RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] (346 letters) >1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 Length = 350 Score = 119 bits (298), Expect = 1e-27 Identities = 46/353 (13%), Positives = 96/353 (27%), Gaps = 58/353 (16%) Query: 20 TGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDT 79 T + + GS+ L+P + F E +P T + GS G+ + G T Sbjct: 21 TPASSPVTLAETGSTLLYPLFNLWGPAFHERYPNV-TITAQGTGSGAGIAQAAAG----T 75 Query: 80 IDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALAS 139 ++I S +++ ++ K + + + + + VS L + A Sbjct: 76 VNIGASDAYLSEGDMAAHKG-----LMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMY 130 Query: 140 YLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSK 199 K +P + P + S G + + + ++ Sbjct: 131 Q--GTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPG 188 Query: 200 MRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN--- 256 + + +G A ++G+SF Sbjct: 189 FGTTVDFP----------AVPGALGENGNGGMVTGCAE---TPGCVAYIGISFLDQASQR 235 Query: 257 --------------------------ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYV 290 A P + + + YPI V Sbjct: 236 GLGEAQLGNSSGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAIV 295 Query: 291 KRQHFNSVLG--LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341 + ++ L+ ++ ++++D S L Q P+ K IA Sbjct: 296 NNRQKDAATAQTLQAFLHWAITDG--NKASFLDQVHFQPLPPAVVKLSDALIA 346 >1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X Length = 321 Score = 116 bits (291), Expect = 7e-27 Identities = 41/340 (12%), Positives = 88/340 (25%), Gaps = 60/340 (17%) Query: 28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR 87 + AG++ P A+ + + + GSS G+K+ T+D S Sbjct: 4 LTGAGATFPAPVYAKWADTYQKETG--NKVNYQGIGSSGGVKQIIAN----TVDFGASDA 57 Query: 88 KITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKV 147 ++ ++ + G+ V G + + + L + L K Sbjct: 58 PLSD---EKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLG----KIKK 110 Query: 148 VFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYN 207 + P IA+ + GT V + + +K N Sbjct: 111 WDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNE-----------EWKNN 159 Query: 208 VQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADV---LKLVP 264 V T A ++ G+V ++ K N L Sbjct: 160 V------GTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISAD 213 Query: 265 IDGIVPSMGTIVSGL---------------------YPISRPLLFYVKRQHFNSVLG--L 301 + P+ + +PI+ + + G + Sbjct: 214 GKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEV 273 Query: 302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341 ++ ++ Q + + + VR + Sbjct: 274 LKFFDWAYKTG----AKQANDLDYASLPDSVVEQVRAAWK 309 >1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1 Length = 290 Score = 91.7 bits (226), Expect = 2e-19 Identities = 57/332 (17%), Positives = 117/332 (35%), Gaps = 54/332 (16%) Query: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60 + + +C ++ + T + I I+GS+++ ++AE +++ PE V+ Sbjct: 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVARIMDVLAEKYNQQHPETYVA-VQ 61 Query: 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120 GS+ G+ DI +SR +T+ + + T+ DG+ +V + Sbjct: 62 GVGSTAGISLLK----KGVADIAMTSRYLTE-------SEAQNTLHTFTLAFDGLAIVVN 110 Query: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180 + +LT E LY + + W ++ + +IA+ GTR Sbjct: 111 QANPVTNLTREQLY-----------GIYKGQITNWKQVGGNDQ--KIAVVTREASSGTRY 157 Query: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240 E + V+ R S + V + + Sbjct: 158 SFESLMGLTKTVKDREVSDVAPTA---------------------LVVNSNSMMKTLVNH 196 Query: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300 N GF+ + + ++ + P+ I Y +SRP L + + Sbjct: 197 NTQAVGFISIGSVDKSVKAIQ---FEKADPTSDNIAKHTYQLSRPFLILHYSDNADE--Q 251 Query: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEE 332 +E+++F S+ + +YG I S+ E Sbjct: 252 TKEFIAFLKSESAKK---LIVEYGYIMPSDVE 280 >3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A 2v3q_A 2cap_A Length = 381 Score = 81.2 bits (199), Expect = 3e-16 Identities = 36/380 (9%), Positives = 84/380 (22%), Gaps = 88/380 (23%) Query: 28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRG--------IGDDT 79 I G++ + + F GS G F + + Sbjct: 3 INGGGATLPQA----LYQTSGVLTAGFAQ--YIGVGSGNGKAAFLNNDYTKFQAGVTNKN 56 Query: 80 IDIVNSSRKITQNELDECKKHG---VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKA 136 + S K++ EL + +V + + ++ + Sbjct: 57 VHWAGSDSKLSATELSTYASAKQPTWGKLIQVPSVGTSVAIPFNKSGSAAVNLSVQ---- 112 Query: 137 LASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRN 196 V + W I I + S GT E+ + + + + N Sbjct: 113 ------ELCGVFSGRINTWDGISGSGRTGPIVVVYRSESSGTTELFTRFLNAKCNAETGN 166 Query: 197 FSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN 256 F+ S A+ G + + ++ F Sbjct: 167 FAVTTTFGTSF---------SGGLPAGAVAATGS-QGVMTALAAGDGRITYMSPDFAAPT 216 Query: 257 ADVLKLVPIDG-----IVPSMGTI------------------------------------ 275 L + + + Sbjct: 217 LAGLDDATKVARVGKNVATNTQGVSPAAANVSAAIGAVPVPAAADRSNPDAWVPVFGPDN 276 Query: 276 -------VSGLYPISRPLLFYVKRQHFNSVLG--LREYVSFSVSDEMMAPDSQLFQYGLI 326 + YPI + + ++ +R++ + D+ + + Sbjct: 277 TAGVQPYPTSGYPILGFTNLIFSQCYADATQTTQVRDFFTKHYGASNNN-DAAITANAFV 335 Query: 327 PISNEERKSVRDSIAVGKSG 346 P+ + +VR S + Sbjct: 336 PLPTAWKATVRASFLTASNA 355 >3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS} Length = 294 Score = 63.7 bits (154), Expect = 6e-11 Identities = 36/305 (11%), Positives = 81/305 (26%), Gaps = 56/305 (18%) Query: 15 EVYCG--TGTFARNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVE----SGGSSVG 67 +VY G + ++RI G + K +A+ F + + + + ++V Sbjct: 7 DVYDGGYGSKHSPVQLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVT 66 Query: 68 LKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVS 127 + G +D+ + + + KHG+S+ D +L+ + Sbjct: 67 INYLKDG----IVDVGITYSPVAERIS---IKHGISESPSYYAFRDHFMLIGPPSNPAKL 119 Query: 128 LTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVL 187 D+ F+ + +E P VR Sbjct: 120 SGDSDIADM------------FSKMHDAAEAGNTKPPVRFLSRYDK-------------- 153 Query: 188 QEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGF 247 S + + + + L + ++ Sbjct: 154 ----------SATNIKEAELWLSIGQVPWATAYSTWYHQYITFPIQALTAAILLREYTIT 203 Query: 248 VGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSF 307 ++ D +V P+ P V + N+ + +E+ + Sbjct: 204 DYGTYLSIPRG-----LRDQMVIYKKGTNDADDPLLNPAHLLVGARAKNAEMA-KEFAKW 257 Query: 308 SVSDE 312 VS E Sbjct: 258 LVSKE 262 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 46.9 bits (111), Expect = 7e-06 Identities = 67/395 (16%), Positives = 113/395 (28%), Gaps = 172/395 (43%) Query: 13 VLEVYCGTGTFARNRIRIAGSSTLF-----PYSKIIA-----ENFSEYFPE----FKT-- 56 +++ Y A+ +S LF ++++A N +YF E ++T Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181 Query: 57 PFVESGGSSVG--LKEFCRGIGDDT--------IDIVN-----SSR-------------- 87 V L E R ++I+ S+ Sbjct: 182 VLVGDLIKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239 Query: 88 ----------KITQNELDECKKHGVS--DIQE----VTIGHD-GILLVSDRDMVSVSLTV 130 +T K G + +++ T GH G++ ++ + + Sbjct: 240 LIGVIQLAHYVVT------AKLLGFTPGELRSYLKGAT-GHSQGLVTAV---AIAETDSW 289 Query: 131 EDLYKALASYLIVDDKVVFNPLKKW--SEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQ 188 E + ++ + V+F + +P + PS +L+ Sbjct: 290 ESFFVSVRKAI----TVLF-----FIGVRCYEAYPNTSLP---PS------------ILE 325 Query: 189 ------EGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIE-VDGDYTETLARIEVN 241 EG S M LS++ + E V +T + + Sbjct: 326 DSLENNEGVP-----SPM----------LSIS-------NLTQEQVQDYVNKTNSHLPAG 363 Query: 242 KDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGL 301 K V + L N A L +VSG P S L N L L Sbjct: 364 KQV--EISLV---NGAKNL--------------VVSGP-PQS--L------YGLN--LTL 393 Query: 302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSV 336 R + AP S L Q IP S ERK Sbjct: 394 R---------KAKAP-SGLDQ-SRIPFS--ERKLK 415 Score = 45.3 bits (107), Expect = 2e-05 Identities = 57/307 (18%), Positives = 101/307 (32%), Gaps = 112/307 (36%) Query: 105 IQEVTIGHDGILLVSDRDMVSVSLT-VEDLY------KALASYLIVDDKVVFNPLKKWSE 157 V G ++++ LT E+ Y ALA+ L+ ++ K+ Sbjct: 69 SSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-- 122 Query: 158 IRPDFPEVRIAIYVPSGKHGT----REVLEKKV-L------Q---EGCVRSRNFSKMRDM 203 I+ ++ RI P K R V E L Q + F ++RD+ Sbjct: 123 IK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-----FEELRDL 176 Query: 204 FK-YN--VQQLSVACTSVRQDGIAIEVDGDYTETLARIEVN-KDVFGFVGLSFYKNNADV 259 ++ Y+ V L I+ + L R ++ + VF GL ++ Sbjct: 177 YQTYHVLVGDL-------------IKFSAETLSELIRTTLDAEKVFTQ-GL-------NI 215 Query: 260 LKLVPIDGIVPSMGTIVSGLYPISRPLL-------FYV--KRQHFNSVLG-----LREYV 305 L+ + P ++S PIS PL+ + V K +LG LR Y+ Sbjct: 216 LEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAK------LLGFTPGELRSYL 267 Query: 306 S--------------FSVSDEMMAPDS----------QLFQYGL-----IPISNEERKSV 336 + +D + +S LF G+ P ++ + Sbjct: 268 KGATGHSQGLVTAVAIAETD---SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324 Query: 337 RDSIAVG 343 DS+ Sbjct: 325 EDSLENN 331 Score = 32.2 bits (73), Expect = 0.16 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 47/144 (32%) Query: 3 FFFVVLMCFVVLEVYCGTGTFARNRI-RIAGSSTLFPYSKIIA---ENFSEYFPEFKTPF 58 FF V VL + G R +++L P I+ EN +E P +P Sbjct: 292 FFVSVRKAITVL-FFIGV------RCYEAYPNTSLPP--SILEDSLEN-NEGVP---SPM 338 Query: 59 VESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLV 118 + S+ + +++ Q+ +++ H + ++V I LV Sbjct: 339 L-----SI------SNL----------TQEQVQDYVNKTNSHLPAG-KQVEIS-----LV 371 Query: 119 -SDRDMVSVSLTVEDLYKALASYL 141 +++V VS + LY L L Sbjct: 372 NGAKNLV-VSGPPQSLY-GLNLTL 393 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 Score = 30.1 bits (66), Expect = 0.69 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEF 71 ++++V CG GT + P+ +II + S + E + F Sbjct: 39 LLVDVGCGPGTATLQMAQELK-----PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93 Query: 72 CRGIGDD 78 DD Sbjct: 94 KISSSDD 100 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Length = 225 Score = 29.1 bits (64), Expect = 1.6 Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 6/38 (15%) Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSE 49 V +++ G G ++A + I + + Sbjct: 27 VHIDLGTGDGRNI---YKLAI---NDQNTFYIGIDPVK 58 >1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Length = 314 Score = 28.7 bits (63), Expect = 1.8 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%) Query: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG---SSTLFPYSKIIAENFSEYFPEFKTP 57 MR + + A+ I I + FP + IA+ ++ + Sbjct: 1 MRKPILAALTL-------AGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRAN 53 Query: 58 FVESGGSSVGLKEFCRGIGD 77 +GGS + G + Sbjct: 54 ARSTGGSVANINAINAGEFE 73 >3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} SCOP: c.124.1.8 Length = 266 Score = 28.4 bits (63), Expect = 2.5 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 74 GIGD-DTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSLTVE 131 GIG D N E D+ DI G ++ ++ ++S+ + Sbjct: 162 GIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMN 221 Query: 132 DLYKA 136 L +A Sbjct: 222 KLKQA 226 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Length = 263 Score = 28.1 bits (61), Expect = 2.8 Identities = 10/40 (25%), Positives = 13/40 (32%) Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYF 51 V LE+ GTG A I + E F + Sbjct: 42 VFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI 81 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 Score = 28.0 bits (61), Expect = 3.4 Identities = 15/172 (8%), Positives = 45/172 (26%), Gaps = 16/172 (9%) Query: 13 VLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC 72 VL++ C G + IA + S+++ + + S L+ Sbjct: 50 VLDLGCNVGHLT---LSIACK---WGPSRMVGLDIDSRLIHSARQNIRHYLSE-ELRLPP 102 Query: 73 RGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVED 132 + + D + +T I + + + Sbjct: 103 QTLEGDPGAEGEE--------GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPN 154 Query: 133 LYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEK 184 + ++D + ++ + +++ G G + + + Sbjct: 155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRR 205 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Length = 185 Score = 27.3 bits (60), Expect = 5.1 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 8/52 (15%) Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGG 63 +V++ G G +AG K+ A + E + + G Sbjct: 25 IVVDATMGNGNDT---AFLAG-----LSKKVYAFDVQEQALGKTSQRLSDLG 68 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Length = 230 Score = 27.1 bits (58), Expect = 5.5 Identities = 16/105 (15%), Positives = 33/105 (31%) Query: 13 VLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC 72 VL++ C +G + AE E +E+ ++F Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFD 95 Query: 73 RGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILL 117 I D ++ + + + K++GV + H +L Sbjct: 96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLA 140 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 Score = 27.0 bits (59), Expect = 7.0 Identities = 6/44 (13%), Positives = 9/44 (20%) Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFK 55 V ++V CGTG + Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Length = 315 Score = 26.5 bits (58), Expect = 8.9 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%) Query: 71 FCRGIGD-DTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSL 128 GIG D N E D+ DI +G L+ ++ ++S+ Sbjct: 208 ALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSI 267 Query: 129 TVEDLYKA 136 + L +A Sbjct: 268 EMAKLRQA 275 >2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* Length = 413 Score = 26.6 bits (58), Expect = 9.9 Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 232 TETLARIEVNKDVFGFVGLSFYKNNADVL 260 T+ L I N D F VGL+ + D L Sbjct: 26 TQALQVIADNPDRFEVVGLAAGGAHLDTL 54 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.139 0.402 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,017,893 Number of extensions: 144209 Number of successful extensions: 464 Number of sequences better than 10.0: 1 Number of HSP's gapped: 452 Number of HSP's successfully gapped: 22 Length of query: 346 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 253 Effective length of database: 3,438,538 Effective search space: 869950114 Effective search space used: 869950114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.5 bits)