HHsearch alignment for GI: 254780709 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.43 E-value=0.022 Score=37.07 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=86.7
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 412311354444424789999999852267426774-3451245688999997530353212235866124542289999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva-~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--~d~l~v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--LDNLLVSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH--HCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 35899846887654668999988865379808999589998999999988754--2153686689779999999999875
Q ss_pred HHHCCCEEEEECCCCCCCH------------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6514875998654333211------------5778999989987630222343011231023352257789998764358
Q gi|254780709|r 190 QAKKVDVLIIDTAGRLHNN------------SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257 (321)
Q Consensus 190 ~~~~~DvvliDTAGR~~~~------------~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~ 257 (321)
T Consensus 138 ~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~------~~vi~--------~NQv~---~k~~ 200 (279)
T COG0468 138 GAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYN------TAVIF--------TNQVR---AKIG 200 (279)
T ss_pred CCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC------CEEEE--------ECCEE---EECC
T ss_conf 4688788998257434636554853489999999999999999999749------58999--------78403---4067
Q ss_pred CCEEEEECCC-CCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 9769996545-78706999999999769889997
Q gi|254780709|r 258 TTGLIMTKMD-GTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 258 ~~g~I~TKlD-~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
T Consensus 201 ~~---f~--~~~~~~GG~~L~~~as~rl~l~k~~ 229 (279)
T COG0468 201 VM---FG--DPETTTGGNALKFYASVRLDLRRIE 229 (279)
T ss_pred CC---CC--CCCCCCCCHHHHHHHHEEEEEEECC
T ss_conf 66---68--8665877238875532477765224