HHSEARCH alignment of GI: 254780707 and SCOP domain: d1pota_

Alignment
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}
Probab=97.43  E-value=0.0022  Score=35.05  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=47.0

Q ss_pred             CEEEEEE-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHHHHHCCCCCCCEEECCCCCCHHHHHHH------
Q ss_conf             6799980-3425899999999999877980799981576205-7898852101335301213320247678767------
Q gi|254780707|r   26 NRIRIAG-SSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSV-GLKEFCRGIGDDTIDIVNSSRKITQNELDEC------   97 (346)
Q Consensus        26 ~~I~i~G-Sst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~-Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~------   97 (346)
                      ++|+.-+ +..+   .+.+.++|+++| +++|. +...+++. -..++.++. +...|+...+-..-..-.+..      
T Consensus         2 ~~l~~~~w~~~~---~~~ii~~Fe~~t-gI~V~-~~~~~~~~~~~~~l~a~~-~~~~Dvv~~~~~~~~~~~~~g~~~~ld   75 (322)
T d1pota_           2 NTLYFYNWTEYV---PPGLLEQFTKET-GIKVI-YSTYESNETMYAKLKTYK-DGAYDLVVPSTYYVDKMRKEGMIQKID   75 (322)
T ss_dssp             EEEEEEEESSSS---CTTHHHHHHHHH-CEEEE-EEEESCHHHHHHHHTTCS-SSCSSBBCCBGGGHHHHHHHTCBCCCC
T ss_pred             CEEEEEECCCCC---CHHHHHHHHHHH-CCEEE-EEECCCHHHHHHHHHHCC-CCCCEEEEECHHHHHHHHHCCCCCCCC
T ss_conf             979999577636---989999999996-98799-995799999999998069-999809996807999987678523366


Q ss_pred             --------------HH--CCCCCCEEEEEECCCCEEEECCCC
Q ss_conf             --------------62--487872466652154125541666
Q gi|254780707|r   98 --------------KK--HGVSDIQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus        98 --------------~~--~~~~~~~~~~v~~d~i~i~~n~~~  123 (346)
                                    ..  ........+|+..+..++++|.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~l~Yn~~~  117 (322)
T d1pota_          76 KSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDA  117 (322)
T ss_dssp             TTSCTTGGGBCGGGSCCTTSTTCSSCEEEEEEEEEEEEETTT
T ss_pred             HHHCCHHHCCCHHHHCCCCCCCCCEEEEEEEEEEEEEEHHHH
T ss_conf             222000210486652144589983684466423346742544


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]