HHsearch alignment for GI: 254780709 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=97.69 E-value=0.00019 Score=51.50 Aligned_cols=177 Identities=17% Similarity=0.239 Sum_probs=96.5
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 231135444442478999999985226742-677434512456889999975303-532122358661245422899996
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV-~lva~DtfR~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 99 SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~ 178 (1187)
T COG1110 99 SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE 178 (1187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 44898278876547999999998755874999966789999999999998865378524665312366577999999986
Q ss_pred HH----------------------CCCEEEEECC------CCCCCHHHHH------------HHHHHHHHHHH-------
Q ss_conf 51----------------------4875998654------3332115778------------99998998763-------
Q gi|254780709|r 191 AK----------------------KVDVLIIDTA------GRLHNNSILM------------AGIGKMIRVLK------- 223 (321)
Q Consensus 191 ~~----------------------~~DvvliDTA------GR~~~~~~lm------------~EL~ki~~v~~------- 223 (321)
T Consensus 179 ~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskN-vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~ 257 (1187)
T COG1110 179 SGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKN-VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAER 257 (1187)
T ss_pred CCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCC-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5996399974787886699840457778998047889863444-888999808887888888999999998632236778
Q ss_pred ------C----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC---------EEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf ------0----22234301123102335225778999876435897---------6999654578706999999999769
Q gi|254780709|r 224 ------R----LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT---------GLIMTKMDGTARGGGLIPIVVTHKI 284 (321)
Q Consensus 224 ------~----~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~---------g~I~TKlD~ta~~G~~ls~~~~~~~ 284 (321)
T Consensus 258 ~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~-~~~~~e~~~elvk~lG~ 336 (1187)
T COG1110 258 VREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYV-ESESLEKVVELVKKLGD 336 (1187)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEEC-CCCCHHHHHHHHHHHCC
T ss_conf 99999988888877504773699960557877743889999839856764031300044203-68637889999998489
Q ss_pred C-EEEEEC
Q ss_conf 8-899975
Q gi|254780709|r 285 P-VYFLGV 291 (321)
Q Consensus 285 P-i~fig~ 291 (321)
T Consensus 337 GgLIfV~~ 344 (1187)
T COG1110 337 GGLIFVPI 344 (1187)
T ss_pred CEEEEEEC
T ss_conf 74999971