HHsearch results for GI: 254780707 and protein with PDBid: 1twy_A

>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=100.00  E-value=0  Score=313.39  Aligned_cols=277  Identities=21%  Similarity=0.354  Sum_probs=223.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             92489999999999998314201376799980342589999999999987798079998157620578988521013353
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTI   80 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~   80 (346)
                      |+++.+.+++++++++.+.++....++|+|+||++++|+++.|+++|+++||++++ .++.+||+.|++++++|.    +
T Consensus         3 ~~~~~l~~~~a~~~~~~~~~~~a~~~~i~i~gs~s~~~l~~~l~~~f~~~~P~~~v-~~~~~gSg~~~~~l~~g~----~   77 (290)
T 1twy_A            3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVARIMDVLAEKYNQQHPETYV-AVQGVGSTAGISLLKKGV----A   77 (290)
T ss_dssp             -------------------------CEEEEEECHHHHHHHHHHHHHHHHHCTTCEE-EEEESCHHHHHHHHHTTS----C
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHHHHHCC----C
T ss_conf             68999999999999998354302488699996054999999999999988889579-997168679999998268----6


Q ss_pred             CEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             01213320247678767624878724666521541255416665456888888876410255555323673023231001
Q gi|254780707|r   81 DIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP  160 (346)
Q Consensus        81 dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~  160 (346)
                      ||+.++|+++++|.+.       .+...++++|++++++|++|+..++|.+||.++|           .|+|++|+|+++
T Consensus        78 di~~~s~~~~~~e~~~-------~~~~~~ia~~~~~ivv~~~n~~~~ls~~~L~~i~-----------~g~it~W~~~~~  139 (290)
T 1twy_A           78 DIAMTSRYLTESEAQN-------TLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIY-----------KGQITNWKQVGG  139 (290)
T ss_dssp             SEEEESSCCCTTTCCT-------TCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHH-----------HTSCCBGGGGTS
T ss_pred             CCCCCCCCCHHHHHHC-------CCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHH-----------CCCCCCHHHCCC
T ss_conf             4122554001346634-------5056778860257640577852345898985644-----------287675310489


Q ss_pred             CCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCC
Q ss_conf             11224503544885423578999885134555654101111101366000134443102466402116623677763101
Q gi|254780707|r  161 DFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV  240 (346)
Q Consensus       161 ~lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~  240 (346)
                        |+.+|.++.|+++|||+..|.+.+............                     .........+.+..+.+.+..
T Consensus       140 --~~~~i~~~~r~~~Sgt~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~v~~  196 (290)
T 1twy_A          140 --NDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVS---------------------DVAPTALVVNSNSMMKTLVNH  196 (290)
T ss_dssp             --CSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEE---------------------CSCTTSEEESSHHHHHHHHHH
T ss_pred             --CCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCC---------------------CCCCCEEEECCCHHHHHHHHC
T ss_conf             --988417852799972799999996104421212102---------------------357712794384899999964


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHH
Q ss_conf             53210013320011001110013445767895560279875036789997078856688999999997498740522027
Q gi|254780707|r  241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQL  320 (346)
Q Consensus       241 ~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~  320 (346)
                      ++++|||+++++...   .++.+.++++.|+.++|.+|+|||+||+|+|++..+  ..+.+++|++|++|+++|.   ++
T Consensus       197 ~~~aig~~~~~~~~~---~vk~l~i~~v~Ps~~~i~~g~YPl~~~~~~i~~~~~--~~~~a~~Fi~fl~S~~gq~---ii  268 (290)
T 1twy_A          197 NTQAVGFISIGSVDK---SVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDN--ADEQTKEFIAFLKSESAKK---LI  268 (290)
T ss_dssp             CTTEEEEEEGGGCCT---TSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTT--CCHHHHHHHHHHHSHHHHH---HH
T ss_pred             CCCCEEEEEEEECCC---CCCEEEECCCCCCHHHHHCCCCCCEEEEEEEEECCC--CCHHHHHHHHHHHCHHHHH---HH
T ss_conf             888517877520047---742655437689977885499871789999996899--9999999999980998899---99


Q ss_pred             HHCCCCCCCHH
Q ss_conf             75596348999
Q gi|254780707|r  321 FQYGLIPISNE  331 (346)
Q Consensus       321 ~~~GyvPLp~~  331 (346)
                      ++.||||+++.
T Consensus       269 ~~~Gfvp~~~~  279 (290)
T 1twy_A          269 VEYGYIMPSDV  279 (290)
T ss_dssp             HHTTCBCC---
T ss_pred             HHCCCCCCHHH
T ss_conf             98859977544