HHsearch alignment for GI: 254780709 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=96.52 E-value=0.073 Score=33.38 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=91.9
Q ss_pred EECCCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCH----------
Q ss_conf 31135444442478999999-9852267426774345124568899999753035321---223586612----------
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAA---------- 179 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~-~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~---~~~~~~dp~---------- 179 (321)
T Consensus 32 tLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPT--KPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~k 109 (542)
T COG1111 32 TLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPT--KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKK 109 (542)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHHHCC
T ss_conf 389952875079999999999987458848996589--517999999999985898433231117778688999875177
Q ss_pred ------HHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf ------45422899996--5148759986543332115778999989987630222343011231023352257789998
Q gi|254780709|r 180 ------ALAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 180 ------~v~~~a~~~a~--~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
T Consensus 110 VfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv-------~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 110 VFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYV-------FVAKEYLRSAKNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred EEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHH-------HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 89956387776876176676780589862355413760699-------99999998256843798723899987999999
Q ss_pred HHHHCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 764358976999-654578706999999999769889997
Q gi|254780709|r 252 FHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLG 290 (321)
Q Consensus 252 F~~~~~~~g~I~-TKlD~ta~~G~~ls~~~~~~~Pi~fig 290 (321)
T Consensus 183 -~~nLgIe~vevrTE~d~DV~-------~Yv~~~kve~ik 214 (542)
T COG1111 183 -VENLGIEKVEVRTEEDPDVR-------PYVKKIKVEWIK 214 (542)
T ss_pred -HHHCCCCEEEEECCCCCCHH-------HHHCCCEEEEEE
T ss_conf -98379542898457885177-------751404248996