HHsearch alignment for GI: 254780709 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.28 E-value=0.012 Score=38.83 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH-----HH
Q ss_conf 9999999998751278998999999999878520100121000136674123113544444247899999998-----52
Q gi|254780709|r 63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-----SD 137 (321)
Q Consensus 63 a~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~-----~~ 137 (321)
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~--~~--lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLE--EE--LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC--HH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 799999987674071777889999999899997547--87--76225755358888888768899999999848983788
Q ss_pred C--CC-CEEEEECC
Q ss_conf 2--67-42677434
Q gi|254780709|r 138 A--GL-KVMLAAGD 148 (321)
Q Consensus 138 ~--g~-kV~lva~D 148 (321)
T Consensus 82 EATKfTEVGYVGrD 95 (444)
T COG1220 82 EATKFTEVGYVGRD 95 (444)
T ss_pred EEEEEEECCCCCCC
T ss_conf 76421340325645