RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>2waq_H DNA-directed RNA polymerase RPO5 subunit; multi-subunit,
           transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_H
           2pmz_H 3hkz_H (H:)
          Length = 84

 Score = 25.4 bits (56), Expect = 5.8
 Identities = 4/22 (18%), Positives = 7/22 (31%)

Query: 183 LIFGIVQMNLINKHTILPEERK 204
                    L+ KH +L  +  
Sbjct: 7   RKIDPRIHYLVPKHEVLSIDEA 28


>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein
           structure initiative, structural genomics, PSI; NMR
           {Methanothermobacterthermautotrophicus} (A:)
          Length = 77

 Score = 25.4 bits (56), Expect = 6.1
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 183 LIFGIVQMNLINKHTILPEERK 204
           +   I++  L+ +H IL E   
Sbjct: 1   MKREILKHQLVPEHVILNESEA 22


>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin
           ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A (A:1-132)
          Length = 132

 Score = 25.2 bits (54), Expect = 6.6
 Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 7/54 (12%)

Query: 118 YLSGKSFVRFFLSQV------ICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNF 165
            L     V+     V      +   +  W     +        +      W+ F
Sbjct: 65  ELPATELVQA-CRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQF 117


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.338    0.149    0.499 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,623,453
Number of extensions: 70618
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 33
Length of query: 204
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 120
Effective length of database: 2,116,429
Effective search space: 253971480
Effective search space used: 253971480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 52 (24.1 bits)