HHSEARCH alignment of GI: 254780707 and SCOP domain: d1i6aa_

Alignment
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}
Probab=96.65  E-value=0.014  Score=30.58  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             CEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             6799980342589-999999999987798079998157620578988521013353012133202476787676248787
Q gi|254780707|r   26 NRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSD  104 (346)
Q Consensus        26 ~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~  104 (346)
                      ++|+|+-+.++.+ ++..+-..|.++||++++. +....|..-+..+.+|.    .|++....+....+           
T Consensus         5 G~lrig~~~~~~~~~lp~~l~~f~~~~P~v~l~-i~~~~~~~~~~~l~~~~----~d~~~~~~~~~~~~-----------   68 (212)
T d1i6aa_           5 GPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMY-LHEAQTHQLLAQLDSGK----LDAVILALVKESEA-----------   68 (212)
T ss_dssp             EEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTS----CSEEEEECCGGGTT-----------
T ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCCC----HHHHHEECCCCCCC-----------
T ss_conf             899998377899999999999999988896899-99887755322232210----00000001112232-----------


Q ss_pred             CEEEEEECCCCEEEECCCCCC
Q ss_conf             246665215412554166654
Q gi|254780707|r  105 IQEVTIGHDGILLVSDRDMVS  125 (346)
Q Consensus       105 ~~~~~v~~d~i~i~~n~~~~~  125 (346)
                      +...++..+...++..++.+.
T Consensus        69 ~~~~~l~~~~~~~~~~~~hpl   89 (212)
T d1i6aa_          69 FIEVPLFDEPMLLAIYEDHPW   89 (212)
T ss_dssp             SEEEEEEEEEEEEEEETTSGG
T ss_pred             CCCEECCCCCEEEEEECCCHH
T ss_conf             120111222257875037721


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain
species: Escherichia coli [TaxId: 562]