HHsearch alignment for GI: 254780709 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.28  E-value=0.012  Score=38.83  Aligned_cols=82  Identities=24%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH-----HH
Q ss_conf             9999999998751278998999999999878520100121000136674123113544444247899999998-----52
Q gi|254780709|r   63 AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-----SD  137 (321)
Q Consensus        63 a~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~-----~~  137 (321)
T Consensus         6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~--~~--lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220           6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLE--EE--LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC--HH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             799999987674071777889999999899997547--87--76225755358888888768899999999848983788


Q ss_pred             C--CC-CEEEEECC
Q ss_conf             2--67-42677434
Q gi|254780709|r  138 A--GL-KVMLAAGD  148 (321)
Q Consensus       138 ~--g~-kV~lva~D  148 (321)
T Consensus        82 EATKfTEVGYVGrD   95 (444)
T COG1220          82 EATKFTEVGYVGRD   95 (444)
T ss_pred             EEEEEEECCCCCCC
T ss_conf             76421340325645