HHSEARCH alignment of GI: 254780707 and SCOP domain: d2fyia1

Alignment
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=97.99  E-value=0.00032  Score=39.71  Aligned_cols=201  Identities=12%  Similarity=0.078  Sum_probs=117.6

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ..++|+|+-+.+... ++..+...|.+.||++++. +....+..-.+.+.+|.    +|+|.+..+....          
T Consensus         4 ~sG~l~i~~~~~~~~~~Lp~~l~~f~~~~P~i~l~-i~~~~~~~~~~~l~~g~----~Di~i~~~~~~~~----------   68 (220)
T d2fyia1           4 TSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLE-LIQGTPQEIATLLQNGE----ADIGIASERLSND----------   68 (220)
T ss_dssp             CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTS----CSEEEESSSSTTC----------
T ss_pred             CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHHHH----HHHHHHCCCCCCC----------
T ss_conf             97889999878999999999999999988895899-99887088999987634----3333200111222----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                      ..+...++..+.++++...+.+....                      +...|.|+    .+.|+..+  .++++.+..+
T Consensus        69 ~~~~~~~l~~~~~~~v~~~~~~~~~~----------------------~~~~~~dL----~~~~~i~~--~~~~~~~~~~  120 (220)
T d2fyia1          69 PQLVAFPWFRWHHSLLVPHDHPLTQI----------------------SPLTLESI----AKWPLITY--RQGITGRSRI  120 (220)
T ss_dssp             TTEEEEEEEEECEEEEEETTCGGGTS----------------------SSCCHHHH----TTSCEEEE--CTTSTTHHHH
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCC----------------------CCCHHHHH----CCCCCCCC--CCCCCHHHHH
T ss_conf             21112332233321442565443445----------------------75202332----00123322--2343158899


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100-11100
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVLK  261 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~~  261 (346)
                      .+.....+...                             ...-..++...+...+... .+++.++...+... ...+.
T Consensus       121 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~g-~gi~ilp~~~~~~~~~~~l~  170 (220)
T d2fyia1         121 DDAFARKGLLA-----------------------------DIVLSAQDSDVIKTYVALG-LGIGLVAEQSSGEQEEENLI  170 (220)
T ss_dssp             HHHHHHTTCCC-----------------------------CEEEEESSHHHHHHHHHHT-SCEEEEEGGGGSTTCCTTEE
T ss_pred             HHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHHC-CEEEECCHHHHHHHHCCCEE
T ss_conf             88776404677-----------------------------6147870478889987633-56886769999987448879


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             1344576789556027987503678999707885668899999999749
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      .+      |      ....+..+.+|++.++ +....+.++.|++|+-.
T Consensus       171 ~l------~------~~~~~~~~~~~l~~~~-~~~~~~~~~~Fi~~~~~  206 (220)
T d2fyia1         171 RL------D------TRHLFDANTVWLGLKR-GQLQRNYVWRFLELCNA  206 (220)
T ss_dssp             EE------C------CTTTSCCEEEEEEEET-TCCBCHHHHHHHHHHCS
T ss_pred             EE------E------CCCCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf             98------5------7787774089999979-88689999999999987


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: LysR-type regulatory protein Cbl
species: Escherichia coli [TaxId: 562]