HHsearch alignment for GI: 254780709 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=95.37 E-value=0.053 Score=34.37 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHHCCC----CCCCC-CCCCCHHHHH-
Q ss_conf 412311354444424789999999852267426774345124568899-9997530353----21223-5866124542-
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSAD----FVCSE-IGSDAAALAY- 183 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL-~~~a~~~~v~----~~~~~-~~~dp~~v~~- 183 (321)
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv---~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~va 128 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLV---PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVA 128 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEE---CCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf 7867999679998899999999982698---89997---82999999999999734886766033687233577748999
Q ss_pred --HH------HHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf --28------999965148759986543332115
Q gi|254780709|r 184 --EA------FKQAQAKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 184 --~a------~~~a~~~~~DvvliDTAGR~~~~~ 209 (321)
T Consensus 129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred EEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 8389764155554035666759997524578477