HHsearch alignment for GI: 254780709 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=97.11 E-value=0.032 Score=35.87 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-HHHH----
Q ss_conf 999999999999--999999986---056778999999999999973889899999999999875127899-8999----
Q gi|254780709|r 15 RKLTKGFASTSL--KLKEGITDI---ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRV---- 84 (321)
Q Consensus 15 ~kLk~gL~kt~~--~L~~~l~~l---~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-~~~i---- 84 (321)
T Consensus 216 ~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evkek~~~El~kL~~m~~~SaE~~ViRnY 295 (782)
T COG0466 216 KKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNY 295 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999877888999999999999998588865455899999997516999899999999999985079999168899899
Q ss_pred --------------------------------HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf --------------------------------999999878520100121000136674123113544444247899999
Q gi|254780709|r 85 --------------------------------LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132 (321)
Q Consensus 85 --------------------------------~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA 132 (321)
T Consensus 296 lDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~----l~~~~kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 296 LDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQK----LTKKLKGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 999982887655421322999998744355671168999999999998----6146788579997899887011899999
Q ss_pred HHHHHCCCCEEEEEC----------CCC---CHHH-HHHHHHHHHHHC------CCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 998522674267743----------451---2456-889999975303------53212235866124542289999651
Q gi|254780709|r 133 KKMSDAGLKVMLAAG----------DTF---RSAA-IDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQAQAK 192 (321)
Q Consensus 133 ~~~~~~g~kV~lva~----------Dtf---R~aA-~eQL~~~a~~~~------v~~~~~~~~~dp~~v~~~a~~~a~~~ 192 (321)
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~ 451 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNN 451 (782)
T ss_pred HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCC
T ss_conf 99589779995476542777535531233568728999999867768747864033316777788688888626976567
Q ss_pred ---------C---CCEEEEECCCCCC-CHHHHHHHH
Q ss_conf ---------4---8759986543332-115778999
Q gi|254780709|r 193 ---------K---VDVLIIDTAGRLH-NNSILMAGI 215 (321)
Q Consensus 193 ---------~---~DvvliDTAGR~~-~~~~lm~EL 215 (321)
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM 487 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM 487 (782)
T ss_pred CHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCE
T ss_conf 612220167664432588860375132986784303