RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding
periplasmic protein [Candidatus Liberibacter asiaticus str. psy62]
(346 letters)
>gnl|CDD|162722 TIGR02136, ptsS_2, phosphate binding protein. Members of this
family are phosphate-binding proteins. Most are found in
phosphate ABC-transporter operons, but some are found in
phosphate regulatory operons. This model separates
members of the current family from the phosphate ABC
transporter phosphate binding protein described by
TIGRFAMs model TIGR00975.
Length = 287
Score = 124 bits (314), Expect = 2e-29
Identities = 81/302 (26%), Positives = 133/302 (44%), Gaps = 53/302 (17%)
Query: 28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR 87
I I GS+T+ P ++ AE F + P V+ GS G+K G T+DI NSSR
Sbjct: 38 ITIDGSTTVAPLAEAAAEEFQKIHPGVSVT-VQGAGSGTGIKALING----TVDIGNSSR 92
Query: 88 KITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSV-SLTVEDLYKALASYLIVDDK 146
I EL + K+ G+ I E + DG+ +V ++ V V LTVE L K I +
Sbjct: 93 PIKDEELQKDKQKGIKLI-EHKVAVDGLAVVVNKKNVPVDDLTVEQLKK------IYSGE 145
Query: 147 VVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKY 206
+ W E+ D P I + + GTR+ E++V+ + +
Sbjct: 146 I-----TNWKEVGGDLPNKPIVVVGRNAGSGTRDTFEEEVMGK-----------AKIKPG 189
Query: 207 NVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPID 266
+Q S +G + + N G++GL + ++ LK ++
Sbjct: 190 KNEQES--------NGAVVS----------IVSSNPGAIGYLGLGYVDDSVKTLK---VN 228
Query: 267 GIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLI 326
G+ PS I +G YP+SRPL YV + L + E++ F +SD+ + + + G +
Sbjct: 229 GVEPSKENIANGSYPLSRPLFMYVNGKPKKPEL-VAEFIDFVLSDD--GGERIVEELGYV 285
Query: 327 PI 328
P+
Sbjct: 286 PL 287
>gnl|CDD|178679 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 29.4 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 194 SRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLA 236
S+ +K R F + LSVA V +GI + VDG + + A
Sbjct: 288 SQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVDGKHITSFA 330
>gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 29.1 bits (65), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 138 ASYLIVDDKVVFNPLKKWSEIRPDFPEVRI 167
AS LIVDD +FN L + R +F
Sbjct: 518 ASVLIVDDPEIFNALIRQMRFRFEFEFKSF 547
>gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated.
Length = 341
Score = 28.9 bits (65), Expect = 2.0
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPD 161
VS ++ VT D +L +++ +E++++ A L +D +++ LKK RPD
Sbjct: 39 VSALKGVT---DKLLKLAETFDKEALEEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPD 95
Query: 162 FPE 164
P
Sbjct: 96 LPS 98
>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated.
Length = 256
Score = 28.5 bits (64), Expect = 2.3
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 206 YNVQQLSVACTSVRQDG---IAIEVD-GDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261
YN + A + +DG IA++ D D + A + D FG L+ NNA V
Sbjct: 34 YNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG--DLNVVVNNAGVAP 91
Query: 262 LVPIDGIVP 270
PI+ I
Sbjct: 92 TTPIETITE 100
>gnl|CDD|180422 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 27.6 bits (62), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 155 WSEIRPDF------PEVRIAIYVPSGKH 176
WSE+ F PEVR + SGKH
Sbjct: 35 WSELPEIFRWLDADPEVRAVVLSGSGKH 62
>gnl|CDD|184890 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 27.6 bits (62), Expect = 5.2
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 223 IAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGL-YP 281
AIE+D E L E+ + D LK V +P +VS L Y
Sbjct: 55 YAIELDPRLAEFLRDDEIAAGNVEII-------EGDALK-VD----LPEFNKVVSNLPYQ 102
Query: 282 ISRPLLF 288
IS P+ F
Sbjct: 103 ISSPITF 109
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 257 ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQH 294
+ V +L GI P + TI+ G P S+ YV+ +H
Sbjct: 26 SGVERLKSNRGITPGLATILVGDDPASK---MYVRLKH 60
>gnl|CDD|177782 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 27.1 bits (60), Expect = 6.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 293 QHFNSVLGLREYVSFSVSDEMMAP 316
Q NSV GLRE+ FS +DE AP
Sbjct: 378 QMLNSVAGLREW--FSQTDERGAP 399
>gnl|CDD|129249 TIGR00144, beta_RFAP_syn, beta-RFAP synthase. This protein family
contains several archaeal examples of
beta-ribofuranosylaminobenzene 5-prime-phosphate
synthase (beta-RFAP synthase), an enzyme involved in
methanopterin biosynthesis. In some species, two members
of this family are found. It is unclear whether both act
as beta-RFAP synthase. This family is related to the
GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase). Members
are found so far only in the Archaea and in
Methylobacterium extorquens.
Length = 324
Score = 27.1 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 159 RPDFPEVRIAIYVPSGKH--GTREVLEKKVLQEGC 191
R DFP+ I + +P G REV + Q+ C
Sbjct: 176 RYDFPDWNIILAIPEIDSVSGRREV---NIFQKYC 207
>gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.8 bits (60), Expect = 8.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 138 ASYLIVDDKVVFNPLKK 154
S L+VDD+ +F LKK
Sbjct: 541 LSVLLVDDEKLFESLKK 557
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH by HflKC appears to be
negative (PubMed:8947034,PubMed:96367).
Length = 261
Score = 27.0 bits (60), Expect = 8.1
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 94 LDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVE----DLYKAL 137
++E V+ ++ + G++L D ++V+V + V+ D YK L
Sbjct: 33 IEEVYPVNVTAVRN--LRKQGLMLTGDENIVNVEMNVQYRITDPYKYL 78
>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori.
Length = 566
Score = 26.9 bits (60), Expect = 8.6
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 199 KMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD 258
+ R++F ++ + + + ++G ETLAR+ ++ D F + G S
Sbjct: 211 EARELFV-KLESGDEEAIKLWKRLVEYSLEG-IKETLARLNIHFDSFVWEGESVKNGMVP 268
Query: 259 VL 260
+
Sbjct: 269 KV 270
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,714,913
Number of extensions: 375893
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 14
Length of query: 346
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 252
Effective length of database: 3,963,321
Effective search space: 998756892
Effective search space used: 998756892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)