HHsearch alignment for GI: 254780709 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=645.30 Aligned_cols=290 Identities=35% Similarity=0.553 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHH
Q ss_conf 999999999999986056778999----999999999973889899999999999875127899-----89999999998
Q gi|254780709|r 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSEL 91 (321)
Q Consensus 21 L~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~-----~~~i~~~l~~~ 91 (321)
T Consensus 2 ~e~L~~~l~~~~~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eE 81 (451)
T COG0541 2 FESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEE 81 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47899999999998637786779999999999999999644468999999999999861466788899899999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78520100121000136674123113544444247899999998522674267743451245688999997530353212
Q gi|254780709|r 92 IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 92 L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~ 171 (321)
T Consensus 82 Lv~llG~~~~~l~l~-~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 82 LVKLLGGENSELNLA-KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHCCCCCCCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEC
T ss_conf 999848887665037-8998589998156797486899999999974994589850567868999999999860985316
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 23586612454228999965148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~------P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN------PDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHH
T ss_conf 7788997999999999999749988999688733030999999999985539------8748998764445678999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 764358976999654578706999999999769889997589813255577899999872865646
Q gi|254780709|r 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 252 F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~ 317 (321)
T Consensus 235 F~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~ 300 (451)
T COG0541 235 FNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVL 300 (451)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 866269864999714678762288856998789859974588735477749588999853732099