HHsearch alignment for GI: 254780709 and conserved domain: COG1084

Probab=95.56  E-value=0.24  Score=29.73  Aligned_cols=240  Identities=18%  Similarity=0.217  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHCC---CCCHHHHHH
Q ss_conf             999999999999999860567-7899--99999999999738------89899999999999875127---899899999
Q gi|254780709|r   19 KGFASTSLKLKEGITDIISSR-RLDD--GVREELEDLLIRSD------IGVAVAQKIVEELLTKRYAK---DVSVQRVLY   86 (321)
Q Consensus        19 ~gL~kt~~~L~~~l~~l~~~~-~lde--~~leeLee~LL~AD------Vg~~va~~Iie~ik~~~~~~---~i~~~~i~~   86 (321)
T Consensus        49 ~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~  128 (346)
T COG1084          49 RRVKTASNIVRDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQ  128 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999999999999984888432685899999999478999999999779999999999999998742798668999


Q ss_pred             HHHHHH---HHHCCCCCCCCC-----------CC-CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             999987---852010012100-----------01-366741231135444442478999999985226742677434512
Q gi|254780709|r   87 DVSELI---HKMLMPLSKPFN-----------WD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR  151 (321)
Q Consensus        87 ~l~~~L---~~~L~~~~~~~~-----------~~-~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR  151 (321)
T Consensus       129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT------~AkpEvA------  196 (346)
T COG1084         129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLT------TAKPEVA------  196 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH------CCCCCCC------
T ss_conf             9999987899999986278999999999985088779999738985699875899998875------4897667------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             45688999997530353212235866124542289999651487599865433321157789999899876302223430
Q gi|254780709|r  152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH  231 (321)
Q Consensus       152 ~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~  231 (321)
T Consensus       197 --------------~YPFT-----TK~i~-----vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~--AL-~hl~~  249 (346)
T COG1084         197 --------------PYPFT-----TKGIH-----VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL--AL-RHLAG  249 (346)
T ss_pred             --------------CCCCC-----CCCEE-----EEEEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHH--HH-HHHCC
T ss_conf             --------------88853-----36546-----765504870589842886457885773689999999--99-97428


Q ss_pred             EEEEECCC--CCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCH---HHHHHHHHHHCC-CEEEEECCCCCCC
Q ss_conf             11231023--352257789998764358----976999654578706---999999999769-8899975898132
Q gi|254780709|r  232 SVLQVLDA--TTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG---GGLIPIVVTHKI-PVYFLGVGEGIND  297 (321)
Q Consensus       232 ~~~lVlda--~~gq~~~~~a~~F~~~~~----~~g~I~TKlD~ta~~---G~~ls~~~~~~~-Pi~fig~Ge~i~D  297 (321)
T Consensus       250 ~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  325 (346)
T COG1084         250 VILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD  325 (346)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
T ss_conf             5899976850028999999999999998538876999741012466678999999876326554313543000178