Query gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 118 out of 525
Neff 5.6
Searched_HMMs 13730
Date Wed Jun 1 07:40:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780708.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54g_ f.23.2.1 (G:) Mitochon 23.2 17 0.0013 13.4 3.2 25 136-160 12-36 (84)
2 d2a5yb2 a.77.1.3 (B:1-108) Cel 12.4 16 0.0012 13.6 -0.6 17 11-27 62-78 (108)
3 d1p16a2 d.142.2.3 (A:1-245) mR 10.2 23 0.0017 12.7 -0.4 10 95-104 236-245 (245)
4 d1fftc_ f.25.1.1 (C:) Cytochro 4.0 92 0.0067 9.3 1.4 17 136-152 162-178 (185)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 96 0.007 9.2 3.5 23 48-70 8-30 (36)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 3.8 97 0.0071 9.1 11.8 96 60-155 356-458 (509)
7 d2dkla1 a.5.2.1 (A:8-79) Trinu 3.6 1.1E+02 0.0077 8.9 1.2 11 8-18 15-25 (72)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 3.5 1.1E+02 0.0079 8.9 1.4 11 22-32 13-23 (27)
9 d1dj8a_ a.57.1.1 (A:) Protein 3.3 1.2E+02 0.0084 8.7 1.4 11 102-112 21-31 (79)
10 d2cchb2 a.74.1.1 (B:309-432) C 3.3 1.2E+02 0.0085 8.7 1.4 46 91-138 31-77 (124)
No 1
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.18 E-value=17 Score=13.40 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9799999889999999999999999
Q gi|254780708|r 136 DSIGWRKLTLRWAFFFLFLSFCNEI 160 (204)
Q Consensus 136 ~~~~W~~Lt~~w~~fF~~la~lN~~ 160 (204)
..+-|+++|+.-++--+.++.+|-|
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899998898999999999999997
No 2
>d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=12.41 E-value=16 Score=13.63 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780708|r 11 VCFLLEFSPGIAFWLCN 27 (204)
Q Consensus 11 mK~lle~~Pli~FFi~y 27 (204)
.|+..|++|+|.||--|
T Consensus 62 RrqAs~L~PLI~fFe~~ 78 (108)
T d2a5yb2 62 RRQASELGPLIDFFNYN 78 (108)
T ss_dssp HHHCSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 98776551799999983
No 3
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}
Probab=10.21 E-value=23 Score=12.74 Aligned_cols=10 Identities=50% Similarity=0.943 Sum_probs=5.2
Q ss_pred CCCHHEEEHH
Q ss_conf 7004243155
Q gi|254780708|r 95 DESLIKMKPT 104 (204)
Q Consensus 95 d~~FIk~KpT 104 (204)
+...+||||+
T Consensus 236 ~~~~lKWKP~ 245 (245)
T d1p16a2 236 DQTLLKWKPA 245 (245)
T ss_dssp EEEEEEECCG
T ss_pred CCCEEEECCC
T ss_conf 8880895979
No 4
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=92 Score=9.26 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 97999998899999999
Q gi|254780708|r 136 DSIGWRKLTLRWAFFFL 152 (204)
Q Consensus 136 ~~~~W~~Lt~~w~~fF~ 152 (204)
..--|+-+..-|..-|.
T Consensus 162 ~~~YWHFvd~vWi~lf~ 178 (185)
T d1fftc_ 162 LSLFWHFLDVVWICVFT 178 (185)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.89 E-value=96 Score=9.16 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999998508
Q gi|254780708|r 48 FVSTLLFMVLTAVSLGMFWFFFR 70 (204)
Q Consensus 48 ~~AT~~li~at~i~~~~~~~~~k 70 (204)
++||+.++..-.+-+.+.|+.+.
T Consensus 8 ~iAt~LFilvPt~FLliLyvqT~ 30 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 99999999998999887512304
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=3.84 E-value=97 Score=9.13 Aligned_cols=96 Identities=7% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHHHHHHHCC-CCCH--HHHHHHHHHHHHHHHHHHHCCCCHHE--EEHH--HHHHHHHHHHHHHHHHCCCHHHHHHHCC
Q ss_conf 99999998508-7887--68999999999999886618700424--3155--9999999999999982881489987203
Q gi|254780708|r 60 VSLGMFWFFFR-EFRV--IPVVSGVCVLVFGSLTVWLRDESLIK--MKPT--FFYFVFSVVLFVGYLSGKSFVRFFLSQV 132 (204)
Q Consensus 60 i~~~~~~~~~k-ki~~--~~~is~~lv~vfGglTl~f~d~~FIk--~KpT--Ii~~~fA~~Ll~~~~~~k~llk~ll~~~ 132 (204)
+...++.+.++ +.++ ...++.+.+.+.+++....++..... +=.+ +.-..+...+.+++..|.+-+..-....
T Consensus 356 ~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~ 435 (509)
T d2a65a1 356 MQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRG 435 (509)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCCHHHHHHHEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHC
T ss_conf 33044898986498636035230678872524788735318889999999999999999986022375389999999847
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78997999998899999999999
Q gi|254780708|r 133 ICLDSIGWRKLTLRWAFFFLFLS 155 (204)
Q Consensus 133 ~~l~~~~W~~Lt~~w~~fF~~la 155 (204)
...+...|-+..+++..=.+...
T Consensus 436 ~~~~~~~~~~~~~~~i~Pi~l~~ 458 (509)
T d2a65a1 436 GIIKVPRIYYYVMRYITPAFLAV 458 (509)
T ss_dssp CSSCCCTHHHHHHHTHHHHHHHH
T ss_pred CCCCHHHHHHHHEEEEEHHHHHH
T ss_conf 89877899987403423853635
No 7
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.61 E-value=1.1e+02 Score=8.94 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 15899999999
Q gi|254780708|r 8 SKIVCFLLEFS 18 (204)
Q Consensus 8 ~~~mK~lle~~ 18 (204)
|++.||+.++|
T Consensus 15 np~~KQfsnMG 25 (72)
T d2dkla1 15 SRLIKQLTDMG 25 (72)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 58999876368
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.52 E-value=1.1e+02 Score=8.85 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999986011
Q gi|254780708|r 22 AFWLCNFYGEK 32 (204)
Q Consensus 22 ~FFi~y~~~~~ 32 (204)
+|+.+|+-+++
T Consensus 13 lf~aayqqykr 23 (27)
T d2e74g1 13 LFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHCC
T ss_conf 99999998548
No 9
>d1dj8a_ a.57.1.1 (A:) Protein HNS-dependent expression A; HdeA {Escherichia coli [TaxId: 562]}
Probab=3.35 E-value=1.2e+02 Score=8.70 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred EHHHHHHHHHH
Q ss_conf 15599999999
Q gi|254780708|r 102 KPTFFYFVFSV 112 (204)
Q Consensus 102 KpTIi~~~fA~ 112 (204)
|||.++|.-+.
T Consensus 21 kP~av~~Aeg~ 31 (79)
T d1dj8a_ 21 QPTAVGFAEAL 31 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred CCCEEHHHHHH
T ss_conf 75112188876
No 10
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.31 E-value=1.2e+02 Score=8.67 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHCC-CCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHH
Q ss_conf 66187-0042431559999999999999982881489987203789979
Q gi|254780708|r 91 VWLRD-ESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVICLDSI 138 (204)
Q Consensus 91 l~f~d-~~FIk~KpTIi~~~fA~~Ll~~~~~~k~llk~ll~~~~~l~~~ 138 (204)
+-+.| +.|++.+|+.+ +-|++.+.-...+++..-..+.+.-..+++
T Consensus 31 lsLl~~~~~l~~~PS~l--Aaaai~lar~~l~~~~W~~~L~~~t~y~~~ 77 (124)
T d2cchb2 31 LSLIDADPYLKYLPSVI--AGAAFHLALYTVTGQSWPESLIRKTGYTLE 77 (124)
T ss_dssp HHHHCHHHHTTSCHHHH--HHHHHHHHHHHHHSCCSCHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHCCCHH
T ss_conf 99981999974694899--999999999982789855899988099999
Done!