9 Q ss_pred CCCCEEEEEEC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 13767999803-42589999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGS-STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GS-st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ....+|+|+-. +.....+.....+|++.||++++. +....+..-+..+.+|. +|+|..+.+..+. T Consensus 78 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~~~----~D~a~~~~~~~~~--------- 143 (278) T PRK09986 78 GEAGRIELGVVGTALWGRMRPAMRHFLKENPNVEVL-FREKSPSMQMALLERRE----LDAGIWRMALEPN--------- 143 (278) T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCC--------- T ss_conf 777733687421688876428999999878983999-99788699999997799----7589963777788--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ..+...++..+.+++++..+.+..... ...+.++ .+.++..+ .+.++.+.. T Consensus 144 -~~~~~~~l~~~~~~~~~~~~hpla~~~----------------------~i~~~~l----~~~~~i~~--~~~~~~~~~ 194 (278) T PRK09986 144 -PGFTSLRLHESAFAVAVPEEHLLASKS----------------------SVPLKAL----RNEYFVTL--PSVHSDWGF 194 (278) T ss_pred -CCCEEEEEEECCCEEEECCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH T ss_conf -774268877416379965987333699----------------------9999998----59997986--799866999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346) +.+.....+.. ...+...++...+.+.+... .+++.++-.+.......+. T Consensus 195 ~~~~~~~~g~~-----------------------------~~~~~~~~~~~~~~~~V~~G-~Giailp~~~~~~~~~~v~ 244 (278) T PRK09986 195 LQRVCQQAGFS-----------------------------PQIIREVNEPQTVLAMVSMG-IGITLVADSYAQMPWPGVV 244 (278) T ss_pred HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHHHC-CEEEEEHHHHHCCCCCCEE T ss_conf 99999977998-----------------------------51799999899999999979-9899841777423789999 Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 134457678955602798750367899970788566889999999974 Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346) Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346) ..+++ . ++.+.+|++.++++ ..|++++|+++.. T Consensus 245 ~~Pl~-----------~--~~~~~~~lv~~~~~--~~p~~~~fi~~l~ 277 (278) T PRK09986 245 FRPLK-----------E--RIPADLYIVYHQQQ--ATPALEKLLAALT 277 (278) T ss_pred EEECC-----------C--CCCEEEEEEECCCC--CCHHHHHHHHHHC T ss_conf 99889-----------9--98038999984999--9999999999865 No 27 >PRK12682 transcriptional regulator CysB-like protein; Reviewed Probab=97.58 E-value=0.0026 Score=37.22 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=111.2 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ...+|+|+-+.+... ++..+..+|.+.||++++. +....+..-.+.+.+|. +|+|....++.+. T Consensus 91 ~~G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~---------- 155 (309) T PRK12682 91 DSGTLTIATTHTQARYVLPRVVAKFRKRYPKVNLS-LHQGSPDEIAQMVISGE----ADIGIATESLDDD---------- 155 (309) T ss_pred CCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCHHHHHCCCCCC---------- T ss_conf 77741212431333203862539999878983799-98378299999997699----7645650777789---------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) ..+...++..+..++++.++.+.... +..+|.|+ .+.|...+ ++++.++..+ T Consensus 156 ~~l~~~~l~~~~~~~v~~~~h~la~~----------------------~~i~~~dL----~~~p~I~~--~~~~~~r~~~ 207 (309) T PRK12682 156 PDLVTLPCYDWTHAVIVPSDHPLAQK----------------------ERITLEDL----AEYPLITY--HPGFTGRSAI 207 (309) T ss_pred CCEEEEEEECCCEEEEECCCCHHHCC----------------------CCCCHHHH----CCCCEEEE--CCCCCHHHHH T ss_conf 88089993315236761699721149----------------------99999998----28997972--7998679999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCCC Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100-11100 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVLK 261 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~~ 261 (346) .+.....+-. ...+-...+...+.+.+. ...+|++++--..... ...+. T Consensus 208 ~~~~~~~g~~-----------------------------p~~~~~~~~~~~~~~~v~-~G~Gi~~lp~~~~~~~~~~~Lv 257 (309) T PRK12682 208 DKAFAAAGLQ-----------------------------PDIVLEAIDSDVIKTYVR-LGLGVGIIAEMAYRPDRDGDLV 257 (309) T ss_pred HHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCEEEHHHHHHHHHHHCCCEE T ss_conf 9999977999-----------------------------626999998999999999-5994242289983376479989 Q ss_pred CCCCCCCCCCHHHHCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf 13445767895560279875-036789997078856688999999997498 Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYP-ISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346) Q Consensus 262 ~~~~~~v~p~~~~i~~g~YP-l~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346) .++. .++ ..++.|++.. ++....+.+++|++|+-.. T Consensus 258 ~v~~-------------~~~~~~~~~~l~~r-k~~~l~~~~~~FId~l~e~ 294 (309) T PRK12682 258 ALPA-------------GHLFGPNTAWVAVK-RGAYLRNYVYDFIELLAPH 294 (309) T ss_pred EEEC-------------CCCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHH T ss_conf 9979-------------88777617999996-9661189999999999987 No 28 >COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=97.57 E-value=0.0023 Score=37.45 Aligned_cols=234 Identities=15% Similarity=0.159 Sum_probs=102.8 Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC-CCCCEEECCCCCCHHHHHH--------------HHHCCCCCCEE Q ss_conf 99999987798079998157620578988521013-3530121332024767876--------------76248787246 Q gi|254780707|r 43 IAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGD-DTIDIVNSSRKITQNELDE--------------CKKHGVSDIQE 107 (346) Q Consensus 43 ~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~-~~~dig~ssr~l~~~E~~~--------------~~~~~~~~~~~ 107 (346) +.+.|++. +++++. +.-.||+..+...+.-..+ ...|+..++.+..-..+.. ........... T Consensus 1 ~~~~f~~~-~gikv~-~~~~~s~~~~~~~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~~~~~i~~~~~~~~~~ 78 (299) T COG1840 1 LIKAFEKK-PGIKVE-FVDAGSGELLARIIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSPELDEIPAWAPDPDGA 78 (299) T ss_pred CHHHHHHC-CCCEEE-EEECCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 95567337-796689-8748848999999972248998818960681699999857972226983465653313464446 Q ss_pred EEE-ECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCE-EECCCCCCCHHHHHHHH Q ss_conf 665-2154125541666545688888887641025555532367302323100111224503-54488542357899988 Q gi|254780707|r 108 VTI-GHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIA-IYVPSGKHGTREVLEKK 185 (346) Q Consensus 108 ~~v-~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~-~~~r~~~SGT~~~F~~~ 185 (346) ... -....++++|......... ...+.|.|+-. |.-.=. ...|+..||+ .+... T Consensus 79 ~~~~~~~~~~~~~n~~~~~~~~~--------------------~~P~~w~DL~~--p~~kg~i~~~~p~~s~~--~~~~~ 134 (299) T COG1840 79 YGGGYVGPLVFAVNTDYNKDLLK--------------------PVPKSWADLAK--PEYKGKVQMADPTSSGT--AYAAL 134 (299) T ss_pred CCCCEEEEEEEEEEEECCCCCCC--------------------CCCCCHHHHHC--HHHCCCEEEECCCCCHH--HHHHH T ss_conf 65644778999996110344568--------------------99867998709--88669846547885589--99999 Q ss_pred HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC Q ss_conf 51345556541011111013660001344431024664021166236777631015321001332001100111001344 Q gi|254780707|r 186 VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPI 265 (346) Q Consensus 186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~ 265 (346) ... ...+......+........ . . .....+..+...+......+|+.-..+...........++ T Consensus 135 ~~~---~~~G~~~~~~~l~~l~~n~--~----------~-~~~~~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v 198 (299) T COG1840 135 LAL---QAYGEEKGWAYLKGLAANL--A----------T-YTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPV 198 (299) T ss_pred HHH---HHCCHHHHHHHHHHHHHHC--C----------C-CCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCE T ss_conf 999---8648799999999999851--3----------3-4578828899997479864788721079999751469856 Q ss_pred CCCCCCHHHHCCCCCCCEEEEEE-EEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCC-CCCH Q ss_conf 57678955602798750367899-97078856688999999997498740522027755963-4899 Q gi|254780707|r 266 DGIVPSMGTIVSGLYPISRPLLF-YVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLI-PISN 330 (346) Q Consensus 266 ~~v~p~~~~i~~g~YPl~r~ly~-yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~Gyv-PLp~ 330 (346) .-+.|.. | +.+. +..+ .+++.+ ..++.|.|++|++|+++|. ++...++. ++|. T Consensus 199 ~iv~P~~-----G-~~v~-~~~vaiik~a~--~~e~Ak~fid~llS~egQ~---~~~~~~~~~~~~~ 253 (299) T COG1840 199 EVVYPEE-----G-TGVN-PSGVALLKKAK--NPEAAKLFIDFLLSKEGQE---ILAKKGYSPEIPV 253 (299) T ss_pred EEEECCC-----C-CEEE-EEEEEEECCCC--CHHHHHHHHHHHCCHHHHH---HHHHCCCCCCCCC T ss_conf 9994898-----8-6897-54355434899--9899999999980898899---9984175766788 No 29 >TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function. Probab=97.55 E-value=0.0049 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=29.8 Q ss_pred EEEEEECCCCCCCHHHHH-HHHHHHCHHHCC-CCCHHHHCCCCCCCHHHHHHHHHHHHCC Q ss_conf 899970788566889999-999974987405-2202775596348999999999999607 Q gi|254780707|r 286 LLFYVKRQHFNSVLGLRE-YVSFSVSDEMMA-PDSQLFQYGLIPISNEERKSVRDSIAVG 343 (346) Q Consensus 286 ly~yv~~~~~~~~~~~~~-Fl~~~ls~~~~~-~~~~~~~~GyvPLp~~~~~~~~~~~~~~ 343 (346) .+.+-+.-+.+....+++ |+++--++.+.. .-......||+|..++.++-+|+..++- T Consensus 227 ~~~v~~~l~~~~~~~i~~all~l~~~d~~~~~~l~~~~~~gf~~a~d~DYd~vR~~~ka~ 286 (288) T TIGR03431 227 PIVYRKDLPADLKAKIRKAFLNYHKTDKACFEKIAGGDLKGFVAASDKDYDPIRDLKKAK 286 (288) T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH T ss_conf 189969999999999999998078678768998742554782888878779999999861 No 30 >PRK03601 transcriptional regulator HdfR; Provisional Probab=97.53 E-value=0.0052 Score=35.51 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=58.6 Q ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC Q ss_conf 7679998034258-999999999998779807999815762057898852101335301213320247678767624878 Q gi|254780707|r 25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS 103 (346) Q Consensus 25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~ 103 (346) ..+++|+.+.++. .+...|-..|.+.||++++. +....+..-++.+.+|. +|+|.+.-+++..++ T Consensus 88 ~~~l~ig~~~~~~~~~l~~~l~~~~~~~P~v~l~-l~~~~~~~~~~~L~~~~----~Dl~i~~~~p~~~~l--------- 153 (275) T PRK03601 88 HNEFSIGASASLWECMLNQWLGRLYQNQEELQFE-ARIAQRQSLVKQLHERQ----LDLLITTEAPKMDEF--------- 153 (275) T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCCE--------- T ss_conf 7609999775778999999999999978896799-99889899999997799----358997779988884--------- Q ss_pred CCEEEEEECCCCEEEECCCC Q ss_conf 72466652154125541666 Q gi|254780707|r 104 DIQEVTIGHDGILLVSDRDM 123 (346) Q Consensus 104 ~~~~~~v~~d~i~i~~n~~~ 123 (346) ...+++...++++...+. T Consensus 154 --~~~~l~~~~l~l~~s~~~ 171 (275) T PRK03601 154 --SSQLLGHFTLALYTSAPS 171 (275) T ss_pred --EEEEECCEEEEEEECCCC T ss_conf --799952356899977864 No 31 >pfam01547 SBP_bac_1 Bacterial extracellular solute-binding protein. This family also includes the bacterial extracellular solute-binding protein family POTD/POTF. Probab=97.49 E-value=0.0031 Score=36.75 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=38.3 Q ss_pred ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH----HHCCCCCCCEEECCCCC Q ss_conf 03425899999999999877980799981576205789885----21013353012133202 Q gi|254780707|r 32 GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC----RGIGDDTIDIVNSSRKI 89 (346) Q Consensus 32 GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~----~G~~~~~~dig~ssr~l 89 (346) ++.+-...++.+.++|+++||+++| .++..+++.....+. +|. ...||...+... T Consensus 2 ~~~~~~~~~~~li~~Fe~~~p~IkV-~~~~~~~~~~~~kl~~~~~ag~--~~~Dv~~~~~~~ 60 (260) T pfam01547 2 ASLTEGAALQALVAEFEKEHPGIKV-EVESVGSGSLAQKLTTAIAAGD--GPADVFASADDW 60 (260) T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHHHHHHHHCCC--CCCEEEEECCHH T ss_conf 9866899999999999988849089-9997882799999999997699--986699978365 No 32 >COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism] Probab=97.47 E-value=0.0063 Score=35.05 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=84.7 Q ss_pred HHHHHCCCCCCCCEEEEEECCHHH--HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCH Q ss_conf 999831420137679998034258--999999999998779807999815762057898852101335301213320247 Q gi|254780707|r 14 LEVYCGTGTFARNRIRIAGSSTLF--PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQ 91 (346) Q Consensus 14 l~~~~~~~~~a~~~I~i~GSst~~--P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~ 91 (346) +.+...+++. +..++++-.+++. -+...+-..|.+ .++..+ .+-++|+|..++..-.|. +|....-.|-.+ T Consensus 19 la~~~a~sa~-~~~LrmATTTSt~dtGLLd~l~p~fE~-~~g~~v-~~vAvGTG~ALkmge~gd----vDvv~vHapk~E 91 (280) T COG2998 19 LASYSASSAD-AAELRMATTTSTEDTGLLDVLLPKFEK-YTGYDV-QVVAVGTGKALKMGERGD----VDVVIVHAPKAE 91 (280) T ss_pred HHHHHCCCCC-CCEEEEEEECCCCCCCCHHHHHHHHHH-CCCCEE-EEEEECCHHHHHHHCCCC----CCEEEEECCHHH T ss_conf 9998605754-203788543024556318887776643-369658-999812358775112688----678998370778 Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEC Q ss_conf 67876762487872466652154125541666545688888887641025555532367302323100111224503544 Q gi|254780707|r 92 NELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYV 171 (346) Q Consensus 92 ~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~ 171 (346) .|. ..... .+...++.+.-..++-..+.|..-.....+.+.|- .| .+...+.+. T Consensus 92 ~~f--v~~G~--gv~r~~vmYNdFiiVgp~~dpA~~k~~kn~~e~fe------------~I----------a~~ka~FvS 145 (280) T COG2998 92 KEF--VKDGF--GVDRRPVMYNDFIIVGPADDPAGIKDAKNGKEAFE------------KI----------AEEKAKFVS 145 (280) T ss_pred HHH--HHCCC--CCCCCCEEEEEEEEECCCCCCHHCCCCHHHHHHHH------------HH----------HHCCCEEEE T ss_conf 999--87278--86676101311799877666111122000899999------------99----------972890574 Q ss_pred CCCCCCHHHH Q ss_conf 8854235789 Q gi|254780707|r 172 PSGKHGTREV 181 (346) Q Consensus 172 r~~~SGT~~~ 181 (346) |.|.|||..- T Consensus 146 RGD~SGT~~~ 155 (280) T COG2998 146 RGDNSGTDSK 155 (280) T ss_pred CCCCCCCCHH T ss_conf 2787784277 No 33 >PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional Probab=97.45 E-value=0.0066 Score=34.95 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=59.4 Q ss_pred HHHHHHHHCCCCCCCCEEEE--EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH----HCCCCCCCEEE Q ss_conf 99999983142013767999--8034258999999999998779807999815762057898852----10133530121 Q gi|254780707|r 11 FVVLEVYCGTGTFARNRIRI--AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCR----GIGDDTIDIVN 84 (346) Q Consensus 11 ~~~l~~~~~~~~~a~~~I~i--~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~----G~~~~~~dig~ 84 (346) -+++++..++.+.+..+|+. .-+....-.++.++++|++.||+++|..+..+.-..-+..++. |. ..||.. T Consensus 12 ~~~~~~~~~~~a~a~~eI~fWh~~~g~~~~~l~~lv~eFn~~~p~i~V~~~~~g~y~~~l~k~~aa~~ag~---~Pdv~~ 88 (439) T PRK10974 12 GLALGLALSGNAQAVTEIPFWHSMEGELGKEVDSLAQRFNASQPDYKIVPVYKGNYEQNLAAGIAAFRSGN---APAILQ 88 (439) T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC---CCEEEE T ss_conf 99999984455679769999358998157999999999998785918999865899999999999872699---982999 Q ss_pred CCC-------------CCCH-----------HHH-HHHH----HCCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 332-------------0247-----------678-7676----24878724666521541255416665 Q gi|254780707|r 85 SSR-------------KITQ-----------NEL-DECK----KHGVSDIQEVTIGHDGILLVSDRDMV 124 (346) Q Consensus 85 ssr-------------~l~~-----------~E~-~~~~----~~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346) ... |+.+ .+. .... ......+-.+|+..+..+++||++.. T Consensus 89 ~~~~~~~~~~~~~~l~pl~~~~~~~~~~~d~~~~~p~~~~~~~~~~~Gk~yglP~~~s~~vlyYNkdlf 157 (439) T PRK10974 89 VYEVGTATMMASKAIKPVYDVFKDAGIPFDESQFVPTVAGYYSDAKTGHLLSQPFNSSTPVLYYNKDAF 157 (439) T ss_pred ECCCCHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEHHHH T ss_conf 874309999976997771798972587878565327888761257798699983037765999858999 No 34 >COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism] Probab=97.31 E-value=0.0099 Score=33.96 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=61.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH-H--HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH-HHCC Q ss_conf 9248999999999999831420137679998034258-9--9999999999877980799981576205789885-2101 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLF-P--YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC-RGIG 76 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~-P--~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~-~G~~ 76 (346) ||++++.++++.++.++|++++.+..++++.=..+.. . .-.++.++|+++| +.++..+..++.+.=+..++ +|. T Consensus 1 m~~~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~-~~~v~fV~~~d~v~llnRl~leg~- 78 (336) T COG4143 1 MRRLLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEY-GCKVNFVALGDGVELLNRLILEGK- 78 (336) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHHCCC- T ss_conf 902499999999999986577634853899997634225688578999999985-952899970758999999997078- Q ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCC------------------CEEEEEECCCCEEEECCCC Q ss_conf 3353012133202476787676248787------------------2466652154125541666 Q gi|254780707|r 77 DDTIDIVNSSRKITQNELDECKKHGVSD------------------IQEVTIGHDGILLVSDRDM 123 (346) Q Consensus 77 ~~~~dig~ssr~l~~~E~~~~~~~~~~~------------------~~~~~v~~d~i~i~~n~~~ 123 (346) +-..|+. --+....++...+.+... ...+|..++-++++|+..- T Consensus 79 ~~~ADvv---vGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~ 140 (336) T COG4143 79 NPKADVV---VGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTK 140 (336) T ss_pred CCCCCEE---EECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH T ss_conf 9888589---9347277888885587666789855788876535675101245412899976577 No 35 >COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Probab=97.30 E-value=0.01 Score=33.87 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=34.8 Q ss_pred EEEEEECCHH---HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC-CCCEEECC Q ss_conf 7999803425---899999999999877980799981576205789885210133-53012133 Q gi|254780707|r 27 RIRIAGSSTL---FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD-TIDIVNSS 86 (346) Q Consensus 27 ~I~i~GSst~---~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~-~~dig~ss 86 (346) +|++-....- .-.++.+.++|.++||++++. ++..+.+.-.+.+......+ ..|+...+ T Consensus 32 ~i~~~~~~~~~~~~~~~~~~i~~f~~~~p~ikV~-~~~~~~~~~~~~l~~~~~ag~~pDv~~~~ 94 (433) T COG1653 32 TITFWHSWTGGEEADALEELIKEFEKENPGIKVK-VVNVPGDDYLQKLLTALASGDAPDVVQLD 94 (433) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 3999983378731589999999999777984799-98567588999999998579998199977 No 36 >PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Probab=97.27 E-value=0.011 Score=33.72 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=112.5 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ....|+|+-+.++.+ ++..+...|.+.||++++. +....|..-+..+.+|. +|+|....+.... T Consensus 89 ~~G~lrig~~~~~~~~llp~~l~~f~~~~P~v~i~-l~~~~~~~l~~~l~~g~----~D~~i~~~~~~~~---------- 153 (305) T PRK11151 89 MSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMY-LHEAQTHQLLAQLDSGK----LDCAILALVKESE---------- 153 (305) T ss_pred CCCEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC---------- T ss_conf 76414311022233323827799986238983799-99887577787865788----5379984588998---------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) .+...++..+.+++++..+.|.... +...|.|+. +.+. +.+++++++++.. T Consensus 154 -~~~~~~l~~e~l~lv~~~~hpla~~----------------------~~i~l~~L~----~~~~--i~~~~~~~~r~~~ 204 (305) T PRK11151 154 -AFIEVPLFDEPMLLAVYEDHPWANR----------------------DRVPMSDLA----GEKL--LMLEDGHCLRDQA 204 (305) T ss_pred -CCEEEEECCCCEEEEEECCCCCCCC----------------------CCCCHHHHC----CCCE--EEECCCCCHHHHH T ss_conf -7268762046279999589843369----------------------998999976----9988--9968998599999 Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC--CCCC Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100--1110 Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN--ADVL 260 (346) Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~--~~~~ 260 (346) .++....+..... .-...+...+.+.+. ...+++.++...+... ...+ T Consensus 205 ~~~~~~~g~~~~~-----------------------------~~~~~~~~~i~~lV~-~G~Gv~ilp~~~v~~~~~~~~l 254 (305) T PRK11151 205 MGFCFEAGADEDT-----------------------------HFRATSLETLRNMVA-AGSGITLLPALAVPNERKRDGV 254 (305) T ss_pred HHHHHHCCCCCCE-----------------------------EEEEECHHHHHHHHH-HCCCEEECCHHHHHHHCCCCCE T ss_conf 9999977999873-----------------------------899944799999999-2996898359998622126988 Q ss_pred CCCCCCCCCCCHHHHCCCCCC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf 013445767895560279875-036789997078856688999999997498 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYP-ISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YP-l~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346) ..+++ ..| +.|+++++..+ +....+++++|++++-+. T Consensus 255 ~~~pl-------------~~~~~~r~i~lv~r~-~~~ls~~~~~~~e~ir~~ 292 (305) T PRK11151 255 CYLPC-------------IKPEPRRTIGLVYRP-GSPLRSRYEQLAEAIRAR 292 (305) T ss_pred EEEEC-------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHHH T ss_conf 99988-------------899973699999989-098789999999999998 No 37 >PRK03537 hypothetical protein; Provisional Probab=97.21 E-value=0.0044 Score=35.93 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.9 Q ss_pred CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCC Q ss_conf 79875036789997078856688999999997498740522027755963489 Q gi|254780707|r 277 SGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPIS 329 (346) Q Consensus 277 ~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp 329 (346) ...|||+-. + +..+..+.|++|++|+++|. +|.+.||-|-| T Consensus 146 ~~~Y~iav~-----~----~a~~~A~~f~~flls~~gQ~---iL~~~GF~pp~ 186 (188) T PRK03537 146 GANYGLAVL-----K----DASEAARPLAEFILSPKGQA---ILAQYGFSPPP 186 (188) T ss_pred CCCEEEEEC-----C----CCCHHHHHHHHHHCCHHHHH---HHHHCCCCCCC T ss_conf 632357873-----6----88099999999973999999---99980899999 No 38 >TIGR01256 modA molybdate ABC transporter, periplasmic molybdate-binding protein; InterPro: IPR005950 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represents a hydrophylioc periplasmic-binding protein in Gram-negative organisms and its counterpart in Gram-positive organisms is a lipoprotein. The other components of the system include ModB, an integral membrane protein and ModC, the ATP-binding subunit. Almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.; GO: 0015412 molybdate transmembrane-transporting ATPase activity, 0015689 molybdate ion transport, 0030288 outer membrane-bounded periplasmic space. Probab=97.20 E-value=0.013 Score=33.29 Aligned_cols=216 Identities=20% Similarity=0.210 Sum_probs=114.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCC Q ss_conf 58999999999998779807999815762057898852101335301213320247678767624878724666521541 Q gi|254780707|r 36 LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGI 115 (346) Q Consensus 36 ~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i 115 (346) +.--++.++++|++.||+.+| +++=++||.=.+|+.+|. -+|+=.|-.....+++-+ +..+......+++.+-+ T Consensus 4 lT~Al~~i~~~F~k~~g~~~V-v~sFgsSg~L~~QI~~GA---P~D~F~SA~~~~~~~L~~--~g~~v~~~~~~~~~n~L 77 (225) T TIGR01256 4 LTDALKEIAKQFEKRTGKNKV-VFSFGSSGTLYTQIENGA---PADVFISADEKRPKKLVD--KGLVVKGSEFVYAGNKL 77 (225) T ss_pred HHHHHHHHHHHHHCCCCCCEE-EEEECCCHHHHHHHHCCC---CEEEEECCCCCCCHHHHH--CCCEECCCCEEEEEEEE T ss_conf 468999999886200899569-998768178999997179---788766146345404663--78730254458986218 Q ss_pred EEEECCC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 2554166-654568888888764102555553236730232310011122450354488542357899988513455565 Q gi|254780707|r 116 LLVSDRD-MVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRS 194 (346) Q Consensus 116 ~i~~n~~-~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~ 194 (346) |++...+ .....+... . -.+|-.+ +.+..|-+- ++.+--+......++.+...+. T Consensus 78 VL~~~~~~~~~~~~~~l------~-------------~p~~~~~---l~~~~vaig--dP~~~P~G~~A~E~L~~lgl~~ 133 (225) T TIGR01256 78 VLISPKNSRVVDSLDIL------K-------------KPGWVIV---LKDKTVAIG--DPKHAPYGAAAKEVLQKLGLWE 133 (225) T ss_pred EEEECCCCCCCCCHHHH------C-------------CCCEEEE---EECCCCCCC--CCCCCHHHHHHHHHHHHCCCCH T ss_conf 99853554201302211------3-------------8974899---863702346--8244435799999997079762 Q ss_pred CCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCC-CHHHHHHHHCCC--CCCCCCCCCCHHHH-CCCCCCCCCCCCCCC Q ss_conf 41011111013660001344431024664021166-236777631015--32100133200110-011100134457678 Q gi|254780707|r 195 RNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDG-DYTETLARIEVN--KDVFGFVGLSFYKN-NADVLKLVPIDGIVP 270 (346) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~v~~~--~~~igy~~~~~~~~-~~~~~~~~~~~~v~p 270 (346) .-.. -+.+++ +-.+..+.+... +-+|.|.+...... +.... T Consensus 134 ~l~~-------------------------kLV~g~P~vrQA~~~V~~~nA~~GiVa~Sdv~~~~K~~~~v---------- 178 (225) T TIGR01256 134 KLKK-------------------------KLVYGEPDVRQALQFVETGNAPIGIVALSDVIPSGKKVGSV---------- 178 (225) T ss_pred HHHC-------------------------CEEECCCCHHHHHHHHHHCCCCEEEEEHHEEEECCCCCCEE---------- T ss_conf 5644-------------------------86524888999988877258866687311022000366279---------- Q ss_pred CHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCC Q ss_conf 9556027987-50367899970788566889999999974987405220277559 Q gi|254780707|r 271 SMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYG 324 (346) Q Consensus 271 ~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~G 324 (346) .++-...| |+..|+-+.-+.. ..+..++|++|+-|++++. ++++.| T Consensus 179 --~~~p~~ly~Pi~yp~~i~~~g~---n~~~a~~f~dyL~sp~A~~---il~~YG 225 (225) T TIGR01256 179 --AVIPEDLYKPIKYPAVIVKGGK---NNAAAKAFIDYLKSPEAKE---ILRKYG 225 (225) T ss_pred --EEECHHHCCCEEEEEEEEECCC---CHHHHHHHHHHHCCHHHHH---HHHCCC T ss_conf --9963312796021178871687---6089999998707964767---863059 No 39 >PRK12681 cysB transcriptional regulator CysB; Reviewed Probab=97.19 E-value=0.013 Score=33.28 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=82.8 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ..+.+|+|+-+.++.. ++..+..+|.+.||++++. +..+.+..-.+.+.+|. +|||.+..++.. T Consensus 90 ~~~G~L~Ia~~~t~a~~~LP~~i~~F~~~~P~v~l~-l~~~~~~~i~~~l~~g~----~DlaI~~e~~~~---------- 154 (324) T PRK12681 90 PDKGSLYIATTHTQARYALPPVIKGFIKRYPRVSLH-MHQGSPTQIAEAAAKGE----ADFAIATEALHL---------- 154 (324) T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----CCCCCCCCCCCC---------- T ss_conf 876349998535888877259999999878998446-53178799999998799----872312466666---------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ..++...|...+..++++.++.|..... ...|.|+ .+.|+..+ ..+++++.. T Consensus 155 ~~dl~~~P~~~~~~~vvvp~~HPLa~~~----------------------~itl~dL----~~~plI~~--~~g~~~R~~ 206 (324) T PRK12681 155 YDDLIMLPCYHWNRSVVVPPDHPLAKKK----------------------KLTIEEL----AQYPLVTY--VFGFTGRSE 206 (324) T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH T ss_conf 8874686400032224579999655799----------------------9999998----69985961--499829999 Q ss_pred HHHHHCCC Q ss_conf 99885134 Q gi|254780707|r 182 LEKKVLQE 189 (346) Q Consensus 182 F~~~v~~~ 189 (346) +.+..... T Consensus 207 id~~f~~~ 214 (324) T PRK12681 207 LDTAFNRA 214 (324) T ss_pred HHHHHHHC T ss_conf 99999988 No 40 >PRK11233 nitrogen assimilation transcriptional regulator; Provisional Probab=96.98 E-value=0.022 Score=32.04 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=108.1 Q ss_pred CCCCCEEEEEEC-CH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH Q ss_conf 013767999803-42-5899999999999877980799981576205789885210133530121332024767876762 Q gi|254780707|r 22 TFARNRIRIAGS-ST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK 99 (346) Q Consensus 22 ~~a~~~I~i~GS-st-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~ 99 (346) ...+.+|+|+-+ ++ ..-+...+...|.+.||++++. +....|..-.+.+.+|. +|+|....+... T Consensus 87 ~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~-l~~~~~~~l~~~l~~g~----~Dlai~~~~~~~-------- 153 (305) T PRK11233 87 QALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIY-LHENSGAVLNEKLINGQ----LDMAVIYEHSPV-------- 153 (305) T ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHCCC----EEEEEEECCCCC-------- T ss_conf 78740499999621556653699999999978942999-72388799999987698----479998279898-------- Q ss_pred CCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH Q ss_conf 48787246665215412554166654568888888764102555553236730232310011122450354488542357 Q gi|254780707|r 100 HGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR 179 (346) Q Consensus 100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~ 179 (346) ..+...++..+.++++...+.|...++..++ .+.+ ++.+.++++++ T Consensus 154 ---~~l~~~~l~~~~l~lv~~~~~p~~~i~l~~l-----------------------------~~~~--~i~~~~~~~~r 199 (305) T PRK11233 154 ---AGVSSQALLKEDLFLVGTQDCPGQSVDLNAI-----------------------------AQMN--LFLPRDYSAVR 199 (305) T ss_pred ---CCCEEEEEEECCEEEEECCCCCCCCCCHHHH-----------------------------CCCC--EEECCCCCHHH T ss_conf ---8828999985358999847788787899998-----------------------------0899--89879998499 Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCC- Q ss_conf 8999885134555654101111101366000134443102466402116623677763101532100133200110011- Q gi|254780707|r 180 EVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD- 258 (346) Q Consensus 180 ~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~- 258 (346) ..+.+.....+... ..+...++...+...+. ...++++++...+..... T Consensus 200 ~~~~~~~~~~~~~~-----------------------------~~~~e~~~~~~i~~~V~-~G~GiailP~~~~~~~~~~ 249 (305) T PRK11233 200 LRVDEAFSLRRLTA-----------------------------KVIGEIESIATLTAAIA-SGMGVTVLPESAARSLCGA 249 (305) T ss_pred HHHHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHH-HCCEEEEEHHHHHHHHHHC T ss_conf 99999999779998-----------------------------47999996999999999-7997898719999987534 Q ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf -10013445767895560279875036789997078856688999999997498 Q gi|254780707|r 259 -VLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSD 311 (346) Q Consensus 259 -~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~ 311 (346) .+..+ .+. .-++.|+++++..+. ....|++++|++++++- T Consensus 250 ~~~~~~-----~~~-------~p~~~~~~~l~~~~~-r~lspaa~af~d~L~~~ 290 (305) T PRK11233 250 VNGWMS-----RIT-------TPSMSLSLSLNLSAR-ANLSPQAQAVKEILLSL 290 (305) T ss_pred CCEEEE-----ECC-------CCCCEEEEEEEEECC-CCCCHHHHHHHHHHHHH T ss_conf 976999-----259-------998665999999890-98899999999999997 No 41 >PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Probab=96.97 E-value=0.015 Score=32.95 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=55.1 Q ss_pred CCHHHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC Q ss_conf 924899999999-9999831420137679998034258999999-99999877980799981576205789885210133 Q gi|254780707|r 1 MRFFFVVLMCFV-VLEVYCGTGTFARNRIRIAGSSTLFPYSKII-AENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD 78 (346) Q Consensus 1 Mk~~~~~~~~~~-~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~-a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~ 78 (346) ||+++...++.+ +++.+.+.++.+.++|+|+=.....|+.-.- -..|.+..++.++.=.+-.+...-++++.+|. T Consensus 1 ~~~~l~~~la~~~~~~~~~~~~~~~~~~lrIgyq~~~~~~~~~~~~~~~ek~~~~~kV~w~~F~~G~~~~eAl~aG~--- 77 (314) T PRK11553 1 MRNIIKLALAGLLSVSTLAVAAESSPEALRIGYQKGSIGLVLAKSHQLLEKRFPQTKISWVEFPAGPQMLEALNVGS--- 77 (314) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHCCC--- T ss_conf 97799999999999987544433489759999617741589998528676617898358997897489999997699--- Q ss_pred CCCEEECCCC Q ss_conf 5301213320 Q gi|254780707|r 79 TIDIVNSSRK 88 (346) Q Consensus 79 ~~dig~ssr~ 88 (346) +|||.+... T Consensus 78 -iD~~~~g~~ 86 (314) T PRK11553 78 -IDLGSTGDI 86 (314) T ss_pred -CCEEEECCH T ss_conf -754511585 No 42 >PRK11716 DNA-binding transcriptional regulator IlvY; Provisional Probab=96.91 E-value=0.025 Score=31.70 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=57.0 Q ss_pred CCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 137679998034258-9999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ...++|+|+.+.+.. -+...+-..|.+.||++++. +..+.+..-+..+.+|. +|+|.+..+.... T Consensus 64 ~~~G~lri~~~~t~~~~~lp~~l~~f~~~~P~v~~~-l~~~~~~~~~~~l~~g~----~D~ai~~~p~~~~--------- 129 (269) T PRK11716 64 SLSGELSLFCSVTAAYSHLPPILDRFRAEHPLVEIK-LTTGDAADAVEKVQSGE----ADLAIAAKPETLP--------- 129 (269) T ss_pred CCCCCEEEEECHHHHHHHCCHHHHHHHHHCCCCEEE-EECCCHHHHHHHHHCCC----CCEEEEECCCCCC--------- T ss_conf 876626998514887775467899999988894489-84289999999998699----5589993787899--------- Q ss_pred CCCCEEEEEECCCCEEEECC Q ss_conf 78724666521541255416 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDR 121 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~ 121 (346) ..+...++..+.++++... T Consensus 130 -~~l~~~~l~~~~l~~v~p~ 148 (269) T PRK11716 130 -SSLAFSPIDEIPLVLIAPA 148 (269) T ss_pred -CCEEEEEEEEEEEEEEEEC T ss_conf -9769999656418999978 No 43 >PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Probab=96.77 E-value=0.014 Score=33.12 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=62.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH-----------HHHHHHHHHHCCCCEEEEEECCCCHHHHH Q ss_conf 9248999999999999831420137679998034258999-----------99999999877980799981576205789 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYS-----------KIIAENFSEYFPEFKTPFVESGGSSVGLK 69 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~-----------~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~ 69 (346) ||+++.++++++++++++...+ +..+|+++.+.+-.|+. --++++..+.- ++++. +....-..-+. T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a-~~~~l~Vg~~~~~pPf~f~~~g~~~GfdvDl~~~ia~~l-g~~~e-~~~~~~~~~i~ 77 (247) T PRK09495 1 MKSVLKVSLAALTLAFAVSSHA-ADKELVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKEL-KLDYT-LKPMDFSGIIP 77 (247) T ss_pred CHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCEEECCCCEEEEEHHHHHHHHHHHH-CCCEE-EEECCHHHHHH T ss_conf 9779999999999999876651-499499998998798057679927882999999999996-99469-99778899999 Q ss_pred HHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCC Q ss_conf 885210133530121332024767876762487872466652154125541666 Q gi|254780707|r 70 EFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDM 123 (346) Q Consensus 70 ~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~ 123 (346) .+.+| .+|++.+.-.++++-.+... +. .|......++++..++ T Consensus 78 ~l~~g----~~D~~~~~~~~T~eR~~~~~------FS-~py~~~~~~i~v~~~~ 120 (247) T PRK09495 78 ALQTK----NIDLALAGITITDERKKAID------FS-DGYYKSGLLVMVKANN 120 (247) T ss_pred HHHCC----CCCEEECCCCCCHHHHHHCC------CC-CCCEEEEEEEEEECCC T ss_conf 99769----95636466014789984333------47-7707724699998999 No 44 >COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] Probab=96.57 E-value=0.011 Score=33.72 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=73.4 Q ss_pred CCCEEEE-EECC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC Q ss_conf 3767999-8034--258999999999998779807999815762057898852101335301213320247678767624 Q gi|254780707|r 24 ARNRIRI-AGSS--TLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH 100 (346) Q Consensus 24 a~~~I~i-~GSs--t~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~ 100 (346) +...|++ +||. +=+|+-..+++.+.+..+++...++.++||-.-++.+++|. +|||++-... ..+...-. T Consensus 24 ~~~~itigTG~~~G~YY~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge----~d~alvq~d~---a~~ay~G~ 96 (321) T COG2358 24 EPKFITIGTGSTGGVYYPIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGE----ADLALVQSDV---AYEAYNGT 96 (321) T ss_pred CCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCC----CCHHHHHHHH---HHHHHHCC T ss_conf 7637999606998622303789999985147781899960654299998675376----2535666789---99987185 Q ss_pred CCC-------CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC Q ss_conf 878-------7246665215412554166654568888888764102555553236730232310011122450354488 Q gi|254780707|r 101 GVS-------DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPS 173 (346) Q Consensus 101 ~~~-------~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~ 173 (346) +.. ++..+-..+ +.+..-+++++ ..|+.|.|+.++ ++..=+ T Consensus 97 g~f~~~~~~~~lr~v~~ly---------pe~~~vv~r~d-----------------~~Ikti~DL~GK------rV~iG~ 144 (321) T COG2358 97 GSFEGKGKDENLRAVAALY---------PEPFHVVTRKD-----------------AGIKTIADLKGK------RVAIGP 144 (321) T ss_pred CCCCCCCCCCCHHHHEECC---------CCEEEEEEECC-----------------CCCCEEHHCCCC------EEEECC T ss_conf 3114566551433221305---------42089999668-----------------896560103898------886269 Q ss_pred CCCCHHHHHHHHH Q ss_conf 5423578999885 Q gi|254780707|r 174 GKHGTREVLEKKV 186 (346) Q Consensus 174 ~~SGT~~~F~~~v 186 (346) ++|||...-+..+ T Consensus 145 ~gSgt~~~a~~il 157 (321) T COG2358 145 PGSGTEATARQIL 157 (321) T ss_pred CCCCCHHHHHHHH T ss_conf 9974088999999 No 45 >COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism] Probab=96.57 E-value=0.038 Score=30.73 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=89.4 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHH---HHHHHHCCCCCCEEEEEEC Q ss_conf 5899999999999877980799981576205789885210133530121332024767---8767624878724666521 Q gi|254780707|r 36 LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNE---LDECKKHGVSDIQEVTIGH 112 (346) Q Consensus 36 ~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E---~~~~~~~~~~~~~~~~v~~ 112 (346) .-|++..+ ......+. ++. =.||.+|+-.+..|. .||+..--.-.+.- ..-.++........+.... T Consensus 5 ~D~~ld~~-~~~~~~~~--~~~---~vGS~gG~~~i~~G~----adiag~hlld~~~g~ynip~v~~~~~~~~~LI~g~~ 74 (223) T COG1910 5 HDPLLDIL-IKEAGETA--KTV---YVGSMGGLLAIKRGE----ADIAGIHLLDNESGTYNIPYVKKYLPGEAVLIRGYL 74 (223) T ss_pred CCHHHHHH-HHHCCCCC--CEE---EECCCCCHHHHHHCC----CCEEEEEECCCCCCCEEHHHHHHCCCCCEEEEEEEE T ss_conf 41788887-64152345--068---860445547666254----514442132577874423004230788469985366 Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCC Q ss_conf 54125541666545688888887641025555532367302323100111224503544885423578999885134555 Q gi|254780707|r 113 DGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCV 192 (346) Q Consensus 113 d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~ 192 (346) =-..+++.+.|| -.++.|.|+ .+.+++.+.|+.+|||+..|.+++...... T Consensus 75 Re~Gl~v~~gnp-------------------------k~i~~~edl----~~~d~~fVNR~rGSGTR~LlD~~L~~~~~~ 125 (223) T COG1910 75 REQGLMVQKGNP-------------------------KNISSLEDL----LRKDLRFVNRNRGSGTRILLDELLGELNIL 125 (223) T ss_pred EEEEEEEECCCC-------------------------CCCCCHHHH----HHCCCEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 510368864897-------------------------766249988----526757871589965899999999873767 Q ss_pred CCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCH Q ss_conf 65410111110136600013444310246640211662367776310153210013320011001110013445767895 Q gi|254780707|r 193 RSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSM 272 (346) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~ 272 (346) . +...+ +.. ..-....+..+++...--+|.- +.+.. T Consensus 126 ~---------------~~I~G---------Y~~-e~~th~avA~aVa~G~AD~GvG-------------------lr~~A 161 (223) T COG1910 126 P---------------DSIKG---------YSD-EATTHDAVASAVASGRADAGVG-------------------LRHAA 161 (223) T ss_pred C---------------HHCCC---------CCC-CCCCCHHHHHHHHCCCCCCCCC-------------------HHHHH T ss_conf 0---------------10578---------432-3212089999997589872501-------------------79999 Q ss_pred HHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHH Q ss_conf 5602798750367899970788566889999999974987 Q gi|254780707|r 273 GTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDE 312 (346) Q Consensus 273 ~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~ 312 (346) +.---.=+||.+.-|=++-.+..-..|.+|+|++-.-|++ T Consensus 162 ~~~gL~Fipl~~E~YD~virke~~~~~~vr~fi~~L~s~~ 201 (223) T COG1910 162 EKYGLDFIPLGDEEYDFVIRKERLDKPVVRAFIKALKSEG 201 (223) T ss_pred HHCCCCEEECCCCEEEEEEEHHHCCCHHHHHHHHHHCCCC T ss_conf 9849851774562578998456705888999999861212 No 46 >PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed Probab=96.56 E-value=0.046 Score=30.22 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=62.3 Q ss_pred CCHHHHHHHHHHHHH--HHHCCCCCC-CCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCC Q ss_conf 924899999999999--983142013-7679998-034258999999999998779807999815762057898852101 Q gi|254780707|r 1 MRFFFVVLMCFVVLE--VYCGTGTFA-RNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIG 76 (346) Q Consensus 1 Mk~~~~~~~~~~~l~--~~~~~~~~a-~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~ 76 (346) ||+.+.++.+.+++. +.++.++.+ ...|++= ++..-.+.++.++++|.+++ +++|. ++... .=..+|..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltvW~~~~~~~~~l~~~~~~Fe~~~-gi~V~-v~~~~--~~~~kl~~a~~ 76 (394) T PRK09474 1 IKKGLRILALSALTTLMLSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDT-GIKVT-VEHPD--KLEEKFPQVAA 76 (394) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CCEEE-EECCH--HHHHHHHHHHC T ss_conf 9415889999999999973643245667869999579705699999999974540-97799-97102--68999997420 Q ss_pred C-CCCCEEECCC-------------CCCHHHH--HHHHH------CCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 3-3530121332-------------0247678--76762------4878724666521541255416665 Q gi|254780707|r 77 D-DTIDIVNSSR-------------KITQNEL--DECKK------HGVSDIQEVTIGHDGILLVSDRDMV 124 (346) Q Consensus 77 ~-~~~dig~ssr-------------~l~~~E~--~~~~~------~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346) . ...||...+. |+++.+. ..... .....+-.+|+..+..+++||++.. T Consensus 77 ~G~~PDv~~~~~~~~~~~a~~G~l~pl~~~~~~~~~~~~~~~~a~tydGk~YgvP~~~~t~~L~YNKdl~ 146 (394) T PRK09474 77 TGDGPDIIFWAHDRFGGYAQSGLLAEVTPSKAFQDKLVPFTWDAVRYNGKLIGYPIAVEALSLIYNKDLV 146 (394) T ss_pred CCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHCEEECCEEEEECCCCCCEEEEEEHHHC T ss_conf 7999958998847699999789866388564445304633452468898888863012230688740003 No 47 >PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Probab=96.44 E-value=0.055 Score=29.80 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=65.9 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH-HHHHHHCCCCC Q ss_conf 248999999999999831420137679998-0342589999999999987798079998157620578-98852101335 Q gi|254780707|r 2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGL-KEFCRGIGDDT 79 (346) Q Consensus 2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi-~~~~~G~~~~~ 79 (346) |+++..++++.++.+++.+++++++++++- =+.-+- ..+.+.|++++ |++| ++.--+|..-. ..+.+|. .. T Consensus 6 ~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Yi~---p~~i~~Feket-GikV-~~~~~~snee~~akl~ag~--~g 78 (370) T PRK10682 6 KKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIA---PDTVANFEKET-GIKV-VYDVFDSNEVLEGKLMAGS--TG 78 (370) T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCC---HHHHHHHHHHH-CCEE-EEEECCCHHHHHHHHHCCC--CC T ss_conf 8899999999999985205664279799981676579---77999999997-9889-9995499899999996699--99 Q ss_pred CCEEECCCCCCH-------------HHHHHH-----------HHCCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 301213320247-------------678767-----------624878724666521541255416665 Q gi|254780707|r 80 IDIVNSSRKITQ-------------NELDEC-----------KKHGVSDIQEVTIGHDGILLVSDRDMV 124 (346) Q Consensus 80 ~dig~ssr~l~~-------------~E~~~~-----------~~~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346) .|+...|..+-+ ..+... ...-....-.+|...+...|+||.+-. T Consensus 79 yDvv~ps~~~v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~GI~Yn~d~v 147 (370) T PRK10682 79 FDLVVPSASFLERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKV 147 (370) T ss_pred CCEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCC T ss_conf 988997779999999769846477000867444299988410036999759988884225999976544 No 48 >PRK09791 putative DNA-binding transcriptional regulator; Provisional Probab=96.04 E-value=0.092 Score=28.57 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=62.4 Q ss_pred CCCCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH Q ss_conf 20137679998034258-99999999999877980799981576205789885210133530121332024767876762 Q gi|254780707|r 21 GTFARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK 99 (346) Q Consensus 21 ~~~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~ 99 (346) ....+++|+|+-+.++. -++..+...|.+.||++++. +....+..-+..+.+|. +||+.......+.. T Consensus 90 ~~~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-i~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~------ 158 (302) T PRK09791 90 QGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVR-IMEGQLVSMINELRQGE----LDFTINTYYQGPYD------ 158 (302) T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCC------ T ss_conf 06766339998626889871199999999988797799-99899999999998799----77899656788788------ Q ss_pred CCCCCCEEEEEECCCCEEEECCCCCCC Q ss_conf 487872466652154125541666545 Q gi|254780707|r 100 HGVSDIQEVTIGHDGILLVSDRDMVSV 126 (346) Q Consensus 100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~ 126 (346) ..+...++..+..+++.+++.|.. T Consensus 159 ---~~l~~~~l~~~~~~~v~~~~hpl~ 182 (302) T PRK09791 159 ---HEFTFEKLLEKQFAIFCRPGHPAI 182 (302) T ss_pred ---CCEEEEEEEEEEEEEEECCCCCCC T ss_conf ---764799977401599983898435 No 49 >TIGR00971 3a0106s03 sulfate ABC transporter, sulfate-binding protein; InterPro: IPR005669 Thiosulphate-binding proteins (gene cysP) specifically binds thiosulphate and are involved in the transport systems for this nutrients , . There are two conserved regions in the protein, one located in the N-terminal region and the other in the central part of these proteins. The second pattern includes two adjacent amino acids (Ser-Gly) that, in sbp, are known to be essential for sulphate binding . ; GO: 0015419 sulfate transmembrane-transporting ATPase activity, 0008272 sulfate transport, 0030288 outer membrane-bounded periplasmic space. Probab=95.84 E-value=0.11 Score=28.08 Aligned_cols=249 Identities=14% Similarity=0.153 Sum_probs=123.2 Q ss_pred EEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHCCCCCCCEEECC-------C-CCCHHHHHHH Q ss_conf 9998034258999999-9999987798079998157-620578988521013353012133-------2-0247678767 Q gi|254780707|r 28 IRIAGSSTLFPYSKII-AENFSEYFPEFKTPFVESG-GSSVGLKEFCRGIGDDTIDIVNSS-------R-KITQNELDEC 97 (346) Q Consensus 28 I~i~GSst~~P~~~~~-a~~y~~~~~~~~~~~~~~~-GSg~Gi~~~~~G~~~~~~dig~ss-------r-~l~~~E~~~~ 97 (346) ++.+-|=-++--++.- .....+.+++.++.+-|+- |||.=--.++.|...+.+-.+.+- | .|=+.++.+. T Consensus 19 ~SYD~~RELy~~~N~~F~~~W~~~~GGD~~~i~QSH~gs~KQA~~v~~G~~ADvVT~~~~~DV~~~~~~G~lI~~~W~~r 98 (320) T TIGR00971 19 VSYDVTRELYEQYNKAFEAHWKKDTGGDKVVIKQSHGGSGKQALSVLNGLEADVVTLALAYDVQILAERGRLIDKDWIKR 98 (320) T ss_pred CCCCHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 23331069998718157875666448954789742688606889987001255778888876899984387365468862 Q ss_pred HHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCC- Q ss_conf 6248787246665215412554166654568888888764102555553236730232310011122450354488542- Q gi|254780707|r 98 KKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKH- 176 (346) Q Consensus 98 ~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~S- 176 (346) ....-.+ -+..+++.|-+.|| ..|..|+|+= ...+.++.|++.| T Consensus 99 LP~NS~P------y~ST~~FLVRKGNP-------------------------K~I~DWnDL~----~~~v~~I~PNPK~S 143 (320) T TIGR00971 99 LPDNSAP------YTSTIVFLVRKGNP-------------------------KQIHDWNDLI----KPGVSVITPNPKSS 143 (320) T ss_pred CCCCCCC------CCEEEEEEEECCCC-------------------------CCCCCHHHHH----HCCCEEEECCCCCC T ss_conf 8787886------20133556754798-------------------------9646513463----35875860788986 Q ss_pred C-HHHHHH----HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCC Q ss_conf 3-578999----88513455565410111110136600013444310246640211662367776310153210013320 Q gi|254780707|r 177 G-TREVLE----KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLS 251 (346) Q Consensus 177 G-T~~~F~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~ 251 (346) | .+-.+. ....+.......+..-.....+ + ++.. +.++=...-.=...+||-+=++ T Consensus 144 G~AR~~YLaAWG~A~~~~~~D~aK~~~F~~~l~K--------------N----vEVl-D~G~RGaT~TF~ERG~GDVLI~ 204 (320) T TIGR00971 144 GGARYNYLAAWGYALHADNGDKAKAEQFVKALLK--------------N----VEVL-DSGARGATNTFVERGLGDVLIA 204 (320) T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--------------C----EEEE-ECCCCCCCCCHHHCCCCHHHHH T ss_conf 4157899998766751378762458999999850--------------1----0332-0688865210111063300134 Q ss_pred HHHHCCCCCCCC---CCCCCCCCHHHHCCCCCCCEEEEEEEEEC--CCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCC Q ss_conf 011001110013---44576789556027987503678999707--8856688999999997498740522027755963 Q gi|254780707|r 252 FYKNNADVLKLV---PIDGIVPSMGTIVSGLYPISRPLLFYVKR--QHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLI 326 (346) Q Consensus 252 ~~~~~~~~~~~~---~~~~v~p~~~~i~~g~YPl~r~ly~yv~~--~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~Gyv 326 (346) +..+....-..+ ..+-|.|+. +|.. ..|.+ .|.+ +..++....++||+|++|.++|. ++...=|= T Consensus 205 ~E~E~~~~~~~~~~~~FE~V~P~~-~ILA-E~~V~-----~VDK~V~~~~T~~~A~AYL~yLYSP~~Q~---I~~~~yYR 274 (320) T TIGR00971 205 FENEALLIRKELEKDKFEIVIPSE-SILA-EPTVS-----VVDKVVEKKGTKKVAEAYLKYLYSPEGQE---IIAKNYYR 274 (320) T ss_pred HHHHHHHHHHHHCCCCCEEECCCC-CCCC-CCCEE-----EEECCCCCCCHHHHHHHHHHHHCCCCHHH---HHHHCCCC T ss_conf 578899999963348726864774-3213-56503-----57433032345899999997404941356---76542678 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 48999999999999 Q gi|254780707|r 327 PISNEERKSVRDSI 340 (346) Q Consensus 327 PLp~~~~~~~~~~~ 340 (346) |=.+++.+|...++ T Consensus 275 ~~~~~v~~K~~~~F 288 (320) T TIGR00971 275 VRDAEVAKKYEDKF 288 (320) T ss_pred CCCHHHHHHHHCCC T ss_conf 88888986775168 No 50 >PRK10341 DNA-binding transcriptional activator TdcA; Provisional Probab=95.62 E-value=0.14 Score=27.58 Aligned_cols=196 Identities=11% Similarity=0.134 Sum_probs=101.0 Q ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC--CCCCHHHHHHHHHCC Q ss_conf 7679998034258-9999999999987798079998157620578988521013353012133--202476787676248 Q gi|254780707|r 25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS--RKITQNELDECKKHG 101 (346) Q Consensus 25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss--r~l~~~E~~~~~~~~ 101 (346) ..+|+++-++++. .++..+..+|.+.||++++. +....+..-++.+.+|. +||+... .+.... T Consensus 96 ~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~~--------- 161 (312) T PRK10341 96 VVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVS-MYEAQLSSFLPAIRDGR----LDFAIGTLSNEMKLQ--------- 161 (312) T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CEEEEEECCCCCCCC--------- T ss_conf 3257435406889999999999999988897799-99899999999996698----619997436877778--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) .+...++..+..+++.++..+... ..+|.++. +.+ .+.+..+++.+.. T Consensus 162 --~~~~~~l~~~~~~lv~~~~~p~~~------------------------~~~l~~L~----~~~--~il~~~~~~~~~~ 209 (312) T PRK10341 162 --DLHVEPLFESEFVLVASKSRTCTG------------------------TTTLESLK----NEQ--WVLPQTNMGYYSE 209 (312) T ss_pred --CEEEEEEECCCEEEEECCCCCCCC------------------------CCCHHHHC----CCC--EEEECCCCCHHHH T ss_conf --749999512428999767542348------------------------97989980----798--6860699858999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHH-CCCCC Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110-01110 Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKN-NADVL 260 (346) Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~-~~~~~ 260 (346) +.+.....+-.. ..+-..++...+.+.+. ....|+.++...... ....+ T Consensus 210 ~~~~~~~~g~~~-----------------------------~~~~~~~s~~~i~~lv~-~g~gi~~lP~~~~~~~~~~~L 259 (312) T PRK10341 210 LLTTLQRNGISI-----------------------------ENIVKTDSVVTIYNLVL-NADFLTVIPCDMTSPFGSNQF 259 (312) T ss_pred HHHHHHHCCCCC-----------------------------CCEEEECHHHHHHHHHH-HCCEEEEEHHHHHHHHCCCCE T ss_conf 999999769998-----------------------------81699890999999999-799589726999966318989 Q ss_pred CCCCCCCCCCCHHHHCCCCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 0134457678955602798750-3678999707885668899999999749 Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPI-SRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346) Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl-~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346) ..+++ ..|+ .+.++++.++ +....++++.|++++-. T Consensus 260 ~~lpl-------------~~~~~~~~~~lv~~k-~~~ls~a~~~fie~~ke 296 (312) T PRK10341 260 ITIPI-------------KETLPVARYAAVWSK-NYRIKKAASVLVELAKE 296 (312) T ss_pred EEEEC-------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH T ss_conf 99989-------------998851189999989-39889999999999998 No 51 >PRK11260 cystine transporter subunit; Provisional Probab=95.36 E-value=0.17 Score=27.05 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=55.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC----------CEEEEEECCHHHHHH------------HHHHHHHHHHCCCCEEEEEE Q ss_conf 48999999999999831420137----------679998034258999------------99999999877980799981 Q gi|254780707|r 3 FFFVVLMCFVVLEVYCGTGTFAR----------NRIRIAGSSTLFPYS------------KIIAENFSEYFPEFKTPFVE 60 (346) Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~a~----------~~I~i~GSst~~P~~------------~~~a~~y~~~~~~~~~~~~~ 60 (346) +..++.++.+++.++|+.++.+. .+|+++-...--|+. -.+++++.+.- ++++. +. T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~d~~G~~~GfdvDl~~~ia~~l-g~~~e-~~ 83 (264) T PRK11260 6 RQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLTGFEVEFAEALAKHL-GVKAS-LK 83 (264) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHH-CCCEE-EE T ss_conf 99999999999999835765434243999986998999977898893689999998887199999999984-99569-99 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCC Q ss_conf 5762057898852101335301213320247678767624878724666521541255416665 Q gi|254780707|r 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMV 124 (346) Q Consensus 61 ~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~ 124 (346) ......-+..+.+|. +|+.++.-.++++-.+.. .+ ..|.......+++..+++ T Consensus 84 ~~~~~~~i~~L~~g~----~Di~~~~~t~T~eR~~~~------~F-s~PY~~~~~~~~v~~~~~ 136 (264) T PRK11260 84 PTKWDGMLASLDSKR----IDVVINQVTISDERKKKY------DF-STPYTVSGIQALVKKGNE 136 (264) T ss_pred ECCHHHHHHHHHCCC----CCEEECCCCCCHHHHHHC------CC-CCCEEEEEEEEEEECCCC T ss_conf 788899999986699----466725753588888517------76-774377445999987897 No 52 >PRK12680 transcriptional regulator CysB-like protein; Reviewed Probab=94.97 E-value=0.23 Score=26.38 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=79.2 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ....+++|+-..++.. +.-.....|.+.||++++. +..+.+..-.+.+.+|. +|||....+..+.+ T Consensus 90 ~~~G~L~Ig~~~t~a~~~LP~vi~~f~~~yP~V~l~-l~~~~~~~l~e~l~~g~----~Diai~~~~~~~~~-------- 156 (327) T PRK12680 90 ESQGQLTLTTTHTQARFVLPPAVAQIKQAYPQVSVH-LQQAAESAALDLLGQGD----ADIAVVSTAGGEPS-------- 156 (327) T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCCC-------- T ss_conf 873379999842277775689999999868996799-99898288999997899----40999447777997-------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) ....++......++++..+.|.... .+...|.++ .+.|+..+. .++..+.. T Consensus 157 --~~~~~pl~~~~~~vvvP~~HpL~~~---------------------~~~i~L~~L----a~~plI~~~--~g~~~r~~ 207 (327) T PRK12680 157 --AGIAVPLYRWRRLVVVPRGHALDTP---------------------RTAPDMAAL----AEHPLISYD--SSTRPGSS 207 (327) T ss_pred --CCEEEEEEECCEEEEEECCCCCCCC---------------------CCCCCHHHH----HCCCEEECC--CCCCHHHH T ss_conf --6547675223579999789810058---------------------999999998----089889638--99867999 Q ss_pred HHHHHCC Q ss_conf 9988513 Q gi|254780707|r 182 LEKKVLQ 188 (346) Q Consensus 182 F~~~v~~ 188 (346) +.+.... T Consensus 208 id~af~~ 214 (327) T PRK12680 208 LQRAFAQ 214 (327) T ss_pred HHHHHHH T ss_conf 9999997 No 53 >COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism] Probab=94.85 E-value=0.24 Score=26.20 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=41.6 Q ss_pred CCCCCHHHHCCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHH Q ss_conf 76789556027987-5036789997078856688999999997498740522027755963489999999 Q gi|254780707|r 267 GIVPSMGTIVSGLY-PISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335 (346) Q Consensus 267 ~v~p~~~~i~~g~Y-Pl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~ 335 (346) +|.|-+.--....+ |++-+.-.+|+..+. ......+|+.|+...+.+. ......+.+|..-+.+.. T Consensus 284 GvaplP~~~~g~~~~pf~Gv~~~~Vsa~sk-n~~~A~~f~~~~t~~~~~~--~~~~~~~~ipa~~~~~~~ 350 (420) T COG2182 284 GVAPLPTLNNGKKPKPFSGVKGYVVSAASK-NKEAAAKFVKYFTNPKNQK--LLYDEAGEIPANKAARND 350 (420) T ss_pred CEEECCCCCCCCCCCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHH T ss_conf 454168778888867665524889648897-6899999999866489999--888755874446775430 No 54 >PRK10797 glutamate and aspartate transporter subunit; Provisional Probab=94.79 E-value=0.25 Score=26.12 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=52.9 Q ss_pred CEEEEEECCHHHHH----------------HHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCC Q ss_conf 67999803425899----------------999999999877--980799981576205789885210133530121332 Q gi|254780707|r 26 NRIRIAGSSTLFPY----------------SKIIAENFSEYF--PEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR 87 (346) Q Consensus 26 ~~I~i~GSst~~P~----------------~~~~a~~y~~~~--~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr 87 (346) .+|+++=-.+-.|| .++++++..++- +++++. .....+..-|..+.+|. +|+.+++- T Consensus 40 G~l~vG~~~~~pPf~~~d~~g~~vGfdvDla~~ia~~l~~~l~~~~~~v~-~v~~~~~~rip~L~~gk----~Di~~~~~ 114 (302) T PRK10797 40 GVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK-LIPITSQNRIPLLQNGT----FDFECGST 114 (302) T ss_pred CEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECC T ss_conf 98999989998997168999985154179999999999877446773499-99757888779997898----08897357 Q ss_pred CCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCC Q ss_conf 02476787676248787246665215412554166654 Q gi|254780707|r 88 KITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVS 125 (346) Q Consensus 88 ~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~ 125 (346) .++++=.+.. .+ ..|.......+++.+++++ T Consensus 115 t~T~eR~k~v------dF-S~pY~~~~~~llv~k~s~I 145 (302) T PRK10797 115 TNNLERQKQA------AF-SDTIFVVGTRLLTKKGGDI 145 (302) T ss_pred CCCHHHHCCE------EE-CCCCEECCEEEEEECCCCC T ss_conf 5697774124------21-4662771468999778866 No 55 >PRK11139 DNA-binding transcriptional activator GcvA; Provisional Probab=94.21 E-value=0.35 Score=25.35 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=46.5 Q ss_pred CCCEEEEEECCH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342-5899999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) .+..++|+=+.+ .......+-..|.+.||++.+. +.... ....+..+. +||+..--+..+. T Consensus 92 ~~g~l~I~~~~~~~~~~l~p~l~~f~~~~P~i~v~-l~~~~---~~~~l~~~~----~Diai~~~~~~~~---------- 153 (295) T PRK11139 92 AKGALTVSLLPSFAIKWLVPRLSSFNEAHPDIDVR-LQAVD---RLEDFLRDD----VDVAIRYGRGNWP---------- 153 (295) T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEE-EEECC---CHHHHHCCC----CEEEEEEECCCCC---------- T ss_conf 78739999963227776334666666108858999-99624---166663347----4389997237767---------- Q ss_pred CCCEEEEEECCCCEEEECCC Q ss_conf 87246665215412554166 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRD 122 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~ 122 (346) .+...++..+.+.++.+++ T Consensus 154 -~l~~~~l~~~~~~~vasp~ 172 (295) T PRK11139 154 -GLRVEKLLDEYLFPVCSPA 172 (295) T ss_pred -CEEEEEEECCEEEEEECHH T ss_conf -6279994044699998879 No 56 >PRK11013 DNA-binding transcriptional regulator LysR; Provisional Probab=93.68 E-value=0.44 Score=24.77 Aligned_cols=121 Identities=9% Similarity=0.029 Sum_probs=69.4 Q ss_pred CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 37679998034258-99999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ..++|+|+.+.++. -++..+...|.+.||++.+. +....+..=.+.+.+|. +|+|....+..+.. T Consensus 92 ~~G~lri~~~~~~~~~~lp~~l~~f~~~~P~v~v~-i~~~~~~~~~~~l~~~~----~Dl~l~~~~~~~~~--------- 157 (309) T PRK11013 92 RQGQLSIACLPVFSQSLLPGLCQPFLARYPDVSLN-IVPQESPLLEEWLSAQR----HDLGLTETLHTPAG--------- 157 (309) T ss_pred CCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEEECCCCCCC--------- T ss_conf 36765653006789886652315678438980799-99898599999997599----77899607889987--------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346) ....++..+..+++...+.|... .+...|.|+. +.|... .+.+++.+..+ T Consensus 158 --~~~~~l~~~~~~~v~~~~hpla~----------------------~~~i~~~dL~----~~~~i~--~~~~~~~r~~~ 207 (309) T PRK11013 158 --TERTELLTLDEVCVLPDGHPLAA----------------------KKVLTPDDFQ----GENFIS--LSRTDSYRQLL 207 (309) T ss_pred --CEEEEEEEEEEEEECCCCCCCCC----------------------CCCCCHHHHC----CCCEEE--CCCCCCHHHHH T ss_conf --57888642014675478980004----------------------9999999973----898696--38999499999 Q ss_pred HHHHCC Q ss_conf 988513 Q gi|254780707|r 183 EKKVLQ 188 (346) Q Consensus 183 ~~~v~~ 188 (346) .+.... T Consensus 208 ~~~~~~ 213 (309) T PRK11013 208 DQLFAE 213 (309) T ss_pred HHHHHH T ss_conf 999997 No 57 >COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Probab=92.92 E-value=0.59 Score=24.08 Aligned_cols=282 Identities=14% Similarity=0.105 Sum_probs=119.5 Q ss_pred CCHHHH---HHHHHHHHHHHHC-CCCCC-CCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHH Q ss_conf 924899---9999999999831-42013-7679998-034258999999999998779807999815762-057898852 Q gi|254780707|r 1 MRFFFV---VLMCFVVLEVYCG-TGTFA-RNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGS-SVGLKEFCR 73 (346) Q Consensus 1 Mk~~~~---~~~~~~~l~~~~~-~~~~a-~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GS-g~Gi~~~~~ 73 (346) ||++.. +++++.+++++.. ..+.+ .+++++. =+....|- +.+.|.+++ ++++ ++....| ......+.. T Consensus 2 ~k~~~~~~~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~~~---~~~~F~k~t-Gi~V-~~~~~~sne~~~ak~~~ 76 (363) T COG0687 2 MKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPA---LLKPFEKET-GIKV-VYDTFDSNEEMLAKLKA 76 (363) T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCCHH---HHHHHHHHH-CCEE-EEECCCCHHHHHHHHHH T ss_conf 414666678999999999860004566257859996478755778---899899998-9979-99538986999999980 Q ss_pred HCCCCCCCEEECCCCCCH-------------HHHHH------H-HHCC---CCCCEEEEEECCCCEEEECCCCCCCCCCH Q ss_conf 101335301213320247-------------67876------7-6248---78724666521541255416665456888 Q gi|254780707|r 74 GIGDDTIDIVNSSRKITQ-------------NELDE------C-KKHG---VSDIQEVTIGHDGILLVSDRDMVSVSLTV 130 (346) Q Consensus 74 G~~~~~~dig~ssr~l~~-------------~E~~~------~-~~~~---~~~~~~~~v~~d~i~i~~n~~~~~~~lt~ 130 (346) |.. ..|+...|-..-. ..+.. . .... ....-.+|.-.+..+++||.+.... T Consensus 77 g~~--~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~---- 150 (363) T COG0687 77 GGG--GYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKD---- 150 (363) T ss_pred CCC--CCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEECEEEEEEEEEEEEECCCCCC---- T ss_conf 899--98879718889999986675675896666482116987835776788886031678864699998000589---- Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHCCC-C-CCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 888876410255555323673023231001-1-12245035448854235789998851345556541011111013660 Q gi|254780707|r 131 EDLYKALASYLIVDDKVVFNPLKKWSEIRP-D-FPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNV 208 (346) Q Consensus 131 ~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~-~-lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~ 208 (346) ..+.++|.++-. . +|...=..+.-.+.........-..+...... ....... T Consensus 151 ------------------~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~-~~~~~~~------- 204 (363) T COG0687 151 ------------------APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNT-TDPEDLK------- 204 (363) T ss_pred ------------------CCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCHHHHH------- T ss_conf ------------------99998899983842002232575301366057899999971899788-9988999------- Q ss_pred HHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCC--CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 001344431024664021166236777631015321--001332001100111001344576789556027987503678 Q gi|254780707|r 209 QQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDV--FGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPL 286 (346) Q Consensus 209 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~--igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~l 286 (346) +. .......+. .+....+..+..+.+....-. .+|.+-.....+ ......+..+.|. .|++-+. - T Consensus 205 ~a-~~~L~~~kp---~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~--~~~~~~i~~~~p~-----eG~~~w~--D 271 (363) T COG0687 205 KA-FDLLDKLKP---VNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKA--AKNGAPIEFVIPK-----EGSILWF--D 271 (363) T ss_pred HH-HHHHHHHCC---CEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHH--CCCCCEEEEECCC-----CCCEEEE--E T ss_conf 99-999997278---50899636278889866997899977778999862--5589805773478-----8734787--8 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHH Q ss_conf 9997078856688999999997498740522027755963489999999 Q gi|254780707|r 287 LFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335 (346) Q Consensus 287 y~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~ 335 (346) ++.+.+... ..++..+|++|++..+.|.. +....||.|--.+.+.. T Consensus 272 ~~~ipk~a~-n~~~A~~fInf~~~pe~~a~--~~~~~~y~~~n~~a~~~ 317 (363) T COG0687 272 NLAIPKGAK-NVDAAYKFINFLLDPEVAAK--LAEFVGYAPPNKAARKL 317 (363) T ss_pred EEEEECCCC-CHHHHHHHHHHHCCHHHHHH--HHHHHCCCCCCHHHHHH T ss_conf 899879999-98999999998519899999--98732678888777754 No 58 >PRK09701 D-allose transporter subunit; Provisional Probab=90.90 E-value=1 Score=22.75 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=53.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHH---HHHHHCCCCEEEEEE--CCCCHHHHHHHHHHC Q ss_conf 924899999999999983142013767999803425899999999---999877980799981--576205789885210 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAE---NFSEYFPEFKTPFVE--SGGSSVGLKEFCRGI 75 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~---~y~~~~~~~~~~~~~--~~GSg~Gi~~~~~G~ 75 (346) ||+++.++..+++..++ ++.++++.+|-+.=.+.-.|++....+ ...+++ ++++.++. +.+.-...-+.++.. T Consensus 1 m~k~~~~~~~~~~~~~~-~~~a~a~~~iavi~k~~~npf~~~~~~Ga~~aAk~~-G~~v~v~~~~~~~D~~~Qi~~Ie~~ 78 (311) T PRK09701 1 MNKYLKYFSGTLVGLML-STSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTL-GVSVDIFASPSEGDFQSQLQLFEDL 78 (311) T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHH-CCEEEEEECCCCCCHHHHHHHHHHH T ss_conf 93699999999999998-887743684999968889989999999999999986-9979999279878999999999999 Q ss_pred CCCCCCEEECCCCCCHH----HHHHHHHCCC Q ss_conf 13353012133202476----7876762487 Q gi|254780707|r 76 GDDTIDIVNSSRKITQN----ELDECKKHGV 102 (346) Q Consensus 76 ~~~~~dig~ssr~l~~~----E~~~~~~~~~ 102 (346) ....+|-=. =.|..+. -++++.+.++ T Consensus 79 I~~gvdaIi-i~p~d~~a~~~~i~~A~~aGI 108 (311) T PRK09701 79 SNKNYKGIA-FAPLSSVNLVMPVARAWKKGI 108 (311) T ss_pred HHCCCCEEE-EECCCHHHHHHHHHHHHHCCC T ss_conf 975999999-918987788999999997799 No 59 >COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism] Probab=89.93 E-value=1.2 Score=22.26 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=43.4 Q ss_pred CCHHHHHHHHHH-HHHHHHCCCCCCC-CEEEEEECC----HHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHH Q ss_conf 924899999999-9999831420137-679998034----2589999999999987798-07999815762057898852 Q gi|254780707|r 1 MRFFFVVLMCFV-VLEVYCGTGTFAR-NRIRIAGSS----TLFPYSKIIAENFSEYFPE-FKTPFVESGGSSVGLKEFCR 73 (346) Q Consensus 1 Mk~~~~~~~~~~-~l~~~~~~~~~a~-~~I~i~GSs----t~~P~~~~~a~~y~~~~~~-~~~~~~~~~GSg~Gi~~~~~ 73 (346) |+++.....+++ +++++++..+.+. .+++..-.. ...-.+..+++.-.++.+| +++. +-+.|+=++=++.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~p~~~~~~~fa~~v~ekt~G~l~i~-vfP~~qLG~~~~~ie 79 (332) T COG1638 1 MMKLLALLLALLLAAAALASAAAAAGALVLRFSHVTPEGHPKGKAAKKFAELVEEKTGGRLKIE-VFPNSQLGGEAEMIE 79 (332) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCHHHHHH T ss_conf 9513789999999999977778740154887523579988078999999999998719938999-766756687699999 Q ss_pred HCCCCCCCEEECCCC Q ss_conf 101335301213320 Q gi|254780707|r 74 GIGDDTIDIVNSSRK 88 (346) Q Consensus 74 G~~~~~~dig~ssr~ 88 (346) ++..+.+||+..|-. T Consensus 80 ~l~~G~id~~~~s~~ 94 (332) T COG1638 80 QLRSGTLDIGVVSLG 94 (332) T ss_pred HHHCCCCEEEECCCH T ss_conf 996597307850652 No 60 >COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane] Probab=89.63 E-value=1.3 Score=22.13 Aligned_cols=57 Identities=16% Similarity=-0.060 Sum_probs=33.3 Q ss_pred CCCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHHCCCCC Q ss_conf 01376799980342589-999999999987798079998157620-57898852101335 Q gi|254780707|r 22 TFARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSS-VGLKEFCRGIGDDT 79 (346) Q Consensus 22 ~~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg-~Gi~~~~~G~~~~~ 79 (346) +.+..+|+|++=.+.-+ +.-.+....-+.| +.++......|+. .=++++.+|..+-. T Consensus 29 ~~~~~~I~VgsK~~tE~~IL~~m~~~lle~~-~~kv~~~~~lG~t~v~~~Al~~G~IDiY 87 (300) T COG1732 29 ASAAKTIVVGSKIFTEQYILGNILKQLLEKN-GIKVEDKTGLGGTAVVRNALKSGDIDIY 87 (300) T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCCCEE T ss_conf 2357887983477838899999999999865-9914541688852999999975987768 No 61 >TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate. Probab=89.00 E-value=1.5 Score=21.86 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=34.4 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCC Q ss_conf 1376799980342589-99999999998779807999815762057898852101335301213320 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRK 88 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~ 88 (346) ....+|+++.+.++.. +...+...|.+.||++.+..+ .+-+ ...+..+. +|++..-.+ T Consensus 86 ~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~v~l~-~~~~---~~~~~~~~----~Dlai~~~~ 144 (291) T TIGR03418 86 REHETLTLATDFAFATYWLMPRLHRFKRAMPDVDVSLV-TSQD---SLDPQRDD----IDVAILFGD 144 (291) T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEE-ECCC---HHHHHCCC----CCEEEEECC T ss_conf 66782488514388777756876789986898079999-5474---04543278----738999647 No 62 >PRK09508 leuO leucine transcriptional activator; Reviewed Probab=88.91 E-value=1.5 Score=21.83 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=66.8 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ....+++|+-++.+.. +...+...|.+.+|++.+. +....+......+.+|. +||+....+..+. T Consensus 109 ~~~~~~~i~~~~~~~~~llp~ll~~~~~~~P~v~l~-~~~~~~~~~~~~L~~g~----iDl~I~~~~~~~~--------- 174 (314) T PRK09508 109 SSERVFNLCICSPLDNRLASQIYNRIEQIAPNIHLV-FKSSLNQNIEHQLRYQE----TEFVISYEEFDRP--------- 174 (314) T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCC--------- T ss_conf 047369999630789999999999999868997799-98577064999997699----5299967877998--------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCC--CCHHHH Q ss_conf 78724666521541255416665456--888888 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVS--LTVEDL 133 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~--lt~~~l 133 (346) .+...++..|..+++..++.|... ++.+++ T Consensus 175 --~~~~~~L~~d~~v~v~~~~HP~~~~~lt~~~~ 206 (314) T PRK09508 175 --EFTSVPLFKDELVLVASKNHPRIKGPILEEQL 206 (314) T ss_pred --CCEEEEEEECCEEEEECCCCCCCCCCCCHHHH T ss_conf --73489997246499982999767899999999 No 63 >PRK03095 prsA peptidylprolyl isomerase; Reviewed Probab=86.82 E-value=2 Score=21.09 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=28.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CHHHHHHHHHHHHH Q ss_conf 924899999999999983142013767999803-42589999999999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS-STLFPYSKIIAENF 47 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS-st~~P~~~~~a~~y 47 (346) ||+.++.+.+++++++.+|++......++..|. =|..-++..+-+.+ T Consensus 1 MKK~~la~~~~svl~LaaC~~~~~~~vat~kgg~IT~~e~y~~~k~~~ 48 (287) T PRK03095 1 MKKAMLALAATSVIALSACGTSSSDKIVTSKAGDITKDEFYEQMKTQA 48 (287) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH T ss_conf 907899999999999985168998758984698272999999999888 No 64 >PRK05137 tolB translocation protein TolB; Provisional Probab=86.11 E-value=0.9 Score=23.06 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=30.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CHHHH Q ss_conf 924899999999999983142013767999803-42589 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS-STLFP 38 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS-st~~P 38 (346) ||.++..++++++++++++.++.|+-.|.|.+. ....| T Consensus 1 ~~~~~~~~~l~l~l~l~~~~~A~A~L~IeIt~g~~~~ip 39 (437) T PRK05137 1 MRLLLSALALALALALLAAQPARALLRIDITKGNVEPLP 39 (437) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC T ss_conf 910588999999999873121431399999467677335 No 65 >PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Probab=82.94 E-value=3.1 Score=20.06 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=59.9 Q ss_pred CCHHHHHHHH----HHHHHHHHCCCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC Q ss_conf 9248999999----999999831420-13767999803425899999999999877980799981576205789885210 Q gi|254780707|r 1 MRFFFVVLMC----FVVLEVYCGTGT-FARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGI 75 (346) Q Consensus 1 Mk~~~~~~~~----~~~l~~~~~~~~-~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~ 75 (346) |++.+..+++ ++++++++|++. ....+|+++=+...+--+...+..-.++.-|.++.+++=..--.==.++.+|. T Consensus 1 m~~~~k~~~~~~~l~~~l~l~gCg~~~~~~~~ikVG~~~gp~~ei~e~~~~~~~ek~G~~veiv~FsDy~~pN~AL~~G~ 80 (271) T PRK11063 1 MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGD 80 (271) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCC T ss_conf 96029999999999999975005898567981899846898799999988888860797689999368321558986798 Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 13353012133202476787676248787246665215412554166654568888888764102555553236730232 Q gi|254780707|r 76 GDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKW 155 (346) Q Consensus 76 ~~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W 155 (346) +|.-. -.+..=++...+.....++ .++. ++..+. .+|..++++. T Consensus 81 ----iDaN~---fQH~~yL~~~nk~~g~~L~--~v~~-----~~~~P~----------------------glYS~K~ksl 124 (271) T PRK11063 81 ----IDANA---FQHKPYLDQQIKDRGYKLV--AVGN-----TFVYPI----------------------AGYSKKIKSL 124 (271) T ss_pred ----CCHHH---HHCHHHHHHHHHHCCCCEE--EEEE-----EEEEEE----------------------EEEECCCCCH T ss_conf ----44234---5579999999997799579--9866-----778415----------------------8642365886 Q ss_pred HHCCCCCCCCCCEEECCCCCCCHHHH Q ss_conf 31001112245035448854235789 Q gi|254780707|r 156 SEIRPDFPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 156 ~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346) .|+ |+... +..|+|.|..... T Consensus 125 ~el----p~Ga~-IaIPND~sN~~RA 145 (271) T PRK11063 125 DEL----QDGSQ-VAVPNDPTNLGRS 145 (271) T ss_pred HHC----CCCCE-EEECCCCCHHHHH T ss_conf 475----69999-9804885609999 No 66 >COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Probab=82.44 E-value=3.2 Score=19.95 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=43.0 Q ss_pred CCEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHH Q ss_conf 767999803--42589999999999987798079998157620578988521013353012133202476 Q gi|254780707|r 25 RNRIRIAGS--STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQN 92 (346) Q Consensus 25 ~~~I~i~GS--st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~ 92 (346) ..++.+... .--.|++.+..+.|-++++-.++..++..+...-...+..|. +|+|...-+.... T Consensus 30 ~~~~~~~~~~~~~~~~~~va~~kG~f~~~Gl~~V~~~~~~~~~~~~~~l~~G~----~D~a~~~~~~~~~ 95 (335) T COG0715 30 KVTILLGWLPNPDHAPLYVAKEKGFFKKEGLDDVELVEFTGGAPVLEALAAGA----LDFAVYYTGDTPL 95 (335) T ss_pred CEEEEEEEECCHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCHHHHHHHHCCC----CCEEEECCCCHHH T ss_conf 06999743337028999999978917774997589970798457999997699----8887423785599 No 67 >pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis. Probab=81.65 E-value=1.8 Score=21.38 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=24.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC---CEEEEE Q ss_conf 9248999999999999831420137---679998 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR---NRIRIA 31 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~---~~I~i~ 31 (346) ||++...+++++++.+++..++.|. ++|++. T Consensus 1 m~~~~~~~l~~~~~l~~~~~~a~A~~~~sTvS~G 34 (199) T pfam06316 1 MRKLCAAILSAAICLAAAGTPASAAEHQSTLSAG 34 (199) T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEC T ss_conf 9017789999999999727731121478668622 No 68 >PRK10355 xylF D-xylose transporter subunit XylF; Provisional Probab=80.31 E-value=3.9 Score=19.52 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=49.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCHHHHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHCC Q ss_conf 92489999999999998314201376799980--34258999999999998--779807999815762057898852101 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG--SSTLFPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGIG 76 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~G--Sst~~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~~ 76 (346) ||++.+++++++++++..++ +++. .++|+- .+.-.|++....+.+++ +.-++++.+..+.+.......-++... T Consensus 1 mk~k~~~~~~~~~~~~~~~~-a~a~-~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~dA~~D~~~Qi~qIe~~I 78 (330) T PRK10355 1 MKIKNILLTLCAALLLTSVA-AHAK-EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI 78 (330) T ss_pred CCHHHHHHHHHHHHHHHCCH-HHHC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 96689999999999984461-1213-867999906888868999999999999975998999718999899999999999 Q ss_pred CCCCCEE---ECCCCCCHHHHHHHHHCCC Q ss_conf 3353012---1332024767876762487 Q gi|254780707|r 77 DDTIDIV---NSSRKITQNELDECKKHGV 102 (346) Q Consensus 77 ~~~~dig---~ssr~l~~~E~~~~~~~~~ 102 (346) ...+|.= ..|..--..-++++...++ T Consensus 79 ~qgvdaIiv~p~D~~al~~~v~~A~~aGI 107 (330) T PRK10355 79 NRGVDVLVIIPYNGQVLSNVIKEAKQEGI 107 (330) T ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHCCC T ss_conf 85999999969987888999999998799 No 69 >PRK10653 D-ribose transporter subunit RbsB; Provisional Probab=76.71 E-value=5 Score=18.90 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=49.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH---HHHCCCCEEEEEECCCCHHHHHHHHHHCCC Q ss_conf 92489999999999998314201376799980342589999999999---987798079998157620578988521013 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF---SEYFPEFKTPFVESGGSSVGLKEFCRGIGD 77 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y---~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~ 77 (346) ||++..+ ++.+.++++.+..+.+.+||=+.=.+.-.||+..+.+.. .+++ |.++.+..+.++..-....++-... T Consensus 3 ~~k~~~~-~~~~~~~~~~~a~a~a~~TIgvivp~i~npff~~v~~gie~~a~~~-Gy~l~v~~s~~d~~~q~~~i~~li~ 80 (295) T PRK10653 3 MKKLATL-VSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVVLDSQNNPAKELANVQDLTV 80 (295) T ss_pred HHHHHHH-HHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 0799999-9999876521217752997999948987979999999999999976-9989998399999999999999997 Q ss_pred CCCCEEE Q ss_conf 3530121 Q gi|254780707|r 78 DTIDIVN 84 (346) Q Consensus 78 ~~~dig~ 84 (346) ..+|.-. T Consensus 81 ~~vdgii 87 (295) T PRK10653 81 RGTKILL 87 (295) T ss_pred CCCCEEE T ss_conf 6998899 No 70 >PRK09934 putative fimbrial protein; Provisional Probab=70.64 E-value=6 Score=18.45 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=20.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCH Q ss_conf 9248999999999999831420137--6799980342 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR--NRIRIAGSST 35 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~--~~I~i~GSst 35 (346) |||+++.+++.+++...+. ++.+. .+|+..|+=. T Consensus 1 mkk~~l~~~~~l~~~~~~~-aa~~~g~g~i~F~G~I~ 36 (171) T PRK09934 1 MRRVFIAIFCGLLWSPLSQ-AASPLGEINIELRGNVV 36 (171) T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEEE T ss_conf 9268999999999863442-11358805899999998 No 71 >PRK09408 ompX outer membrane protein X; Provisional Probab=70.15 E-value=5.8 Score=18.56 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=23.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 92489999999999998314201376799980 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG 32 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~G 32 (346) ||+...+.+++.+|++.+..+.++..++++.= T Consensus 1 mkk~~~~s~~~~~~~~~a~~a~A~~sTvS~GY 32 (171) T PRK09408 1 MKKIACLSALAAVLAFTAGTAVAATSTVTGGY 32 (171) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 92247899999998856666642576698788 No 72 >COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=67.23 E-value=8.5 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=16.3 Q ss_pred CCCCCCHHHHHHHHHHHHCC Q ss_conf 96348999999999999607 Q gi|254780707|r 324 GLIPISNEERKSVRDSIAVG 343 (346) Q Consensus 324 GyvPLp~~~~~~~~~~~~~~ 343 (346) +|+|..++.++.+|+..... T Consensus 275 ~~~~~~~~~y~~i~~~~~~~ 294 (299) T COG3221 275 GFVEVRDDDYKPIRDAVKEL 294 (299) T ss_pred CEEECCHHHHHHHHHHHHHH T ss_conf 62304666779999999986 No 73 >PRK10959 outer membrane protein W; Provisional Probab=65.39 E-value=6.2 Score=18.41 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=19.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH Q ss_conf 92489999999999998314201376799980342589 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP 38 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P 38 (346) |||+.+..+++.++....+.++.+-+-+.-.|...+.| T Consensus 1 Mkk~~~a~~~~~a~~s~~A~A~~aGd~~vr~g~~~V~P 38 (212) T PRK10959 1 MKKLTVAALAVATLLSGSAFAHEAGDFIVRAGAATVRP 38 (212) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC T ss_conf 93789999999987516778832799899966899834 No 74 >PRK10796 LPS-assembly lipoprotein RlpB; Provisional Probab=65.09 E-value=9.4 Score=17.39 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=38.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC--------CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 924899999999999983142013--------76799980342589999999999987798079 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFA--------RNRIRIAGSSTLFPYSKIIAENFSEYFPEFKT 56 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a--------~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~ 56 (346) ||+++.+++.++++..+.|+-..- -.++.+..+..-.|+...+-+++... ++++ T Consensus 1 ~r~l~~l~l~lavll~agCGFhLRg~~~lP~~l~tL~l~S~Dpys~Ltr~vr~qLr~~--gV~l 62 (196) T PRK10796 1 MRYLATLLLSLAVLVTAGCGWHLRGTTQVPSEMKTMILDSGDPNGPLSRAVRNQLRLN--GVEL 62 (196) T ss_pred CHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEE T ss_conf 9569999999999997476715768999986444589980487867999999999877--9589 No 75 >pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing. Probab=64.06 E-value=4.9 Score=18.96 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=19.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC Q ss_conf 9248999999999999831420137679998034 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS 34 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs 34 (346) ||+++.++++++.+.+..+++ |++...|-. T Consensus 1 Mk~~~~~~~~l~~~~~~lagC----NTv~G~G~D 30 (42) T pfam08085 1 MKKLIALLLALLLLALVLAGC----NTVAGAGKD 30 (42) T ss_pred CHHHHHHHHHHHHHHHHHHCC----HHHHHCCHH T ss_conf 923699999999999998612----221112163 No 76 >PRK04405 prsA peptidylprolyl isomerase; Provisional Probab=63.15 E-value=8.8 Score=17.55 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=15.4 Q ss_pred CCHHHHHHHHHHH-HHHHHCCCCCCCCEEEEEECC Q ss_conf 9248999999999-999831420137679998034 Q gi|254780707|r 1 MRFFFVVLMCFVV-LEVYCGTGTFARNRIRIAGSS 34 (346) Q Consensus 1 Mk~~~~~~~~~~~-l~~~~~~~~~a~~~I~i~GSs 34 (346) ||++++.++++++ +++.+|++ .....++..|.+ T Consensus 5 MKK~~l~~~~~~~~l~LaaCss-~~~~Vat~kg~~ 38 (298) T PRK04405 5 MKKWALAAASAGLLLSLAGCSS-NNKTVATYKGGK 38 (298) T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCC T ss_conf 8999999999999999987179-997699863987 No 77 >PRK13486 bifunctional enterobactin receptor/adhesin protein; Provisional Probab=62.60 E-value=10 Score=17.12 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH-------------------HHHHHHHHCCCCEEEEEEC Q ss_conf 924899999999999983142013767999803425899999-------------------9999998779807999815 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKI-------------------IAENFSEYFPEFKTPFVES 61 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~-------------------~a~~y~~~~~~~~~~~~~~ 61 (346) ||...+..+.+..|++.+.....+.++|.+.++-+-.|+.+. +.|.. +.-|++.+ .+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vvVTatr~~~~l~d~p~sVsVIt~e~I~~~~~~~l~d~L-~~~PGv~v--~~~ 77 (696) T PRK13486 1 MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAASVSVISQEELQSSQYHDLAEAL-RSVEGVDV--ESG 77 (696) T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHCCCCEEEECHHHHHHHCCCCHHHHH-HHCCCEEE--ECC T ss_conf 961478999998753203443456884999016861677888986699899999762878899998-64899599--467 Q ss_pred CCCHHHHHHHHHHC Q ss_conf 76205789885210 Q gi|254780707|r 62 GGSSVGLKEFCRGI 75 (346) Q Consensus 62 ~GSg~Gi~~~~~G~ 75 (346) .|.+.+..-.+.|. T Consensus 78 ~g~~~~~~i~iRG~ 91 (696) T PRK13486 78 TGKTGGLEISIRGM 91 (696) T ss_pred CCCCCCCEEEEECC T ss_conf 78678633999377 No 78 >PRK04922 tolB translocation protein TolB; Provisional Probab=60.42 E-value=11 Score=16.90 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=24.2 Q ss_pred CCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEE-CCHHHHH Q ss_conf 92489999999999998314-201376799980-3425899 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGT-GTFARNRIRIAG-SSTLFPY 39 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~-~~~a~~~I~i~G-Sst~~P~ 39 (346) ||++.+.+.++++++++... ++.|+-+|.|.| .....|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~a~a~L~IeIt~G~~~~~pI 41 (439) T PRK04922 1 MKKPLRWLAALTALLLPLSALAQQQGLTIDIVGGSASATPI 41 (439) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEE T ss_conf 96168999999999998778861683699993577770506 No 79 >PRK01742 tolB translocation protein TolB; Provisional Probab=58.43 E-value=11 Score=17.05 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=24.4 Q ss_pred CCHHHHHHHHHHHHHHH-HCCCCCCCCEEEEE-ECCHHHHHH Q ss_conf 92489999999999998-31420137679998-034258999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVY-CGTGTFARNRIRIA-GSSTLFPYS 40 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~-~~~~~~a~~~I~i~-GSst~~P~~ 40 (346) ||.+..++.++++++++ ++..+.++-.|.|. |.....|++ T Consensus 1 m~m~~~~~~~~~~l~~~~~~~~a~a~L~I~It~G~~~~~pIA 42 (430) T PRK01742 1 MKLLKRLVSVFAVLFAVISNAFAGDEVRIVIDEGVDGARPIA 42 (430) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE T ss_conf 916999999999999998778505755999945767740459 No 80 >PRK11087 hypothetical protein; Provisional Probab=57.44 E-value=13 Score=16.69 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=20.6 Q ss_pred CCHHHHHHHHHHHHHHH-HCCCCCCC-----CEEEEEECCHH Q ss_conf 92489999999999998-31420137-----67999803425 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVY-CGTGTFAR-----NRIRIAGSSTL 36 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~-~~~~~~a~-----~~I~i~GSst~ 36 (346) ||...+.+..++.|+.+ .+.+..+. -+|++.|+.++ T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~p~~p~ItVtG~g~v 42 (238) T PRK11087 1 MKLKVLALAALLGLSASLLAMAAQAAELPDFPHIVTSGTASV 42 (238) T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEEEE T ss_conf 930499999999987766324344347999987999989999 No 81 >PRK03629 tolB translocation protein TolB; Provisional Probab=56.19 E-value=9.8 Score=17.27 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=23.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHHH Q ss_conf 9248999999999999831420137679998-034258999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPYS 40 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~~ 40 (346) ||+++.++++++.++... +.|+-.|.|. |.....|+. T Consensus 1 mk~~~~~~f~~lll~~~~---a~A~L~I~It~G~~~~~PIA 38 (430) T PRK03629 1 MKQALRVAFGFLILWASV---LHAEVRIEITQGVDSARPIG 38 (430) T ss_pred CCHHHHHHHHHHHHHHHH---HCEEEEEEEECCCCCCCCEE T ss_conf 901488899899987544---22379999934667732569 No 82 >pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.). Probab=55.92 E-value=4.2 Score=19.31 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=19.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH Q ss_conf 92489999999999998314201376799980342589 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP 38 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P 38 (346) ||+.+.+++.++.+.+.+|.. |.|+=.+-.|+.| T Consensus 1 Mkki~~~~i~~~~~~L~aCQa----NyiRDvqGGtVaP 34 (46) T pfam02402 1 MKKILFIGILLLTVLLSACQA----NYIRDVQGGTVAP 34 (46) T ss_pred CCEEEEHHHHHHHHHHHHHHH----HHEEECCCCEECC T ss_conf 924201399999999998555----0412256852778 No 83 >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696 Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport. Probab=53.92 E-value=12 Score=16.83 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=45.3 Q ss_pred HHHHHHH-HHHHHHHHHCCCCCCCCEEEEEECCHHHH----------HHHHHHHHHHHHCCCCE----EEEEECCCCHHH Q ss_conf 4899999-99999998314201376799980342589----------99999999998779807----999815762057 Q gi|254780707|r 3 FFFVVLM-CFVVLEVYCGTGTFARNRIRIAGSSTLFP----------YSKIIAENFSEYFPEFK----TPFVESGGSSVG 67 (346) Q Consensus 3 ~~~~~~~-~~~~l~~~~~~~~~a~~~I~i~GSst~~P----------~~~~~a~~y~~~~~~~~----~~~~~~~GSg~G 67 (346) |...+|+ ++++|.+.+..+.+|...|+|.|..++.| .-.++.+.|=+++.-|+ .++|..+.-+.= T Consensus 20 Fs~l~I~P~~lLLv~~~lFs~fAkkEivi~~~g~~~p~~~~~~iQst~n~~I~~N~L~Enk~VKKG~~Lv~y~~~~~~~~ 99 (476) T TIGR01000 20 FSTLVIVPIFLLLVFLVLFSLFAKKEIVIRSTGSIEPAKVIAKIQSTSNNAIKENYLKENKFVKKGDLLVVYTNTNEENQ 99 (476) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCCEEECCCEEEEEECCHHHHH T ss_conf 12689999999999999972201078898411266143201212288421456513320978833878999717435778 Q ss_pred HHHH Q ss_conf 8988 Q gi|254780707|r 68 LKEF 71 (346) Q Consensus 68 i~~~ 71 (346) -+.+ T Consensus 100 ~~~~ 103 (476) T TIGR01000 100 KQEL 103 (476) T ss_pred HHHH T ss_conf 9999 No 84 >PRK11627 hypothetical protein; Provisional Probab=52.82 E-value=15 Score=16.30 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=15.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 9248999999999999831420137679998 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA 31 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~ 31 (346) ||+++..++++++|+.|+. ..++|.+. T Consensus 2 mkk~~~~l~a~~lL~gCas----~p~~l~l~ 28 (192) T PRK11627 2 LKKILFPLVALFMLAGCAT----PPTTLEVS 28 (192) T ss_pred HHHHHHHHHHHHHHHHHCC----CCCEEEEC T ss_conf 2879999999999986069----97637867 No 85 >pfam07996 T4SS Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries. Probab=51.41 E-value=16 Score=16.04 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=20.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC Q ss_conf 9248999999999999831420137679998034 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS 34 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs 34 (346) ||+ .++.+++++.++++.++++.+.-.+++++ T Consensus 1 Mkk--~~~~~~~~~~l~~~~~a~a~GIPV~D~a~ 32 (217) T pfam07996 1 MKK--KLIILALALALLAASPAAAAGIPVVDAAS 32 (217) T ss_pred CCH--HHHHHHHHHHHHCCCHHHCCCCCEECCHH T ss_conf 933--79999999998477777608998103413 No 86 >PRK11074 putative DNA-binding transcriptional regulator; Provisional Probab=51.24 E-value=16 Score=16.02 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=51.3 Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248 Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346) Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346) ..+.+++|+-+.++.+ ++..+-..|.+.||++.+. +...-+..-...+.+|. +|++.......+.. T Consensus 89 ~~~G~lri~~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dlai~~~~~~p~~-------- 155 (300) T PRK11074 89 GWRGQLSIALDNIVRPDRTRQLIADFYRHFDDVELI-IRQEVFNGVWDALADGR----ADIAIGATRAIPVG-------- 155 (300) T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CCEEEECCCCCCCC-------- T ss_conf 984259998653357899999999999988695799-99766367999997699----77899437677888-------- Q ss_pred CCCCEEEEEECCCCEEEECCCCCC Q ss_conf 787246665215412554166654 Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVS 125 (346) Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~ 125 (346) ..+...+++....++++.++.|. T Consensus 156 -~~~~~~~l~~~~~~~v~~~~hpL 178 (300) T PRK11074 156 -GRFAFRDMGMLSWAFVVSSDHPL 178 (300) T ss_pred -CCEEEEECCCCEEEEEECCCCHH T ss_conf -86578881442056674589755 No 87 >pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria. Probab=50.57 E-value=17 Score=15.96 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=41.5 Q ss_pred HHHHHHHHHHHCCCCEEEEEE-CCCCH-HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC---CCCE-EEEEECC Q ss_conf 999999999877980799981-57620-5789885210133530121332024767876762487---8724-6665215 Q gi|254780707|r 40 SKIIAENFSEYFPEFKTPFVE-SGGSS-VGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV---SDIQ-EVTIGHD 113 (346) Q Consensus 40 ~~~~a~~y~~~~~~~~~~~~~-~~GSg-~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~---~~~~-~~~v~~d 113 (346) .+.+++..++..+. .+++.. ++|+| -|...+.+-.-+++ .+...+.++.-...- ...... .++. -..+..+ T Consensus 2 AR~~a~~l~~~lG~-~vvV~N~pGagG~ig~~~v~~a~~DGy-Tl~~~~~~~~~~~~~-~~~~~~~~~~df~pia~~~~~ 78 (274) T pfam03401 2 ARALAQGMSKQLGQ-PVIVENKPGAGGIIGADAVAKAAPDGY-TILLGSTGLAVAPHL-YPNLPYDPIKDFTPVSLLATS 78 (274) T ss_pred HHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHCCCCCC-EEEEECCHHHHHHHH-HCCCCCCCHHHHHHHHHHHCC T ss_conf 78999999998699-879996698306999999980899998-899946789876888-434788708876758865016 Q ss_pred CCEEEECCCCCCCCCCHHHHHH Q ss_conf 4125541666545688888887 Q gi|254780707|r 114 GILLVSDRDMVSVSLTVEDLYK 135 (346) Q Consensus 114 ~i~i~~n~~~~~~~lt~~~l~~ 135 (346) ..+++++++.+.. |.+++.. T Consensus 79 ~~~l~v~~dsp~~--t~~dli~ 98 (274) T pfam03401 79 PMVLVVPADSPFK--TLQELVA 98 (274) T ss_pred CEEEEECCCCCCC--CHHHHHH T ss_conf 3588977999756--8999999 No 88 >PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Probab=50.51 E-value=17 Score=15.96 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=43.7 Q ss_pred CEEEEEECCHHHHHH-------------HHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCC Q ss_conf 679998034258999-------------9999999987--7980799981576205789885210133530121332024 Q gi|254780707|r 26 NRIRIAGSSTLFPYS-------------KIIAENFSEY--FPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKIT 90 (346) Q Consensus 26 ~~I~i~GSst~~P~~-------------~~~a~~y~~~--~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~ 90 (346) .+|+++=+...-|+. --++.+..+. ..++++. ..+.....=+..+.+|. +|+.+++-.++ T Consensus 38 G~L~vg~~~~~pPf~~~d~~~g~~~GfDvDla~~iAk~llg~~~~v~-~v~~~~~~~~p~L~~gk----vD~i~~~~tiT 112 (259) T PRK11917 38 GQLIVGVKNDVPHYALLDQATGEIKGFEIDVAKLLAKSILGDDKKIK-LVAVNAKTRGPLLDNGS----VDAVIATFTIT 112 (259) T ss_pred CEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCCEEE-EEEECHHHHHHHHHCCC----EEEEEECCCCC T ss_conf 98999987897886205679996788879999999999659985699-99706787768987798----55998664767 Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCEEEECCCC Q ss_conf 767876762487872466652154125541666 Q gi|254780707|r 91 QNELDECKKHGVSDIQEVTIGHDGILLVSDRDM 123 (346) Q Consensus 91 ~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~ 123 (346) ++=.+.. .+ ..|.......+++.+++ T Consensus 113 ~eR~k~v------dF-S~PY~~~~~~ilv~k~~ 138 (259) T PRK11917 113 PERKRIY------NF-SEPYYQDAIGLLVLKEK 138 (259) T ss_pred CCHHCCE------EE-CCCEEEEEEEEEEECCC T ss_conf 6543057------62-24769965599998999 No 89 >pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence. Probab=49.49 E-value=12 Score=16.74 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=17.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 92489999999999998314201 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTF 23 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~ 23 (346) |||+++.++++.++++..|++-. T Consensus 1 MKk~~l~~~i~SAL~LaGCg~~s 23 (269) T pfam12262 1 MKKKFLALLLASALLLAGCGDDT 23 (269) T ss_pred CCHHHHHHHHHHHHHHCCCCCCC T ss_conf 92479999999986411157996 No 90 >PRK00178 tolB translocation protein TolB; Provisional Probab=48.85 E-value=18 Score=15.81 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=20.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHH Q ss_conf 9248999999999999831420137679998034-25899 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS-TLFPY 39 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs-t~~P~ 39 (346) |+++..++++++++ +++..+.|+-.|.|.+.. ...|+ T Consensus 1 m~~l~~~~~l~~~l--~~~~~a~A~l~I~It~g~~~~ipI 38 (433) T PRK00178 1 MIKLKRIALLVLCL--LAGGAAAAELNIEITSGSDRAIPI 38 (433) T ss_pred CCCHHHHHHHHHHH--HHHHHHCEEEEEEEECCCCCEEEE T ss_conf 90179999999999--876762203999993477760406 No 91 >PRK12450 foldase protein PrsA; Reviewed Probab=48.32 E-value=18 Score=15.76 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=14.1 Q ss_pred CCHHHHHHHH-HHHHHHHHCCCCCC-CCEEEEEEC Q ss_conf 9248999999-99999983142013-767999803 Q gi|254780707|r 1 MRFFFVVLMC-FVVLEVYCGTGTFA-RNRIRIAGS 33 (346) Q Consensus 1 Mk~~~~~~~~-~~~l~~~~~~~~~a-~~~I~i~GS 33 (346) ||++++.++. ++++++.+|++... ...++..|. T Consensus 4 mKK~~~~~~~~~svl~LaAC~s~~~~~~v~t~kgg 38 (309) T PRK12450 4 MNKLITGVVTLATVVTLSACQSSHNNTKLVSMKGD 38 (309) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 99999999999999999860589998368983599 No 92 >PRK11622 putative ABC transporter solute-binding protein; Provisional Probab=47.66 E-value=19 Score=15.70 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=42.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC----------CCC-CEEEE---EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH Q ss_conf 9248999999999999831420----------137-67999---803425899999999999877980799981576205 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGT----------FAR-NRIRI---AGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSV 66 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~----------~a~-~~I~i---~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~ 66 (346) ||++..++.+++++++..+.+. .|+ +++.- .||..+.-+++-++++.++++ ++.+.-|--..... T Consensus 2 ~r~~~~~~~~l~~~~~~~~~~~~~~~W~~i~~~A~GqtV~f~aWGGs~~iN~yi~w~~~~l~~~y-~ItL~~Vk~~Dt~~ 80 (401) T PRK11622 2 MRHLLALLGLLALLSLAAAASDAANTWQQILEEAKGQTVYFNAWGGSPAINRYLDWVAKELKERY-GITLKHVKLADIAE 80 (401) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCCHHH T ss_conf 58899999999987501457644489999999716988999976795777599999999999985-96689952545899 Q ss_pred HHHHHHHH Q ss_conf 78988521 Q gi|254780707|r 67 GLKEFCRG 74 (346) Q Consensus 67 Gi~~~~~G 74 (346) -+++++.- T Consensus 81 av~rvlaE 88 (401) T PRK11622 81 AVNRLLAE 88 (401) T ss_pred HHHHHHHH T ss_conf 99999999 No 93 >COG5510 Predicted small secreted protein [Function unknown] Probab=47.37 E-value=12 Score=16.82 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=16.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC Q ss_conf 924899999999999983142013767999803 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS 33 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS 33 (346) ||+..+++.++++.++....+ |+.+..|- T Consensus 2 mk~t~l~i~~vll~s~llaaC----NT~rG~G~ 30 (44) T COG5510 2 MKKTILLIALVLLASTLLAAC----NTMRGAGK 30 (44) T ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHCCCH T ss_conf 048999999999999999886----63002236 No 94 >PRK10259 hypothetical protein; Provisional Probab=46.51 E-value=20 Score=15.60 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=31.1 Q ss_pred CCHHHHHHHHHHHHHHHHCC-CC---C--------CCCEEEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 92489999999999998314-20---1--------3767999803425899999999999877 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGT-GT---F--------ARNRIRIAGSSTLFPYSKIIAENFSEYF 51 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~-~~---~--------a~~~I~i~GSst~~P~~~~~a~~y~~~~ 51 (346) ||.+..++.++++..+.+.. ++ . ...+|+..|++++--+-.++++.=.+.- T Consensus 1 MK~ik~~~aa~aLs~~SFgsfAA~~v~~~qa~~l~~iG~VSa~gA~tL~~Le~~LA~KA~~aG 63 (86) T PRK10259 1 MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAG 63 (86) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC T ss_conf 914899999999998226765414146322125665279982488886899999999999748 No 95 >PRK13484 putative iron-regulated outer membrane virulence protein; Provisional Probab=46.43 E-value=18 Score=15.78 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=26.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC-----CEEEEEECCHHHHHH Q ss_conf 9248999999999999831420137-----679998034258999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR-----NRIRIAGSSTLFPYS 40 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~-----~~I~i~GSst~~P~~ 40 (346) ||..+.+..++++++.++..++.|+ +.|.+..+-+..|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~vvVTAtr~~~~l~ 45 (682) T PRK13484 1 MKNKYIIAPGIAVMCSAVISSGYASSDKKEDTLVVTASGFTQQLR 45 (682) T ss_pred CCCEEHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCCCCCHH T ss_conf 972124899999999887553545222688749992158736877 No 96 >COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism] Probab=45.30 E-value=21 Score=15.49 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=18.2 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCHHHCC Q ss_conf 9970788566889999999974987405 Q gi|254780707|r 288 FYVKRQHFNSVLGLREYVSFSVSDEMMA 315 (346) Q Consensus 288 ~yv~~~~~~~~~~~~~Fl~~~ls~~~~~ 315 (346) +.++.. ....+.+++++.-+-|++-+. T Consensus 228 ivvr~~-d~d~~~ik~lv~a~qs~evk~ 254 (268) T COG1464 228 IVVREE-DKDDPAVKKLVEAYQSDEVKA 254 (268) T ss_pred EEECCC-CCCCHHHHHHHHHHCCHHHHH T ss_conf 997155-668889999999974999999 No 97 >PRK10641 btuB vitamin B12/cobalamin outer membrane transporter; Provisional Probab=43.90 E-value=22 Score=15.37 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHH-HHHHHCCCCCCCCEEEEEECCHHHHHH Q ss_conf 9248999999999-999831420137679998034258999 Q gi|254780707|r 1 MRFFFVVLMCFVV-LEVYCGTGTFARNRIRIAGSSTLFPYS 40 (346) Q Consensus 1 Mk~~~~~~~~~~~-l~~~~~~~~~a~~~I~i~GSst~~P~~ 40 (346) |||..++.++.+. +.+.+.. .+.+.|.+.++-+..|+. T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~--~~~devvVTAtr~~~~~~ 40 (615) T PRK10641 2 IKKASLLTALSVTAFSAWAQD--TSPDTLVVTANRFQQPRS 40 (615) T ss_pred CHHHHHHHHHHHHCCHHHHCC--CCCCEEEEECCCCCCCHH T ss_conf 448999999987513354335--899719990348515776 No 98 >PRK13697 cytochrome c6; Provisional Probab=42.94 E-value=19 Score=15.63 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=16.8 Q ss_pred CCHHHHHHHHHHHH-HHHHCCCCCCCC Q ss_conf 92489999999999-998314201376 Q gi|254780707|r 1 MRFFFVVLMCFVVL-EVYCGTGTFARN 26 (346) Q Consensus 1 Mk~~~~~~~~~~~l-~~~~~~~~~a~~ 26 (346) ||+++.++++.+++ .+...+++.+.+ T Consensus 1 Mk~l~~~~l~~~~~~~~~~~~pA~Aad 27 (111) T PRK13697 1 MKKILKLVLLTLLLLTFAFTSPAFAAD 27 (111) T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 978999999999999998035544416 No 99 >PRK10449 heat-inducible protein; Provisional Probab=42.00 E-value=21 Score=15.45 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=12.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCC Q ss_conf 924899999999999983142 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG 21 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~ 21 (346) ||+++.++++.++++.+.+++ T Consensus 1 MKk~l~l~~~~llLagC~s~~ 21 (140) T PRK10449 1 MKKVVALVALSLLMAGCVSSG 21 (140) T ss_pred CCHHHHHHHHHHHHHHCCCCC T ss_conf 903499999999997523899 No 100 >PRK10086 DNA-binding transcriptional regulator DsdC; Provisional Probab=41.90 E-value=23 Score=15.19 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=43.6 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) ..+.|+|+-+.++.. +......+|.+.||++.+. +..+.+ ...+..+. +|++..-.+..+. T Consensus 100 ~~G~LrI~~~~~~~~~~L~p~L~~F~~~~P~i~l~-l~~~~~---~~dl~~~~----~Dlai~~g~~~~~---------- 161 (311) T PRK10086 100 LSGTLTVYSRPSIAQCWLVPRLADFTRRYPSISLT-ILTGNE---NINFQRAG----IDLAIYFDDAPSA---------- 161 (311) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EEECCC---CCCHHCCC----CEEEEEECCCCCC---------- T ss_conf 67851036772799875169999999618976999-996477---46410267----5058994788999---------- Q ss_pred CCCEEEEEECCCCEEEECC Q ss_conf 8724666521541255416 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDR 121 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~ 121 (346) .+...++..+.++++..+ T Consensus 162 -~l~~~~L~~~~~~~vasP 179 (311) T PRK10086 162 -QLTHHFLMDESILPVCSP 179 (311) T ss_pred -CCEEEECCCCEEEEEECH T ss_conf -848999746629999988 No 101 >KOG1680 consensus Probab=40.63 E-value=12 Score=16.83 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC Q ss_conf 999999999987798079998157620578988521013353012133 Q gi|254780707|r 39 YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS 86 (346) Q Consensus 39 ~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss 86 (346) +|..+++.|..-..|..+.++--.|+| +.||+| .|+...+ T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~g---ksFcsG-----~Dl~e~~ 104 (290) T KOG1680 65 TMLELAEAFKDFESDDSVGVIVLTGSG---KSFCSG-----ADLKEMK 104 (290) T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCC-----CCHHHHH T ss_conf 999999999974046765479997688---752364-----3789875 No 102 >TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Probab=40.37 E-value=20 Score=15.54 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.4 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 924899999999999983 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYC 18 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~ 18 (346) ||+++++++++++++.|. T Consensus 1 Mkk~~~~~~~~~~~~SCg 18 (449) T TIGR03525 1 MKKYLVFAALVVLVYSCG 18 (449) T ss_pred CCHHHHHHHHHHHHHHCC T ss_conf 912489999999872105 No 103 >COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism] Probab=40.32 E-value=25 Score=15.04 Aligned_cols=92 Identities=12% Similarity=0.205 Sum_probs=48.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC-----CCCCEEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH Q ss_conf 9248999999999999831420-----13767999803--4258999999999998779807999815762057898852 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGT-----FARNRIRIAGS--STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCR 73 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~-----~a~~~I~i~GS--st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~ 73 (346) |+++..++++++++.++...+. .+-.+|+++.. ++....+....... +.. +..+ .+..+.+....+.+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~tV~~a~~~W~s~~~~t~v~~~iL-k~~-Gy~v-~~~~~~~~~~~~sla~ 77 (302) T COG2113 1 MKKLLALLAAVAAAALLAAAAAAAAAAEAGKTVRIADVGWTSGTATTNVAKKIL-KGL-GYTV-ELVTLDTAVMYQSLAK 77 (302) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHC-CCCC-EEEECCHHHHHHHHHC T ss_conf 923899999999999986220011134558825884369617899999999999-967-9962-4665559999999973 Q ss_pred HCCCCCCCEEECCC-CCCHHHHHHHHH Q ss_conf 10133530121332-024767876762 Q gi|254780707|r 74 GIGDDTIDIVNSSR-KITQNELDECKK 99 (346) Q Consensus 74 G~~~~~~dig~ssr-~l~~~E~~~~~~ 99 (346) |. +|+....= |..+.-.....+ T Consensus 78 gd----~D~~~~~W~p~~~~~~~~~~~ 100 (302) T COG2113 78 GD----LDVFPEAWLPTTPDDYKKAVK 100 (302) T ss_pred CC----CCCCCCEECCCCHHHHHHHHC T ss_conf 79----753201026887588998742 No 104 >pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. Probab=40.26 E-value=25 Score=15.04 Aligned_cols=47 Identities=13% Similarity=0.033 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCC Q ss_conf 8999999999998779807999815762057898852101335301213320 Q gi|254780707|r 37 FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRK 88 (346) Q Consensus 37 ~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~ 88 (346) .|++-+..+.|=+++ ++++..+...+++..++++.+|. +||+.++-. T Consensus 5 ap~~vA~~~G~f~~~-GL~Ve~~~~~~~~~~~~al~sG~----~D~a~~~~~ 51 (216) T pfam09084 5 AGLYVAQEKGYFKEE-GLDVEIVEPADPSDAVQLVAAGK----ADFGVSYQP 51 (216) T ss_pred HHHHHHHHCCCHHHC-CCCEEEEECCCCHHHHHHHHCCC----CCEEECCCH T ss_conf 899999987946884-98089996688278999997698----677853719 No 105 >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae Probab=39.06 E-value=23 Score=15.19 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=16.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCC Q ss_conf 924899999999999983142 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG 21 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~ 21 (346) |||+++.++.+.+|++..|++ T Consensus 1 MKk~~l~~~iasal~LagCGg 21 (792) T TIGR03502 1 MKKLLLSLAIASALGLAGCGD 21 (792) T ss_pred CCHHHHHHHHHHHHHHHCCCC T ss_conf 933789999999875004578 No 106 >PRK04792 tolB translocation protein TolB; Provisional Probab=38.62 E-value=23 Score=15.20 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCHHHHH Q ss_conf 9248999999999999831420137679998-03425899 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIA-GSSTLFPY 39 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~-GSst~~P~ 39 (346) ||++++ .+++++++++..+.|+-.|.|. |.....|+ T Consensus 2 ~k~~~~---~l~lll~~~s~~A~A~L~IeIt~G~~~~~PI 38 (450) T PRK04792 2 LKRLIL---GLFVLLLSFSQVANAALELVITDGIDSARPI 38 (450) T ss_pred CHHHHH---HHHHHHHHHHHHHEEEEEEEEECCCCCCCCE T ss_conf 389999---9999999865752024999995477774254 No 107 >PRK13528 outer membrane receptor FepA; Provisional Probab=38.58 E-value=26 Score=14.89 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=17.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEEEC Q ss_conf 9248999999999999831420137-------67999803 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR-------NRIRIAGS 33 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~-------~~I~i~GS 33 (346) |++...+.++.++|+++++..++++ ++|.++++ T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~e~vVvt~~ 42 (727) T PRK13528 3 MRANKILWLLTVVLAGLNSQLSAAESSDDDNGETVVVEGT 42 (727) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC T ss_conf 3046699999999998750555653346778868998787 No 108 >cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile Probab=38.55 E-value=26 Score=14.88 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=15.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHC Q ss_conf 7980799981576205789885210 Q gi|254780707|r 51 FPEFKTPFVESGGSSVGLKEFCRGI 75 (346) Q Consensus 51 ~~~~~~~~~~~~GSg~Gi~~~~~G~ 75 (346) ||+ .+++|.-.|||+|.++.++|. T Consensus 39 ~~d-eVPvIAv~gSGGG~RAmva~~ 62 (505) T cd07200 39 SLR-EVPVIALLGSGGGFRAMVGMS 62 (505) T ss_pred CCC-CCCEEEEECCCCHHHHHHHHH T ss_conf 866-699899971684299998767 No 109 >COG4676 Uncharacterized protein conserved in bacteria [Function unknown] Probab=38.28 E-value=25 Score=15.01 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=40.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCHHHHHHHHHHC Q ss_conf 92489999999999998314201376799980342589999999999--9877980799981576205789885210 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENF--SEYFPEFKTPFVESGGSSVGLKEFCRGI 75 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y--~~~~~~~~~~~~~~~GSg~Gi~~~~~G~ 75 (346) ||+++...+++.+++++.+..+++...+.+.|-.+----.....+.| .-.+|...+ ..+-+.+++..+.|. T Consensus 1 mr~~~~~~~~l~~l~~al~l~A~ae~~v~ld~P~~GWr~s~g~~~~~~q~v~YPa~sV----~~~~~Q~~~a~I~G~ 73 (268) T COG4676 1 MRTWMMRAGFLAALLVALSLVAWAEPEVELDAPLSGWRPSGGEDASYRQSVNYPASSV----NRADDQNIRALIRGR 73 (268) T ss_pred CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHH T ss_conf 9168777779999987446344138861025755565557776664342134788875----431340057887556 No 110 >pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands. Probab=38.26 E-value=27 Score=14.86 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCC Q ss_conf 924899999999999983142 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG 21 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~ 21 (346) ||+++.++++++++...++.+ T Consensus 1 mkk~~~~~~~~~~~~~~~~~~ 21 (643) T pfam10566 1 MKKLTIILLAFLLLIGNLSLA 21 (643) T ss_pred CCCHHHHHHHHHHHHHHHHHH T ss_conf 950257899999999765675 No 111 >pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. Probab=37.94 E-value=25 Score=14.98 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=15.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCC Q ss_conf 924899999999999983142 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG 21 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~ 21 (346) ||+++++++.+++.+.+++.. T Consensus 1 MkK~ll~~~llls~~s~aa~~ 21 (126) T pfam09403 1 MKKILLCSMLILSSLSYAAEA 21 (126) T ss_pred CHHHHHHHHHHHHHHHHHHHH T ss_conf 916999999999999987457 No 112 >cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Probab=37.75 E-value=27 Score=14.85 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=15.5 Q ss_pred HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC Q ss_conf 999999974987405220277----55963489 Q gi|254780707|r 301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS 329 (346) Q Consensus 301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp 329 (346) +++-+.|++|++-...|.++. +-|||||. T Consensus 4 i~~QvEfYFSd~NL~~D~fL~~~m~~~g~Vpl~ 36 (75) T cd07323 4 IKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLS 36 (75) T ss_pred HHHHHHHHCCHHHHHCCHHHHHHCCCCCCEEHH T ss_conf 999999983686551489999862789979749 No 113 >pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function. Probab=37.51 E-value=27 Score=14.79 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=15.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 9248999999999999831420 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGT 22 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~ 22 (346) ||+++..++++++|+.+|+.-. T Consensus 1 MkK~i~~il~~~llL~GCs~mn 22 (304) T pfam07901 1 MRKLIKLILIATLLLSGCSTTN 22 (304) T ss_pred CCHHHHHHHHHHHHHCCCCCCC T ss_conf 9018999999999971334455 No 114 >pfam06551 DUF1120 Protein of unknown function (DUF1120). This family consists of several hypothetical bacterial proteins of unknown function. Probab=35.62 E-value=30 Score=14.62 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=37.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCC--EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC Q ss_conf 92489999999999998314201376--7999803425899999999999877980799981576205789885210133 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARN--RIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD 78 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~--~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~ 78 (346) ||++++...+++.+.+++.+++++.. .+++.|.=+ |..=+++. |++|+ T Consensus 1 mkK~l~~~~i~a~l~~~~ssa~aa~~ta~LkV~G~i~----------------p~aCtp~l----s~GG~---------- 50 (145) T pfam06551 1 MKKNLAATAIAAGLAVLATSAQAADSTAVLKVTGTIT----------------PGACTPTL----SGGGT---------- 50 (145) T ss_pred CCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEE----------------CCCEEEEE----CCCCE---------- T ss_conf 9237899999999998603142257744699999986----------------67317785----79975---------- Q ss_pred CCCEEECC-CCCCHHHHHH Q ss_conf 53012133-2024767876 Q gi|254780707|r 79 TIDIVNSS-RKITQNELDE 96 (346) Q Consensus 79 ~~dig~ss-r~l~~~E~~~ 96 (346) +|||-.+ +.|++.|..+ T Consensus 51 -vDfG~I~~~~Ls~t~~t~ 68 (145) T pfam06551 51 -VDYGTISASALSPTDYTQ 68 (145) T ss_pred -EEECEECHHHCCCCCCCC T ss_conf -864301141279876422 No 115 >PRK13883 conjugal transfer protein TrbH; Provisional Probab=35.14 E-value=25 Score=15.05 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=24.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCH--HHHHHHHHHHHHHHHCCCCE Q ss_conf 92489999999999998314201376799980342--58999999999998779807 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSST--LFPYSKIIAENFSEYFPEFK 55 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst--~~P~~~~~a~~y~~~~~~~~ 55 (346) ||+++.+.+++++|+.|+.+.... +-+. +++ -+-+.+-..+.....+|-.+ T Consensus 1 MrK~~~~all~laL~gCAtt~~YG-NFv~---~~~~~~q~lA~Dav~QL~~lYPPA~ 53 (156) T PRK13883 1 MRKILSLALLALALGGCATTSQYG-NFVQ---ASAADQQKLATDAVQQLAALYPPAQ 53 (156) T ss_pred CHHHHHHHHHHHHHHCCCCCCCCC-CCCC---CCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 926899999999970331357887-7358---7403548889999999998568754 No 116 >COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion] Probab=34.95 E-value=30 Score=14.55 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9248999999999999831 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCG 19 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~ 19 (346) ||+.+..++++++|+.+++ T Consensus 1 mk~~~~s~~ala~l~sLA~ 19 (58) T COG5567 1 MKNVFKSLLALATLFSLAG 19 (58) T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 9048999999999999985 No 117 >TIGR01779 TonB-B12 TonB-dependent vitamin B12 receptor; InterPro: IPR010101 The outer membrane is an essential component of Gram-negative bacteria, providing them with increased resistance to antibiotics, digestive enzymes, detergents and immune surveillance . The outer membrane is permeable to small hydrophilic molecules because of the presence of aqueous diffusion channels (e.g. porins). Small molecules present at high concentration diffuse down their concentration gradients into the periplasmic space. Porins are inadequate for the efficient acquisition of iron siderophores, cobalamins (Cbl), and other molecules that are present at very low concentrations and that are too bulky to pass through the lumen of the porin. Another class of outer membrane proteins binds these substrates with high specificity and carries out active transport across the outer membrane. This active transport process requires an energy source and a second protein, TonB. Outer membrane active-transport proteins interact with the transperiplasmic protein TonB through a conserved sequence, the "Ton-box". Interaction with TonB couples the energy of the proton motive force of the inner membrane to drive an outer membrane transport cycle . To date, crystal structures of four TonB-dependent transporters have been solved. Three of these are iron-siderophore transporters: ferrichrome transporter FhuA , ; ferric enterobactin transporter FepA ; and ferric dicitrate transporter FecA . The fourth structure is the cobalamin transporter BtuB . All of these structures are composed of two domains, a conserved N-terminal globular domain (hatch) and a 22-stranded beta-barrel (barrel). The hatch domain resides within the barrel and occludes the large pore of the large barrel domain. The hatch domains are composed of a central core of four beta-strands connected by loops. The conserved Ton-box is located near the periplasmic opening of the barrel and precedes the conserved hatch core. The barrels have large extracellular loops and short periplasmic turns connecting the beta-strands. TonB-dependent transporters bind their cognate substrates using residues from hatch loops, from the interior surfaces of beta-strands in the barrel wall, and from extracellular loops of the barrel . This entry represents the TonB-dependent outer membrane receptor found in gamma-proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). ; GO: 0004872 receptor activity, 0015889 cobalamin transport, 0016020 membrane. Probab=34.13 E-value=24 Score=15.14 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=45.5 Q ss_pred CCHHHHHHHHH-HH--HHHHHCCCCCC-----CCEEEEE-------ECCHHHHH-------HHHH----HHHHHHHCCCC Q ss_conf 92489999999-99--99983142013-----7679998-------03425899-------9999----99999877980 Q gi|254780707|r 1 MRFFFVVLMCF-VV--LEVYCGTGTFA-----RNRIRIA-------GSSTLFPY-------SKII----AENFSEYFPEF 54 (346) Q Consensus 1 Mk~~~~~~~~~-~~--l~~~~~~~~~a-----~~~I~i~-------GSst~~P~-------~~~~----a~~y~~~~~~~ 54 (346) |++.++..... ++ |++|....+.. .+++.++ =|.+++|+ ++.| ..+.-+.-|+| T Consensus 1 m~k~~L~~a~a~La~~lt~~~a~~~~~~~p~~l~~~VVTA~R~~Q~~s~~LA~V~ii~R~dIEr~Q~~sl~dlLR~~~GV 80 (644) T TIGR01779 1 MKKSALAPALASLAVALTLCSALAADEAEPVDLDTVVVTANRFAQTASQTLAPVTIITRQDIERTQAKSLPDLLRRLPGV 80 (644) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCE T ss_conf 93035678899999999999998743306766005648762133763354554157634267787631266774137770 Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 79998157620578988521013353 Q gi|254780707|r 55 KTPFVESGGSSVGLKEFCRGIGDDTI 80 (346) Q Consensus 55 ~~~~~~~~GSg~Gi~~~~~G~~~~~~ 80 (346) .+ -+.+|.|.--..|+.|+..+|| T Consensus 81 ~l--a~nGG~G~~~SLF~RGT~SdhV 104 (644) T TIGR01779 81 SL--AQNGGAGKNTSLFLRGTESDHV 104 (644) T ss_pred EE--ECCCCCCCCEEEEEECCCCCEE T ss_conf 24--3378985520777842466616 No 118 >pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function. Probab=33.95 E-value=31 Score=14.46 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 9248999999999999831420 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGT 22 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~ 22 (346) |||++-++++++.+.+....++ T Consensus 1 Mkkl~gi~~ll~~l~L~vGa~a 22 (183) T pfam06510 1 MKKLIGILLLLAGLGLVVGAGA 22 (183) T ss_pred CHHHHHHHHHHHHHHHHCCCCC T ss_conf 9148999999999995400565 No 119 >PRK10510 putative outer membrane lipoprotein; Provisional Probab=33.94 E-value=31 Score=14.46 Aligned_cols=23 Identities=9% Similarity=0.369 Sum_probs=19.5 Q ss_pred CCCCCCCCEEECCCCCCCHHHHH Q ss_conf 11122450354488542357899 Q gi|254780707|r 160 PDFPEVRIAIYVPSGKHGTREVL 182 (346) Q Consensus 160 ~~lp~~~I~~~~r~~~SGT~~~F 182 (346) ...|+..|.+.+..|..|+.++= T Consensus 139 ~~yp~~~V~I~GHTD~~G~~~yN 161 (219) T PRK10510 139 KEYPKTAVNVVGYTDSTGSHDLN 161 (219) T ss_pred HHCCCCEEEEEEEECCCCCHHHH T ss_conf 98899279999876896719999 No 120 >cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon Probab=33.22 E-value=19 Score=15.68 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=11.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH Q ss_conf 798079998157620578988521 Q gi|254780707|r 51 FPEFKTPFVESGGSSVGLKEFCRG 74 (346) Q Consensus 51 ~~~~~~~~~~~~GSg~Gi~~~~~G 74 (346) ||+ +|++|.-.|||+|.++.+++ T Consensus 48 ~~d-dVPvIAi~gSGGG~RAmv~~ 70 (541) T cd07201 48 QED-EVPVVAVMTTGGGTRALTSM 70 (541) T ss_pred CCC-CCCEEEEECCCCCHHHHHHH T ss_conf 976-58878996478559999987 No 121 >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Probab=32.95 E-value=33 Score=14.37 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=50.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHCCCC Q ss_conf 9248999999999999831420137679998034258999999999998779807--99981576205789885210133 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFK--TPFVESGGSSVGLKEFCRGIGDD 78 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~--~~~~~~~GSg~Gi~~~~~G~~~~ 78 (346) ||+++.+++++.+.+.+|.++...+.+|. +.+++....|+-+ ....++-|-. +|+- T Consensus 2 mRvl~i~Lliis~fl~a~~s~~e~~s~~~-------------~~~d~ksi~~~~Kylllmfes~~C~-----yC~~---- 59 (182) T COG2143 2 MRVLLIVLLIISLFLSACKSNNEKRSNID-------------VFDDNKSISPNDKYLLLMFESNGCS-----YCER---- 59 (182) T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHH-------------HHHHHHHCCCCCCEEEEEECCCCCH-----HHHH---- T ss_conf 00199999999999999717804432255-------------6777874595675899997589970-----7999---- Q ss_pred CCCEEECCCCCC-HHHHHHHHHCCCCCCEEEEE-ECCCCEEEECCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 530121332024-76787676248787246665-21541255416665456888888876410255 Q gi|254780707|r 79 TIDIVNSSRKIT-QNELDECKKHGVSDIQEVTI-GHDGILLVSDRDMVSVSLTVEDLYKALASYLI 142 (346) Q Consensus 79 ~~dig~ssr~l~-~~E~~~~~~~~~~~~~~~~v-~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~ 142 (346) ..+.++ +.+++.....+. ....+ ..+.-.+..+.......++.++|++.|..... T Consensus 60 ------fKKd~~~~krlrEylk~hf---~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182) T COG2143 60 ------FKKDLKNVKRLREYLKEHF---SAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182) T ss_pred ------HHHHHCCHHHHHHHHHHCE---EEEEEEECCCCCEEEECCCEEEEECHHHHHHHHCCCCC T ss_conf ------9886246387999976275---89999831576267412765455439999987355568 No 122 >COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=32.06 E-value=34 Score=14.28 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=42.6 Q ss_pred CCHHHHHHHHHHHHH-HHHCCCCCCCCEEEEEECCHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCHHH-HHHHHHHCCC Q ss_conf 924899999999999-983142013767999803425899999999-9998779807999815762057-8988521013 Q gi|254780707|r 1 MRFFFVVLMCFVVLE-VYCGTGTFARNRIRIAGSSTLFPYSKIIAE-NFSEYFPEFKTPFVESGGSSVG-LKEFCRGIGD 77 (346) Q Consensus 1 Mk~~~~~~~~~~~l~-~~~~~~~~a~~~I~i~GSst~~P~~~~~a~-~y~~~~~~~~~~~~~~~GSg~G-i~~~~~G~~~ 77 (346) ||++..+.-++.++. ++.+..+.+ ..|+++=-+.+-|.....++ .|.|.. +..+ --.--.||+- +.++.+|. T Consensus 4 ~~r~~~l~~~~aa~a~~l~~~~Aqa-~~vtVgYQt~~eP~kvaqADg~~aK~~-gati-DWRkFdSG~~vv~AlASGd-- 78 (334) T COG4521 4 LRRISSLSSLLAALAFVLLAFAAQA-VDVTVGYQTSAEPAKVAQADGAFAKES-GATI-DWRKFDSGASIVRALASGD-- 78 (334) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEECCCCCCCCCCCCHHHHHC-CCCC-CHHHCCCHHHHHHHHHCCC-- T ss_conf 7778888889999998876766422-316886540357520213463567760-7854-5110475368999986288-- Q ss_pred CCCCEEECC-CCC Q ss_conf 353012133-202 Q gi|254780707|r 78 DTIDIVNSS-RKI 89 (346) Q Consensus 78 ~~~dig~ss-r~l 89 (346) ++||..- .|+ T Consensus 79 --vqiG~iGSspl 89 (334) T COG4521 79 --VQIGNIGSSPL 89 (334) T ss_pred --CCCCCCCCCHH T ss_conf --61046578566 No 123 >PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed Probab=31.95 E-value=34 Score=14.27 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=10.1 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 924899999999999 Q gi|254780707|r 1 MRFFFVVLMCFVVLE 15 (346) Q Consensus 1 Mk~~~~~~~~~~~l~ 15 (346) ||+++++++++++++ T Consensus 1 mk~~~~~~~~~~~l~ 15 (201) T PRK00031 1 MKKLLIAALLAAALV 15 (201) T ss_pred CCHHHHHHHHHHHHH T ss_conf 915999999999987 No 124 >TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space. Probab=31.89 E-value=34 Score=14.26 Aligned_cols=142 Identities=9% Similarity=0.122 Sum_probs=68.0 Q ss_pred CCHHHHHHHHHHHHHHH-H--CC---------CC----CC---------CCEEEE--EECCHHHHHHHHH---HHHHHHH Q ss_conf 92489999999999998-3--14---------20----13---------767999--8034258999999---9999987 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVY-C--GT---------GT----FA---------RNRIRI--AGSSTLFPYSKII---AENFSEY 50 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~-~--~~---------~~----~a---------~~~I~i--~GSst~~P~~~~~---a~~y~~~ 50 (346) |||++.++++++.+++. + ++ .. .+ .+.|+. -++....-+...| .+..+|+ T Consensus 1 mkr~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~g~~P~e~~~~~~~~~~pL~~~Lek~ 80 (299) T TIGR01098 1 MKRLLALLAALLVASLAAACGSSEIDNRDCAAKAADAADADADVEKSETPKELNFGILPGENASNLARRWEPLKDYLEKK 80 (299) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 94788999999999999875420014543565510010156212103677726899844887557777668999988875 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCC--CCCHHHHHHHHHCCCCCCEEE---EEE-----CCCCEEEEC Q ss_conf 7980799981576205789885210133530121332--024767876762487872466---652-----154125541 Q gi|254780707|r 51 FPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR--KITQNELDECKKHGVSDIQEV---TIG-----HDGILLVSD 120 (346) Q Consensus 51 ~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr--~l~~~E~~~~~~~~~~~~~~~---~v~-----~d~i~i~~n 120 (346) - +++|..+-+.- ...+++|..++++|||.-+- .+-...... ..++... .+. .+--+++++ T Consensus 81 L-g~kV~~~~~~d----Y~a~IEamr~g~~D~a~~g~~sY~~A~~~~~-----~~~~a~~~~~~~~~~g~~~Y~S~~iv~ 150 (299) T TIGR01098 81 L-GIKVELFVATD----YSAVIEAMRFGRVDIAWFGPSSYVLAHRRAN-----AEAFALTAIRYVSTDGSPGYYSVIIVK 150 (299) T ss_pred C-CCCEEEEEECC----CCCEEEEECCCCEEEEEECCCHHHEEEECCC-----CCHHHHHHHHHCCCCCCCCEEEEEEEC T ss_conf 5-88679986168----3103342326807898347851232200138-----701213443311688898348999983 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHH Q ss_conf 66654568888888764102555553236730232310011122450354488542357 Q gi|254780707|r 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTR 179 (346) Q Consensus 121 ~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~ 179 (346) ++ .+|+.|.|+-..|....+-..-|...||.- T Consensus 151 ~d---------------------------S~i~~~~DlL~~LKGK~~af~Dp~STSG~l 182 (299) T TIGR01098 151 AD---------------------------SPIKSLKDLLKKLKGKTFAFGDPASTSGYL 182 (299) T ss_pred CC---------------------------CCCCCHHHHHHHCCCCEEEECCCCCCCHHH T ss_conf 89---------------------------996338999975079759850688751247 No 125 >COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane] Probab=30.54 E-value=36 Score=14.13 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=26.1 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH Q ss_conf 2489999999999998314201376799980342589999999999987798079998157620578 Q gi|254780707|r 2 RFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGL 68 (346) Q Consensus 2 k~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi 68 (346) +..+.++++++++.+++++++.+. +..+.+.+.|.+.. +.....++...+|.|- T Consensus 3 ~~~~~~~~~~~l~~~f~~~~~~~~------------~~~~~l~~~~~~i~-~~s~~f~q~~~~g~~~ 56 (211) T COG2834 3 LMMMKLLLALALLLLFLSACAQAG------------EAASQLKERLAKVK-SYSASFTQTVESGSGK 56 (211) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHC-CEEEEEEEEEECCCCC T ss_conf 378999999999999988887745------------99999999986304-1247999996159961 No 126 >cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Probab=30.18 E-value=29 Score=14.65 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=10.8 Q ss_pred HHHHHHCHHHCCCCCHHH----HCCCCCCC Q ss_conf 999974987405220277----55963489 Q gi|254780707|r 304 YVSFSVSDEMMAPDSQLF----QYGLIPIS 329 (346) Q Consensus 304 Fl~~~ls~~~~~~~~~~~----~~GyvPLp 329 (346) =+.|++|++-.-.|.++. +-|||||+ T Consensus 7 QvEyYFSd~NL~~D~fLr~~md~~G~Vpl~ 36 (73) T cd08038 7 QIEYYFSTENLERDFFLRRKMDLQGFLPIS 36 (73) T ss_pred HHHHCCCHHHCCCCHHHHHHCCCCCCEEHH T ss_conf 668202665513179999841878989679 No 127 >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO).. Probab=30.02 E-value=20 Score=15.50 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.5 Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH Q ss_conf 679998034258999999999998779807999815762057898 Q gi|254780707|r 26 NRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKE 70 (346) Q Consensus 26 ~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~ 70 (346) -.-+.++++-|.||.+++|++- |+....|.++|=|+-|++ T Consensus 282 PvssGd~~pYVTPlVRKLA~~~-----GvDLssVkGTGvGGRIRK 321 (607) T TIGR02927 282 PVSSGDSSPYVTPLVRKLAKEK-----GVDLSSVKGTGVGGRIRK 321 (607) T ss_pred CCCCCCCCCCCHHHHHHHHHHC-----CCCCCCCEECCCCCCCCH T ss_conf 5124688861003468777626-----831034111134552005 No 128 >CHL00132 psaF photosystem I subunit III; Validated Probab=29.71 E-value=37 Score=14.05 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=16.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 924899999999999983142013 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFA 24 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a 24 (346) ||+++.+++++.+++.+....+.+ T Consensus 1 Mrr~~a~~l~~~l~~~~ap~~a~A 24 (185) T CHL00132 1 MKKFNLIFLLAALLLTLNPNIALA 24 (185) T ss_pred CHHHHHHHHHHHHHHHCCCCHHHC T ss_conf 906999999999999368622110 No 129 >TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770 This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria . . Probab=29.35 E-value=38 Score=14.02 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=19.8 Q ss_pred CCCCCCC-EEEEEEEEECCCCCC----------CHHHHHHHHHHHCH Q ss_conf 2798750-367899970788566----------88999999997498 Q gi|254780707|r 276 VSGLYPI-SRPLLFYVKRQHFNS----------VLGLREYVSFSVSD 311 (346) Q Consensus 276 ~~g~YPl-~r~ly~yv~~~~~~~----------~~~~~~Fl~~~ls~ 311 (346) .+-..|= +-+||++++....+. ..++++||+++-|+ T Consensus 323 ~Aa~~P~kT~YLYFva~~~klG~h~F~~~l~~Hnka~~~Yl~~~~~~ 369 (373) T TIGR00247 323 QAAAHPKKTDYLYFVAKGSKLGGHKFTKNLKEHNKAVQDYLKSFKTE 369 (373) T ss_pred HHHHCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHC T ss_conf 99508667873689984650155134321556657899988653000 No 130 >PRK09810 entericidin A; Provisional Probab=28.25 E-value=39 Score=13.97 Aligned_cols=21 Identities=24% Similarity=0.380 Sum_probs=12.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCC Q ss_conf 924899999999999983142 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTG 21 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~ 21 (346) ||+++.+++....+...|.++ T Consensus 2 mkrli~lil~~~~ll~gcnta 22 (41) T PRK09810 2 MKRLIVLVLLASTLLTGCNTA 22 (41) T ss_pred HHHHHHHHHHHHHHHHCCCCC T ss_conf 389999999999998256212 No 131 >PRK02998 prsA peptidylprolyl isomerase; Reviewed Probab=28.15 E-value=40 Score=13.89 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=24.7 Q ss_pred CCHHHHHHHHHH---HHHHHHCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHHHH Q ss_conf 924899999999---9999831420137679998-0342589999999999987 Q gi|254780707|r 1 MRFFFVVLMCFV---VLEVYCGTGTFARNRIRIA-GSSTLFPYSKIIAENFSEY 50 (346) Q Consensus 1 Mk~~~~~~~~~~---~l~~~~~~~~~a~~~I~i~-GSst~~P~~~~~a~~y~~~ 50 (346) ||+..+++++++ ++++++|++ ....++.. |.=|..-++..+-+.|.+. T Consensus 1 Mkkkk~~~~~~~~~~~l~LaaC~s--~~~vat~kgg~IT~~e~y~~lk~~~g~~ 52 (283) T PRK02998 1 MKKKKLFIGTIISCVVLALSACGS--SDNVVTSKVGNITEKELSKELRQKYGES 52 (283) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC--CCCEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 935899999999999999986689--9817984399283999999999999999 No 132 >PRK02889 tolB translocation protein TolB; Provisional Probab=27.82 E-value=40 Score=13.86 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=20.0 Q ss_pred CCHHHHHHHHHHH--HHHHHCCCCCCCCEEEEEEC-CHHHHH Q ss_conf 9248999999999--99983142013767999803-425899 Q gi|254780707|r 1 MRFFFVVLMCFVV--LEVYCGTGTFARNRIRIAGS-STLFPY 39 (346) Q Consensus 1 Mk~~~~~~~~~~~--l~~~~~~~~~a~~~I~i~GS-st~~P~ 39 (346) |+.++.+.+.+++ ++.++++.|.|+-.|.|.+. ....|+ T Consensus 1 ~~~~~~l~~~~~~~~~l~~~~~~A~A~L~IeIt~g~~~~~pI 42 (430) T PRK02889 1 MSLMTKLGLRALVASCLIAAGGAAHAQLNVEITGVGATQFPI 42 (430) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEE T ss_conf 917998999999999998621020278999993578870727 No 133 >pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached. Probab=27.80 E-value=37 Score=14.06 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=9.7 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 92489999999999998 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVY 17 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~ 17 (346) ||+++.++.++++|+.+ T Consensus 1 Mkk~~~l~~~~l~LagC 17 (26) T pfam08139 1 MKKLLLLLLALLLLAGC 17 (26) T ss_pred CHHHHHHHHHHHHHHCC T ss_conf 96699999999998233 No 134 >PRK08139 enoyl-CoA hydratase; Validated Probab=27.05 E-value=41 Score=13.85 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHC Q ss_conf 8999999999998--77980799981576205789885210 Q gi|254780707|r 37 FPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGI 75 (346) Q Consensus 37 ~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~ 75 (346) ..++..+.+.+.. .++++++.++.+.| +.||+|. T Consensus 36 ~~m~~el~~~l~~~~~d~~vr~vvltg~G-----~~FcaG~ 71 (265) T PRK08139 36 EAMLAALQAALDAIAADPSVRVVVLAAAG-----KAFCAGH 71 (265) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCC T ss_conf 99999999999999758993599996799-----8642787 No 135 >PRK10477 outer membrane lipoprotein Blc; Provisional Probab=26.86 E-value=33 Score=14.36 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=18.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEE Q ss_conf 92489999999999998314201376799 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIR 29 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~ 29 (346) ||.+-+++.++.++.+++|++....+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~c~~~~~p~~~~ 29 (177) T PRK10477 1 MRLLPVVAAVTAAFLVVACSSPTPPKGVT 29 (177) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 94078999999999997646999999884 No 136 >PRK13513 putative outer membrane receptor; Provisional Probab=26.83 E-value=42 Score=13.76 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEECCHHHHH Q ss_conf 248999999999999831420137------67999803425899 Q gi|254780707|r 2 RFFFVVLMCFVVLEVYCGTGTFAR------NRIRIAGSSTLFPY 39 (346) Q Consensus 2 k~~~~~~~~~~~l~~~~~~~~~a~------~~I~i~GSst~~P~ 39 (346) +++.+.+++++++++++++++.|+ +.|.+.++-+..++ T Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~aa~~~~~le~ivVTAtr~~~~~ 49 (660) T PRK13513 6 QRFRKTHSAALVIAAVISSQGYAAEKTTPTDTMVVTASGFQQRI 49 (660) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCH T ss_conf 54437999999999987568863767889872999704874687 No 137 >PRK10082 putative DNA-binding transcriptional regulator; Provisional Probab=26.10 E-value=43 Score=13.68 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=33.3 Q ss_pred CCCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC Q ss_conf 0137679998034258-9999999999987798079998157620578988521013353012133 Q gi|254780707|r 22 TFARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS 86 (346) Q Consensus 22 ~~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss 86 (346) ......|+|+.+.++. .+...+...|...++ . .++...+..-+..+.+|. +|++.+- T Consensus 97 ~~~~g~l~i~a~~~~~~~~Lp~~l~~~~~~~~---~-~~~~~~~~~~~~~l~~g~----~D~~~~~ 154 (303) T PRK10082 97 DYAQRKIKIAAAHSLSLGLLPSIISQMPPLFT---W-AIEAIDVDEAVDKLREGQ----SDCIFSF 154 (303) T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC---E-EEEEECHHHHHHHHHCCC----CCEEEEC T ss_conf 56754699983177699999999997441277---6-788504899999998799----7199983 No 138 >PRK10760 murein hydrolase B; Provisional Probab=25.97 E-value=44 Score=13.67 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=28.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC------------------CEEEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 9248999999999999831420137------------------67999803425899999999999877 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR------------------NRIRIAGSSTLFPYSKIIAENFSEYF 51 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~------------------~~I~i~GSst~~P~~~~~a~~y~~~~ 51 (346) ||++..++.++++|++|.+.+.... .....+|.-+..|=.+...++-.++| T Consensus 1 ~r~~~~~~~~~~~l~~css~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdy~~~p~~~~Fi~~mv~~~ 69 (357) T PRK10760 1 KRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKH 69 (357) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 940486899999999851899999987677788888888887776766765333906999999999961 No 139 >PRK09967 putative outer membrane lipoprotein; Provisional Probab=25.49 E-value=45 Score=13.62 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=16.9 Q ss_pred CCCCCCEEECCCCCCCHHHH Q ss_conf 12245035448854235789 Q gi|254780707|r 162 FPEVRIAIYVPSGKHGTREV 181 (346) Q Consensus 162 lp~~~I~~~~r~~~SGT~~~ 181 (346) .|+..|.+.+..|..|+.++ T Consensus 81 ~p~~~v~I~GHTD~~G~~~y 100 (160) T PRK09967 81 TGLTHARMDGHTDNYGEDSY 100 (160) T ss_pred CCCCEEEEEEECCCCCCHHH T ss_conf 89962999874799899899 No 140 >TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025 This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family. AphA is a periplasmic acid phosphatase of Escherichia coli belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space. Probab=25.46 E-value=45 Score=13.61 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=21.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC-CCEEEEE Q ss_conf 924899999999999983142013-7679998 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFA-RNRIRIA 31 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a-~~~I~i~ 31 (346) ||+.+..++++++|+..+..++.| ..+..-. T Consensus 1 Mkk~~~~ils~v~ll~a~a~pa~A~g~~~pyt 32 (248) T TIGR01672 1 MKKVTKAILSVVALLTALAVPAVALGKKEPYT 32 (248) T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC T ss_conf 91578899999999999742312205878888 No 141 >PRK09733 putative fimbrial protein; Provisional Probab=25.30 E-value=45 Score=13.60 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=18.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC Q ss_conf 9248999999999999831420137679998034 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS 34 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs 34 (346) ||+.+++.+++++++.... ++....+|+..|.= T Consensus 2 mKk~ll~~~~~~~~s~~~~-A~~~~G~V~F~G~I 34 (181) T PRK09733 2 FKKSLLVAGVAMILSNNVF-ADEGHGIVKFKGEV 34 (181) T ss_pred HHHHHHHHHHHHHHHHHHH-HHCCCCEEEEEEEE T ss_conf 0688999999999866657-64488689999999 No 142 >PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Probab=25.25 E-value=45 Score=13.59 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=12.2 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9248999999999999831 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCG 19 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~ 19 (346) ||+++..+..+++++.+|. T Consensus 1 mkrl~~~L~~ll~v~~L~l 19 (144) T PRK02515 1 MKRLLSWLVRLLVVLSLLL 19 (144) T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9179999999999999999 No 143 >TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118 This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half.. Probab=25.22 E-value=44 Score=13.65 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=10.6 Q ss_pred CCHHHHHHHHHHHH-HHHHCC Q ss_conf 92489999999999-998314 Q gi|254780707|r 1 MRFFFVVLMCFVVL-EVYCGT 20 (346) Q Consensus 1 Mk~~~~~~~~~~~l-~~~~~~ 20 (346) ||..++++++++++ +.+|++ T Consensus 2 mr~~~L~~~~~~~f~LtGCsa 22 (174) T TIGR02747 2 MRLKVLLLLACVAFLLTGCSA 22 (174) T ss_pred CHHHHHHHHHHHHHHHHHHHH T ss_conf 067899999999872002577 No 144 >TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE; InterPro: IPR011926 This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in Escherichia coli and related species.; GO: 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=24.43 E-value=37 Score=14.06 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=20.1 Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCHHHH Q ss_conf 13320011001110013445767895560 Q gi|254780707|r 247 FVGLSFYKNNADVLKLVPIDGIVPSMGTI 275 (346) Q Consensus 247 y~~~~~~~~~~~~~~~~~~~~v~p~~~~i 275 (346) |+.+.-..++..+++++.+.||+|..|.- T Consensus 98 yv~FTgLVE~G~kLkavqVkGVepq~Eq~ 126 (416) T TIGR02213 98 YVKFTGLVERGAKLKAVQVKGVEPQAEQK 126 (416) T ss_pred CCEEEEEEECCCCEEEEEEECCCCCHHHH T ss_conf 20121344217722289974588102355 No 145 >PRK12696 flgH flagellar basal body L-ring protein; Reviewed Probab=23.84 E-value=40 Score=13.87 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=7.1 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 9248999999999999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEV 16 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~ 16 (346) ||++++.++++++|+. T Consensus 2 m~~~l~~~~~~~~L~G 17 (238) T PRK12696 2 IRKLLAASCAVLLLSG 17 (238) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 5899999999999516 No 146 >cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Probab=23.59 E-value=49 Score=13.41 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=14.0 Q ss_pred HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC Q ss_conf 999999974987405220277----55963489 Q gi|254780707|r 301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS 329 (346) Q Consensus 301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp 329 (346) +++=+.|++|++-.-.|.++. +-|||||. T Consensus 4 I~kQvEfYFSd~NL~~D~fL~~~m~~~G~Vpi~ 36 (73) T cd08034 4 IKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIA 36 (73) T ss_pred HHHHHHHHCCHHHCCCCHHHHHHCCCCCCEEHH T ss_conf 999999873685416389999861889989469 No 147 >PRK06072 enoyl-CoA hydratase; Provisional Probab=23.45 E-value=49 Score=13.39 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC Q ss_conf 8999999999998--7798079998157620578988521013353012133 Q gi|254780707|r 37 FPYSKIIAENFSE--YFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS 86 (346) Q Consensus 37 ~P~~~~~a~~y~~--~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss 86 (346) ..++..+.+.+.. .+|+++++++. |.| +.||+| .|+.... T Consensus 18 ~~m~~eL~~a~~~~~~d~~vr~vVl~----g~G-~~FcAG-----~Dl~~~~ 59 (240) T PRK06072 18 LETRNELISALREINADPKIRVVILT----GEG-RAFSVG-----ADLSEIS 59 (240) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEE----CCC-CCEECC-----CCHHHHH T ss_conf 99999999999999758990699998----799-865515-----8878874 No 148 >pfam07172 GRP Glycine rich protein family. This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Probab=23.06 E-value=35 Score=14.19 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999831420137 Q gi|254780707|r 7 VLMCFVVLEVYCGTGTFAR 25 (346) Q Consensus 7 ~~~~~~~l~~~~~~~~~a~ 25 (346) ++.++++..++.++.+.++ T Consensus 8 lLglllA~~lLIsSevaa~ 26 (91) T pfam07172 8 LLGLLLAAVLLISSEVAAA 26 (91) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 149 >KOG3842 consensus Probab=22.98 E-value=34 Score=14.30 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=53.9 Q ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC-CHHHH Q ss_conf 33530121332024767876762487872466652154125541666545688888887641025555532367-30232 Q gi|254780707|r 77 DDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFN-PLKKW 155 (346) Q Consensus 77 ~~~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g-~i~~W 155 (346) +..+||..+|..+-.+|..... ..+-++-.-+--|..+..+|- .+.||+...+--..||.| +..+| T Consensus 118 es~IDFvV~DT~~g~~~~~da~------v~qSTISRfACRIl~dR~~p~-------~AriyAAGFDss~NIflgeka~KW 184 (429) T KOG3842 118 ESPIDFVVTDTWPGSQEHSDAQ------VRQSTISRFACRILCDRNEPY-------TARIYAAGFDSSKNIFLGEKAAKW 184 (429) T ss_pred CCCCCEEEECCCCCCCCCCCCH------HHHHHHHHHEEEEEECCCCCC-------CEEEEECCCCCCCCEECCCHHHCC T ss_conf 8874369961567886555402------556566554002331368965-------036774135655633304132114 Q ss_pred HHCCC---CCCCCCCEEECCCC Q ss_conf 31001---11224503544885 Q gi|254780707|r 156 SEIRP---DFPEVRIAIYVPSG 174 (346) Q Consensus 156 ~~~~~---~lp~~~I~~~~r~~ 174 (346) .+.++ .|.-.-+.+.||.+ T Consensus 185 ~~~dg~mDGLTTNGVLvmHPk~ 206 (429) T KOG3842 185 KTSDGEMDGLTTNGVLVMHPKG 206 (429) T ss_pred CCCCCCCCCCCCCCEEEECCCC T ss_conf 3788630241006669973588 No 150 >PRK10260 hypothetical protein; Provisional Probab=22.82 E-value=50 Score=13.32 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=19.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9248999999999999831420137 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR 25 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~ 25 (346) ||+.+..+++++.+.+.+|.++.|. T Consensus 1 ~~~~~~~~~~~~~~~~~f~~~a~A~ 25 (306) T PRK10260 1 MNMKLKTLFAAAFAVVGFCSTASAV 25 (306) T ss_pred CCCCHHHHHHHHHHHHHHCCHHHCE T ss_conf 9520999999999999857610201 No 151 >PRK08223 hypothetical protein; Validated Probab=22.69 E-value=51 Score=13.31 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=59.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEE--ECCC---CCCHHHHHHHHHCCCCCCEEEEEE Q ss_conf 89999999999987798079998157620578988521013353012--1332---024767876762487872466652 Q gi|254780707|r 37 FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIV--NSSR---KITQNELDECKKHGVSDIQEVTIG 111 (346) Q Consensus 37 ~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig--~ssr---~l~~~E~~~~~~~~~~~~~~~~v~ 111 (346) .|=.+..++.-.+.||++++..+...=+..-+..|++| +|+. ++|- +.+-.-.+.|...++..+..-+++ T Consensus 80 ~~Kveva~e~l~~INP~v~V~~~~~~lt~~N~~~~l~~-----~DvVvDg~DnF~~~tR~ll~~ac~~~giP~v~~a~l~ 154 (287) T PRK08223 80 RPKVEVMREIALDINPELEIRAFPEGIGKENLDTFLDG-----VDVYVDGLDFFVFDIRRLLFREAQARGIPALTAAPLG 154 (287) T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 85899999999986989879995878998999999867-----9999979667883189999999998599849831541 Q ss_pred CCCCEEEECCCCCC Q ss_conf 15412554166654 Q gi|254780707|r 112 HDGILLVSDRDMVS 125 (346) Q Consensus 112 ~d~i~i~~n~~~~~ 125 (346) .++-+.+++++++. T Consensus 155 f~gq~~vF~P~g~~ 168 (287) T PRK08223 155 FSTAWLVFDPGGMS 168 (287) T ss_pred CCCEEEEECCCCCC T ss_conf 03069998899978 No 152 >PRK10159 outer membrane phosphoporin protein E; Provisional Probab=22.54 E-value=51 Score=13.29 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=17.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEEECCH Q ss_conf 9248999999999999831420137-------6799980342 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFAR-------NRIRIAGSST 35 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~-------~~I~i~GSst 35 (346) ||+.++.+++.+ +++++++.|. ++|.|.|.-- T Consensus 1 MKk~~lA~ai~a---~l~s~~a~AaeVYn~dg~~ldigGrv~ 39 (351) T PRK10159 1 MKKSTLALVVMG---IVASASVQAAEIYNKDGNKLDVYGKVK 39 (351) T ss_pred CCHHHHHHHHHH---HHHCCCCCEEEEEECCCCEEEEEEEEE T ss_conf 947389999999---987265317999978998897835898 No 153 >PRK11482 putative DNA-binding transcriptional regulator; Provisional Probab=22.35 E-value=52 Score=13.27 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=62.4 Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487 Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346) Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346) .+.+++|+.+..+.. ++..+...+.+..|++.+..+. +......+..|. +|++....+..+. T Consensus 64 ~~~~~~i~~~~~~~~~~lp~l~~~l~~~aP~i~l~~~~---~~~~~~~L~~~~----~Dl~i~~~~~~~~---------- 126 (266) T PRK11482 64 KQRTITIATTPSVGALVLPVIYQAIKPHYPQLLLRNIP---ISDAENQLSQFQ----TDLIIDTHSCTNR---------- 126 (266) T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHCCC----CCEEEECCCCCCC---------- T ss_conf 65259999758899999999999999779986999568---657889985699----8889856888987---------- Q ss_pred CCCEEEEEECCCCEEEECCCCCCC--CCCHHHHH Q ss_conf 872466652154125541666545--68888888 Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSV--SLTVEDLY 134 (346) Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~--~lt~~~l~ 134 (346) .+...++..|..+++..++.|.. .+|.+++. T Consensus 127 -~~~~~~L~~d~~v~v~~~~HP~~~~~~t~e~~~ 159 (266) T PRK11482 127 -TIQHHVLFTDNMVLVCRQGHPCLSLEDDEETLD 159 (266) T ss_pred -CEEEEEEEECCEEEEEECCCCCCCCCCCHHHHH T ss_conf -638999994288999989685569999999996 No 154 >PRK10632 putative DNA-binding transcriptional regulator; Provisional Probab=22.34 E-value=52 Score=13.26 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=45.4 Q ss_pred CCCCCEEEEEECCHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC Q ss_conf 013767999803425-8999999999998779807999815762057898852101335301213320247678767624 Q gi|254780707|r 22 TFARNRIRIAGSSTL-FPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH 100 (346) Q Consensus 22 ~~a~~~I~i~GSst~-~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~ 100 (346) .....+|+|+=+.++ ..++..+-.+|.+.||++++....... ...+.... +|++...-++.+.. T Consensus 88 ~~~~G~LrI~~~~~~~~~~l~~~l~~f~~~yP~i~l~l~~~~~----~~dl~~~~----~Diair~g~~~~~~------- 152 (309) T PRK10632 88 NTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIP----APDLIADG----LDVVIRVGALQDSS------- 152 (309) T ss_pred CCCCEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEECCCC----CCCHHHCC----CCCCEEECCCCCCC------- T ss_conf 7874058841571776623061567888768984257761687----46355505----53103407889988------- Q ss_pred CCCCCEEEEEECCCCEEEECC Q ss_conf 878724666521541255416 Q gi|254780707|r 101 GVSDIQEVTIGHDGILLVSDR 121 (346) Q Consensus 101 ~~~~~~~~~v~~d~i~i~~n~ 121 (346) +...+++....+++..+ T Consensus 153 ----l~ar~L~~~~~~l~Asp 169 (309) T PRK10632 153 ----LFSRRLGAMPMVVCAAK 169 (309) T ss_pred ----EEEEEEEECCCEEEECH T ss_conf ----38999140450587278 No 155 >TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699 Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process. Probab=22.29 E-value=30 Score=14.55 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=6.7 Q ss_pred CCEEECCCCC---CCHHHHH Q ss_conf 5035448854---2357899 Q gi|254780707|r 166 RIAIYVPSGK---HGTREVL 182 (346) Q Consensus 166 ~I~~~~r~~~---SGT~~~F 182 (346) |=+++++... |++.|++ T Consensus 66 pARlfG~K~~~lPg~~vE~L 85 (364) T TIGR00113 66 PARLFGRKESFLPGGKVEVL 85 (364) T ss_pred CCCCCCCCCCCCCCCEEEEE T ss_conf 10001251101887407998 No 156 >PRK03002 prsA peptidylprolyl isomerase; Reviewed Probab=21.84 E-value=53 Score=13.21 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=20.1 Q ss_pred CCHHHHHHHH--HHHHHHHHCCCCCCCCEEEEEECCHH--HHHHHHHHHH Q ss_conf 9248999999--99999983142013767999803425--8999999999 Q gi|254780707|r 1 MRFFFVVLMC--FVVLEVYCGTGTFARNRIRIAGSSTL--FPYSKIIAEN 46 (346) Q Consensus 1 Mk~~~~~~~~--~~~l~~~~~~~~~a~~~I~i~GSst~--~P~~~~~a~~ 46 (346) ||+..+++++ ++++++.+|+.....++|--.+...+ .-|+..+-+. T Consensus 1 mkkK~i~~~~~~~svl~LaaC~~~~~~~~VAtv~g~~IT~~df~~~lk~~ 50 (285) T PRK03002 1 MRGKHIFIITALISILMLSACGQKNSSATVATATDSTITKSDFEKQLKDR 50 (285) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECHHHHHHHHHHH T ss_conf 96018999999999999998457999977998689787399999999988 No 157 >pfam04710 Pellino Pellino. Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase. Probab=21.74 E-value=48 Score=13.43 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=51.8 Q ss_pred CCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC-CHHHHHH Q ss_conf 530121332024767876762487872466652154125541666545688888887641025555532367-3023231 Q gi|254780707|r 79 TIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFN-PLKKWSE 157 (346) Q Consensus 79 ~~dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g-~i~~W~~ 157 (346) .+||..+|--.-..+.+. ..+.+-+|-..|--|+.....|- .++||++..+...+|++| +.++|++ T Consensus 107 ~IDFVV~DTvpG~~~~~~------~~~~qSTISRfACRI~~dR~pPy-------~ARiyAaGFDss~NIfLGekA~KW~~ 173 (416) T pfam04710 107 PIDFVVTDTVPGGQDKKE------TPITQSTISRFACRIVCDREPPY-------TARIYAAGFDSSKNIFLGEKAAKWQN 173 (416) T ss_pred CCCEEEECCCCCCCCCCC------CCCCCCHHHHEEEEEEECCCCCC-------EEEEEECCCCCCCCEEECCCCCCCCC T ss_conf 756698467678776554------66330231010577885268985-------46898503576673650554544447 Q ss_pred CCC---CCCCCCCEEECCCCC Q ss_conf 001---112245035448854 Q gi|254780707|r 158 IRP---DFPEVRIAIYVPSGK 175 (346) Q Consensus 158 ~~~---~lp~~~I~~~~r~~~ 175 (346) .++ +|--.-+.+.||..+ T Consensus 174 ~~~~mDGLTTNGVLimhP~~~ 194 (416) T pfam04710 174 PDGEMDGLTTNGVLVMHPRGG 194 (416) T ss_pred CCCCCCCCCCCCEEEECCCCC T ss_conf 898634642166599736888 No 158 >cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes. Probab=21.35 E-value=54 Score=13.15 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=11.0 Q ss_pred HHHHHHHHHCHHHCCCCCHHH----HCCCCCCC Q ss_conf 999999974987405220277----55963489 Q gi|254780707|r 301 LREYVSFSVSDEMMAPDSQLF----QYGLIPIS 329 (346) Q Consensus 301 ~~~Fl~~~ls~~~~~~~~~~~----~~GyvPLp 329 (346) +++=+.|++|++-.-.|.++. +-|||||. T Consensus 4 I~kQiEyYFSd~NL~~D~fL~~~m~~~g~Vpi~ 36 (75) T cd08031 4 LKRQLEYYFSRENLANDAYLLSQMDSDQYVPIW 36 (75) T ss_pred HHHHHHHHCCHHHHHCCHHHHHHHCCCCCEEHH T ss_conf 999899884686521389999973768978729 No 159 >PRK11023 hypothetical protein; Provisional Probab=20.75 E-value=56 Score=13.08 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=13.2 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9248999999999999831 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCG 19 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~ 19 (346) ||.+..+++++.++.+..| T Consensus 1 mk~~~~l~~l~~~~~L~GC 19 (191) T PRK11023 1 MKALSPLAVLISALLLQGC 19 (191) T ss_pred CCHHHHHHHHHHHHHHCCC T ss_conf 9448899999999997268 No 160 >PRK02944 OxaA-like protein precursor; Validated Probab=20.41 E-value=57 Score=13.03 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=22.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-----HHHHHHH Q ss_conf 9248999999999999831420137679998034-----2589999 Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSS-----TLFPYSK 41 (346) Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSs-----t~~P~~~ 41 (346) |||.+.++.+++++.+..++|......++-..+. .++|+.. T Consensus 1 mkk~~~~~~~~~~~~~~lsgC~~~~~~~~~~~~g~~~~~~v~p~~~ 46 (255) T PRK02944 1 MKKKLGLLAMVVALMAILAGCSEVNQPITPKSTGIWNEYFVYPLSQ 46 (255) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 9289999999999999996246889999999998189999999999 Done!