HHsearch alignment for GI: 254780709 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=97.11  E-value=0.032  Score=35.87  Aligned_cols=197  Identities=21%  Similarity=0.249  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHH--HHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-HHHH----
Q ss_conf             999999999999--999999986---056778999999999999973889899999999999875127899-8999----
Q gi|254780709|r   15 RKLTKGFASTSL--KLKEGITDI---ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRV----   84 (321)
Q Consensus        15 ~kLk~gL~kt~~--~L~~~l~~l---~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-~~~i----   84 (321)
T Consensus       216 ~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evkek~~~El~kL~~m~~~SaE~~ViRnY  295 (782)
T COG0466         216 KKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNY  295 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99999877888999999999999998588865455899999997516999899999999999985079999168899899


Q ss_pred             --------------------------------HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf             --------------------------------999999878520100121000136674123113544444247899999
Q gi|254780709|r   85 --------------------------------LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS  132 (321)
Q Consensus        85 --------------------------------~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA  132 (321)
T Consensus       296 lDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~----l~~~~kGpILcLVGPPGVGKTSLgkSIA  371 (782)
T COG0466         296 LDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQK----LTKKLKGPILCLVGPPGVGKTSLGKSIA  371 (782)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             999982887655421322999998744355671168999999999998----6146788579997899887011899999


Q ss_pred             HHHHHCCCCEEEEEC----------CCC---CHHH-HHHHHHHHHHHC------CCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             998522674267743----------451---2456-889999975303------53212235866124542289999651
Q gi|254780709|r  133 KKMSDAGLKVMLAAG----------DTF---RSAA-IDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQAQAK  192 (321)
Q Consensus       133 ~~~~~~g~kV~lva~----------Dtf---R~aA-~eQL~~~a~~~~------v~~~~~~~~~dp~~v~~~a~~~a~~~  192 (321)
T Consensus       372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~  451 (782)
T COG0466         372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNN  451 (782)
T ss_pred             HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCC
T ss_conf             99589779995476542777535531233568728999999867768747864033316777788688888626976567


Q ss_pred             ---------C---CCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             ---------4---8759986543332-115778999
Q gi|254780709|r  193 ---------K---VDVLIIDTAGRLH-NNSILMAGI  215 (321)
Q Consensus       193 ---------~---~DvvliDTAGR~~-~~~~lm~EL  215 (321)
T Consensus       452 ~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM  487 (782)
T COG0466         452 TFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM  487 (782)
T ss_pred             CHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCE
T ss_conf             612220167664432588860375132986784303