HHSEARCH alignment of GI: 254780707 and SCOP domain: d1twya_

Alignment
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=100.00  E-value=0  Score=296.87  Aligned_cols=248  Identities=23%  Similarity=0.387  Sum_probs=209.3

Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             67999803425899999999999877980799981576205789885210133530121332024767876762487872
Q gi|254780707|r   26 NRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDI  105 (346)
Q Consensus        26 ~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~~  105 (346)
                      .+|+|.||++++|+++.|+++|++.||++++ .++..||+.|++++++|.    +||++++|+++++|.+.       .+
T Consensus         1 ~~i~i~GS~s~~~~~~~l~~~f~~~~p~~~v-~v~~~gS~~~~~~l~~g~----~di~~~s~~~~~~e~~~-------~~   68 (249)
T d1twya_           1 SEITISGSTSVARIMDVLAEKYNQQHPETYV-AVQGVGSTAGISLLKKGV----ADIAMTSRYLTESEAQN-------TL   68 (249)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHHHHCTTCEE-EEEESCHHHHHHHHHTTS----CSEEEESSCCCTTTCCT-------TC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHHHHCCC----CEEEECCCCHHHHHHHC-------CE
T ss_conf             9699995160999999999999988879379-997078579999997599----72552342123454220-------02


Q ss_pred             EEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             46665215412554166654568888888764102555553236730232310011122450354488542357899988
Q gi|254780707|r  106 QEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKK  185 (346)
Q Consensus       106 ~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~~  185 (346)
                      ..+++++|++++++|++||..++|.+||.+||.           |++++|+|+++  |+.+|.++.|+++|||+..|.++
T Consensus        69 ~~~~ia~d~lviiv~~~np~~~lt~~ql~~I~~-----------g~i~~W~~~~~--~~~~i~~~~r~~~Sgt~~~f~~~  135 (249)
T d1twya_          69 HTFTLAFDGLAIVVNQANPVTNLTREQLYGIYK-----------GQITNWKQVGG--NDQKIAVVTREASSGTRYSFESL  135 (249)
T ss_dssp             EEEEEEEEEEEEEECTTCCCCEECHHHHHHHHH-----------TSCCBGGGGTS--CSCBCEEEEECTTCHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-----------HHCCCHHHHCC--CCCCCCEECCCCCCHHHHHHHHH
T ss_conf             457888503012236431112255778876454-----------20021233212--23444200278883089999999


Q ss_pred             HCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf             51345556541011111013660001344431024664021166236777631015321001332001100111001344
Q gi|254780707|r  186 VLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPI  265 (346)
Q Consensus       186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~  265 (346)
                      +............                     .........+.+.++.+.+..++++|||++++++..   .++.+.+
T Consensus       136 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~v~~~~~aig~~~~~~~~~---~~k~l~i  191 (249)
T d1twya_         136 MGLTKTVKDREVS---------------------DVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDK---SVKAIQF  191 (249)
T ss_dssp             HTCEEEETTEEEE---------------------CSCTTSEEESSHHHHHHHHHHCTTEEEEEEGGGCCT---TSEECEE
T ss_pred             HCCCCCCCCCCCC---------------------CCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCC---CCHHHHC
T ss_conf             7104321221001---------------------246613884382899999964877507987300236---4023301


Q ss_pred             CCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCC
Q ss_conf             57678955602798750367899970788566889999999974987405220277559634
Q gi|254780707|r  266 DGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIP  327 (346)
Q Consensus       266 ~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvP  327 (346)
                      +++.|+.++|.+|+|||+|++|+|++..+  ..+.+++|++|++|+++|.   ++++.||||
T Consensus       192 ~~~~ps~~~i~~g~YPl~r~~~~~~~~~~--~~~~a~~Fi~f~~S~~gq~---ii~~~G~v~  248 (249)
T d1twya_         192 EKADPTSDNIAKHTYQLSRPFLILHYSDN--ADEQTKEFIAFLKSESAKK---LIVEYGYIM  248 (249)
T ss_dssp             TTBCCCHHHHHTTCSCCEEEEEEEECTTT--CCHHHHHHHHHHHSHHHHH---HHHHTTCBC
T ss_pred             CCCCCCHHHHCCCCCCCEEEEEEEEECCC--CCHHHHHHHHHHHCHHHHH---HHHHCCCCC
T ss_conf             34555433211588872568999997999--9999999999981988899---999679999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ABC transporter, periplasmic substrate-binding protein VCA0807
species: Vibrio cholerae [TaxId: 666]