HHSEARCH alignment of GI: 254780707 and SCOP domain: d1ixca2

Alignment
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=97.60  E-value=0.0014  Score=36.09  Aligned_cols=198  Identities=14%  Similarity=0.096  Sum_probs=110.4

Q ss_pred             CEEEEEECCH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             6799980342-589999999999987798079998157620578988521013353012133202476787676248787
Q gi|254780707|r   26 NRIRIAGSST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSD  104 (346)
Q Consensus        26 ~~I~i~GSst-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~  104 (346)
                      ++|+|+-+++ ...++..+..+|.+.||++++. +....+..-++.+.+|.    +|++....+.....           
T Consensus         2 G~lrIg~~~~~~~~~Lp~~l~~f~~~~P~v~l~-i~~~~~~~l~~~l~~g~----~D~~~~~~~~~~~~-----------   65 (205)
T d1ixca2           2 GELSVAYFGTPIYRSLPLLLRAFLTSTPTATVS-LTHMTKDEQVEGLLAGT----IHVGFSRFFPRHPG-----------   65 (205)
T ss_dssp             EEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTS----CSEEEESCCCCCTT-----------
T ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCCCHHHHHHHH----CCCCCCCCCCCCCH-----------
T ss_conf             689999896889999999999999988796899-99887744201102222----03221235443200-----------


Q ss_pred             CEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHH
Q ss_conf             24666521541255416665456888888876410255555323673023231001112245035448854235789998
Q gi|254780707|r  105 IQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEK  184 (346)
Q Consensus       105 ~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~  184 (346)
                      ............++.....+....                      +...+.+    +...+...+.+..++..++.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  119 (205)
T d1ixca2          66 IEIVNIAQEDLYLAVHRSQSGKFG----------------------KTCKLAD----LRAVELTLFPRGGRPSFADEVIG  119 (205)
T ss_dssp             EEEEEEEEEEEEEEEEGGGGGGTC----------------------SEECGGG----GTTCEEEECCCSSSSCHHHHHHH
T ss_pred             HEEEECCCCCCCCCCCCCCCCCCC----------------------CCCCCCC----CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             000001212222232222222222----------------------2222220----02576410013666412444333


Q ss_pred             HHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf             85134555654101111101366000134443102466402116623677763101532100133200110011100134
Q gi|254780707|r  185 KVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVP  264 (346)
Q Consensus       185 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~  264 (346)
                      .....+...                             ......++...+.+.+. ...+++.++..........+..++
T Consensus       120 ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~-~g~gi~~lp~~~~~~~~~~l~~~~  169 (205)
T d1ixca2         120 LFKHAGIEP-----------------------------RIARVVEDATAALALTM-AGAASSIVPASVAAIRWPDIAFAR  169 (205)
T ss_dssp             HHHHTTCCC-----------------------------EEEEECSSHHHHHHHHH-TTSCBEEEEHHHHTSCCTTEEEEE
T ss_pred             HHHHCCCCC-----------------------------CCCCCCCCHHHHHHHCC-CCCEEEECCHHHHHCCCCCEEEEE
T ss_conf             332102222-----------------------------22222220256665314-464599851888701369889998


Q ss_pred             CCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             457678955602798750367899970788566889999999974
Q gi|254780707|r  265 IDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       265 ~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
                      ++            .-++.+++|++..+++  ..+.+++|++++.
T Consensus       170 l~------------~~~~~~~~~l~~~~~~--~~p~~~~fi~~l~  200 (205)
T d1ixca2         170 IV------------GTRVKVPISCIFRKEK--QPPILARFVEHVR  200 (205)
T ss_dssp             EC------------CTTCEEEEEEEEESSS--CCHHHHHHHHHHH
T ss_pred             CC------------CCCCEEEEEEEEECCC--CCHHHHHHHHHHH
T ss_conf             88------------9984469999997999--9999999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: LysR-type regulatory protein CbnR
species: Ralstonia eutropha [TaxId: 106590]