BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] (346 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%) Query: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE Sbjct: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60 Query: 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD Sbjct: 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120 Query: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE Sbjct: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180 Query: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV Sbjct: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240 Query: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG Sbjct: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300 Query: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG 346 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG Sbjct: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG 346 >gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62] Length = 150 Score = 27.7 bits (60), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 80 IDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYK 135 ID ++ I QN+L E K+ V +G+ LVSDR M V +LY+ Sbjct: 36 IDYAGIAQNIYQNQLSERKEGKKEFYDAVNMGYQLAPLVSDRRMKCNVKPVANLYQ 91 >gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 26.2 bits (56), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 28/110 (25%) Query: 241 NKDVFGFVG-LSFYKNN--ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNS 297 N D++ G LSF + + A + + GI P + +I+ L H+N Sbjct: 10 NLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLI------------NHYNK 57 Query: 298 VLGLREYVSF-------------SVSDEMMAPDSQLFQYGLIPISNEERK 334 +L E + + +++++M QL YG PI N K Sbjct: 58 ILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107 >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 18/60 (30%) Query: 99 KHGVSDIQEVTIGHDGILLVSDRDM------------------VSVSLTVEDLYKALASY 140 +H V ++Q + + D +L+ +DRD+ V +L V+D+YK SY Sbjct: 193 QHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSY 252 >gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 23.5 bits (49), Expect = 6.0, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Query: 298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335 + LR +++FS ++ P ++F YG S +E+K+ Sbjct: 70 IFWLRSFLAFSKYSKLSFPSCRIFFYG----SRKEQKA 103 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,429 Number of Sequences: 1233 Number of extensions: 9585 Number of successful extensions: 30 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 8 length of query: 346 length of database: 328,796 effective HSP length: 75 effective length of query: 271 effective length of database: 236,321 effective search space: 64042991 effective search space used: 64042991 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)