HHsearch alignment for GI: 254780709 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=95.37  E-value=0.053  Score=34.37  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHHCCC----CCCCC-CCCCCHHHHH-
Q ss_conf             412311354444424789999999852267426774345124568899-9997530353----21223-5866124542-
Q gi|254780709|r  111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSAD----FVCSE-IGSDAAALAY-  183 (321)
Q Consensus       111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL-~~~a~~~~v~----~~~~~-~~~dp~~v~~-  183 (321)
T Consensus        55 ~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv---~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~va  128 (442)
T COG1061          55 ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLV---PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVA  128 (442)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEE---CCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf             7867999679998899999999982698---89997---82999999999999734886766033687233577748999


Q ss_pred             --HH------HHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             --28------999965148759986543332115
Q gi|254780709|r  184 --EA------FKQAQAKKVDVLIIDTAGRLHNNS  209 (321)
Q Consensus       184 --~a------~~~a~~~~~DvvliDTAGR~~~~~  209 (321)
T Consensus       129 t~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~  162 (442)
T COG1061         129 TVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS  162 (442)
T ss_pred             EEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             8389764155554035666759997524578477