HHsearch alignment for GI: 254780709 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=97.89 E-value=0.00017 Score=51.91 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-------C---CCCCCCC------
Q ss_conf 41231135444442478999999985226742677434512456889999975303-------5---3212235------
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------A---DFVCSEI------ 174 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~-------v---~~~~~~~------ 174 (321)
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~ 102 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIV 102 (260)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 97899993899868999999999776269858999920698999999988099778975444068763121112542010
Q ss_pred ---CCCCHHHHHHHHHHHH-HHCCCEEEEECCC--CCCCHHHHH--HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf ---8661245422899996-5148759986543--332115778--9999899876302223430112310233522577
Q gi|254780709|r 175 ---GSDAAALAYEAFKQAQ-AKKVDVLIIDTAG--RLHNNSILM--AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246 (321)
Q Consensus 175 ---~~dp~~v~~~a~~~a~-~~~~DvvliDTAG--R~~~~~~lm--~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~ 246 (321)
T Consensus 103 ~~~~~~~~~l~-~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~----~~~t~~~~~~~~~~~~~~ 177 (260)
T COG0467 103 VGDPLDLEELL-DRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKK----LGVTSLLTTEAPVEERGE 177 (260)
T ss_pred CCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHH----CCEEEEEEECCCCCCCCC
T ss_conf 46652289999-9999999862898899966307766527825789999999987650----684899997443346665
Q ss_pred H-HHHHHHHHCCCCEEEEECCC
Q ss_conf 8-99987643589769996545
Q gi|254780709|r 247 R-QVEMFHAVAGTTGLIMTKMD 267 (321)
Q Consensus 247 ~-~a~~F~~~~~~~g~I~TKlD 267 (321)
T Consensus 178 ~~~~~----~-~vdgvI~l~~~ 194 (260)
T COG0467 178 SGVEE----Y-IVDGVIRLDLK 194 (260)
T ss_pred CCCEE----E-EEEEEEEEEEE
T ss_conf 66142----1-68999999777