HHSEARCH alignment of GI: 254780707 and SCOP domain: d1al3a_

Alignment
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Probab=97.55  E-value=0.0017  Score=35.70  Aligned_cols=201  Identities=10%  Similarity=0.041  Sum_probs=112.4

Q ss_pred             CCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             76799980342589-99999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r   25 RNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS  103 (346)
Q Consensus        25 ~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~  103 (346)
                      +++|+|+-+.++.. ++-..-.+|.+.||++++. +....|..-++.+.+|.    +|||....+....          .
T Consensus         5 ~G~LrIg~~~~~~~~~LP~~l~~f~~~~P~v~v~-l~~~~~~~l~~~l~~g~----~D~ai~~~~~~~~----------~   69 (237)
T d1al3a_           5 KGSLYVATTHTQARYALPGVIKGFIERYPRVSLH-MHQGSPTQIAEAVSKGN----ADFAIATEALHLY----------D   69 (237)
T ss_dssp             EEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEE-EEECCHHHHHHHHHTTC----CSEEEESSCCCTT----------S
T ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEEEECCCCC----------C
T ss_conf             6789999678899999999999999988891899-99898799999974337----7689996033333----------3


Q ss_pred             CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf             72466652154125541666545688888887641025555532367302323100111224503544885423578999
Q gi|254780707|r  104 DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLE  183 (346)
Q Consensus       104 ~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~  183 (346)
                      .+...++..+..++++.++.+....                      +...|.|+    .+.|+..+  +.+++.+..+.
T Consensus        70 ~l~~~~l~~~~~~~v~~~~h~la~~----------------------~~~~~~dL----~~~p~i~~--~~~~~~~~~~~  121 (237)
T d1al3a_          70 DLVMLPCYHWNRSIVVTPEHPLATK----------------------GSVSIEEL----AQYPLVTY--TFGFTGRSELD  121 (237)
T ss_dssp             CEEEEEEEEECEEEEECTTSTTTTT----------------------SCCCHHHH----HTSEEEEE--CTTSTTHHHHH
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCCC----------------------CCCCCHHH----CCCCCCCC--CCCCHHHHHHH
T ss_conf             3334555432389999557311002----------------------34321021----15883011--34450799999


Q ss_pred             HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             88513455565410111110136600013444310246640211662367776310153210013320011001110013
Q gi|254780707|r  184 KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLV  263 (346)
Q Consensus       184 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~  263 (346)
                      +.....+...                             ......++...+.+.+ ....+++.++...+..    ..  
T Consensus       122 ~~~~~~g~~~-----------------------------~~~~~~~s~~~~~~~v-~~g~Gi~~~p~~~v~~----~~--  165 (237)
T d1al3a_         122 TAFNRAGLTP-----------------------------RIVFTATDADVIKTYV-RLGLGVGVIASMAVDP----VS--  165 (237)
T ss_dssp             HHHHHHTCCC-----------------------------EEEEEESSHHHHHHHH-HHTSCEEEEEGGGCCT----TT--
T ss_pred             HHHHHCCCCC-----------------------------CCEEECCCHHHHHHHH-CCCCEEEECHHHHHHH----HH--
T ss_conf             9999728987-----------------------------4005349999999974-0798787656986326----63--


Q ss_pred             CCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             44576789556027987503678999707885668899999999749
Q gi|254780707|r  264 PIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       264 ~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                           .+..-.+.-......+.+|+++.+. ....+.+++|++++..
T Consensus       166 -----~~~l~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~Fie~~~~  206 (237)
T d1al3a_         166 -----DPDLVKLDANGIFSHSTTKIGFRRS-TFLRSYMYDFIQRFAP  206 (237)
T ss_dssp             -----CTTSEEEECBTTBCCEEEEEEEETT-CCCCHHHHHHHHHHCT
T ss_pred             -----CCCEEEEECCCCCCCEEEEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             -----8987999787887631899999698-8569999999999998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Cofactor-binding fragment of LysR-type protein CysB
species: Klebsiella aerogenes [TaxId: 28451]