HHsearch alignment for GI: 254780709 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=97.18 E-value=0.0035 Score=42.61 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=68.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCC---------------------CCEEEEECCCCCHH--HHHHHHHHHHHH
Q ss_conf 6741231135444442478999999985226---------------------74267743451245--688999997530
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG---------------------LKVMLAAGDTFRSA--AIDQLKIWADRT 165 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g---------------------~kV~lva~DtfR~a--A~eQL~~~a~~~ 165 (321)
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 88761003799999789999999999658664334552002244432025688659977321333300699999999860
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 35321223586612454228999965148759986543332115778999989987630222343011231023352257
Q gi|254780709|r 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245 (321)
Q Consensus 166 ~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~ 245 (321)
T Consensus 102 ~~~~~--------------------~~~~kviiidead~mt~~A~--nallk-------~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 102 SESPL--------------------EGGYKVVIIDEADKLTEDAA--NALLK-------TLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCCCC--------------------CCCCEEEEEECCCCCCHHHH--HHHHH-------HCCCCCCCEEEEEEECCHHHC
T ss_conf 44656--------------------67726999732032698888--76754-------332488871699974985556
Q ss_pred HHHHHH
Q ss_conf 789998
Q gi|254780709|r 246 LRQVEM 251 (321)
Q Consensus 246 ~~~a~~ 251 (321)
T Consensus 153 l~tI~S 158 (325)
T COG0470 153 LPTIRS 158 (325)
T ss_pred HHHHHH
T ss_conf 478775