HHsearch results for GI: 254780707 and protein with PDBid: 3oxn_A
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.85 E-value=0.15 Score=26.20 Aligned_cols=90 Identities=8% Similarity=-0.006 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 201376799980342589-9999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r 21 GTFARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK 99 (346)
Q Consensus 21 ~~~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~ 99 (346)
++..+.+++|+.+.++.. ++..+...|.+.+|++.+. +....+..-.+.+.+|. +|++....+..+.
T Consensus 14 P~~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~-l~~~~~~~~~~~L~~g~----iDl~I~~~~~~~~------- 81 (241)
T 3oxn_A 14 PQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFN-FLPLQHDRLSDQLTYEG----ADLAICRPTGPVE------- 81 (241)
T ss_dssp CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEE-EEECCGGGHHHHHHTSC----CSEEEECCSSCCT-------
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCC-------
T ss_conf 20068689999737999999999999999988692899-99798799999997598----5422202678741-------
Q ss_pred CCCCCCEEEEEECCCCEEEECCCCCCC
Q ss_conf 487872466652154125541666545
Q gi|254780707|r 100 HGVSDIQEVTIGHDGILLVSDRDMVSV 126 (346)
Q Consensus 100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~ 126 (346)
.+...++..+..++++..+.|..
T Consensus 82 ----~l~~~~l~~~~~v~v~~~~HPl~ 104 (241)
T 3oxn_A 82 ----PLRSEILGRVGVLCLLSKQHPLA 104 (241)
T ss_dssp ----TEEEEEEECCCEEEEEETTSGGG
T ss_pred ----CCCCCCCCCCCCEEECCCCCHHH
T ss_conf ----01135432236402237665032