RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.1 bits (65), Expect = 0.76
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 42/81 (51%)

Query: 162 WRNF-----STETWIFFKAIGI-----FP-IFLIFGIVQ------------M-------- 190
           W +F        T +FF  IG+     +P   L   I++            M        
Sbjct: 289 WESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346

Query: 191 -------NLINKHTILPEERK 204
                  N  N H  LP  ++
Sbjct: 347 EQVQDYVNKTNSH--LPAGKQ 365



 Score = 28.0 bits (62), Expect = 1.5
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 36/87 (41%)

Query: 10  IVCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNL----G---GIIFVSTLL--------F 54
           +   LL F+P          GE       + S L    G   G++  +  +        F
Sbjct: 251 VTAKLLGFTP----------GE-------LRSYLKGATGHSQGLV-TAVAIAETDSWESF 292

Query: 55  M--VLTAVSLGMFWFFFREFRVIPVVS 79
              V  A+++ +F+   R +   P  S
Sbjct: 293 FVSVRKAITV-LFFIGVRCYEAYPNTS 318


>2cmr_A GP41, transmembrane glycoprotein; immune system, immunoglobulin
           complex, neutralization, immunoglobulin, envelope
           protein, HIV; 2.0A {Human immunodeficiency virus 1} PDB:
           1f23_A 3cp1_A 3cyo_A 2z2t_A
          Length = 226

 Score = 26.3 bits (58), Expect = 4.9
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 155 SFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQM 190
              + IV +  +    I   A        ++GI Q+
Sbjct: 90  QLLSGIVQQQNNLLRAIE--AQQHLLQLTVWGIKQL 123


>3kv5_D JMJC domain-containing histone demethylation protein 1D;
           epigenetics, histone CODE, jumonji lysine demethylase,
           metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
           sapiens} PDB: 3kv6_A*
          Length = 488

 Score = 25.7 bits (56), Expect = 6.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 18  SPGIAFWLCNFYGEKLFFYFP 38
             G + W    +GEK+F+   
Sbjct: 285 FGGTSVWYHVLWGEKIFYLIK 305


>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, core fucose, SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score = 25.3 bits (55), Expect = 9.6
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 9/45 (20%)

Query: 114 LFVGYLSGKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCN 158
             + Y + ++ +         L+S  WR  T  W   F  +S   
Sbjct: 169 FMIAYGTQRTLI---------LESQNWRYATGGWETVFRPVSETC 204


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.338    0.149    0.499 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,834,542
Number of extensions: 81444
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 49
Length of query: 204
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 116
Effective length of database: 3,559,758
Effective search space: 412931928
Effective search space used: 412931928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 54 (25.0 bits)