HHsearch alignment for GI: 254780709 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.36 E-value=0.0071 Score=40.51 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf 98999999999878520100121000136674-12311354444424789999999852267426774345124568899
Q gi|254780709|r 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158 (321)
Q Consensus 80 ~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL 158 (321)
T Consensus 495 GQd~AV~~v~~aIrraRaG------L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DM-----SEy~ 561 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAG------LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDM-----SEYM 561 (786)
T ss_pred CHHHHHHHHHHHHHHHHCC------CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCEEECH-----HHHH
T ss_conf 7399999999999998569------99999873578866788656999999999996599--744455456-----8777
Q ss_pred H--HHHHHHCCCC-CCCC-CCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCCC---
Q ss_conf 9--9975303532-1223-58661245422899996-5148759986543332115778999989987630--2223---
Q gi|254780709|r 159 K--IWADRTSADF-VCSE-IGSDAAALAYEAFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPH--- 228 (321)
Q Consensus 159 ~--~~a~~~~v~~-~~~~-~~~dp~~v~~~a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~--~~~~--- 228 (321)
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~--------LTEaVRr~PySViLlDEIEKAHpdV~-----nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQ--------LTEAVRRKPYSVILLDEIEKAHPDVF-----NLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHHHHCCCCCCCEECCCCC--------HHHHHHCCCCEEEEECHHHHCCHHHH-----HHHHHHHCCCCEECCCCC
T ss_conf 78779987279998720065540--------03766069986888412644088999-----999998467805548998
Q ss_pred --CCCEEEEECCCCCCHHHHHH
Q ss_conf --43011231023352257789
Q gi|254780709|r 229 --APHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 229 --~p~~~~lVlda~~gq~~~~~ 248 (321)
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred EEECCEEEEEEECCCCHHHHHH
T ss_conf 8843002899845026598975