HHsearch alignment for GI: 254780709 and conserved domain: COG1474

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=95.37  E-value=0.13  Score=31.66  Aligned_cols=94  Identities=17%  Similarity=0.301  Sum_probs=53.6

Q ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC-C-EEEEECCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             67412311354444424789999999852267-4-26774345124--56889999975303532122358661245422
Q gi|254780709|r  109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-K-VMLAAGDTFRS--AAIDQLKIWADRTSADFVCSEIGSDAAALAYE  184 (321)
Q Consensus       109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~-k-V~lva~DtfR~--aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~  184 (321)
T Consensus        40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~--i~~~~~~~p~~-----g~~~~~~~~  112 (366)
T COG1474          40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK--ILNKLGKVPLT-----GDSSLEILK  112 (366)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHH--HHHHHCCCCCC-----CCCHHHHHH
T ss_conf             99860799889998732899999999973315675799951307878799999--99982689976-----763268999


Q ss_pred             HHHHHH--HHCCCEEEEECCCCCCCHH
Q ss_conf             899996--5148759986543332115
Q gi|254780709|r  185 AFKQAQ--AKKVDVLIIDTAGRLHNNS  209 (321)
Q Consensus       185 a~~~a~--~~~~DvvliDTAGR~~~~~  209 (321)
T Consensus       113 ~l~~~~~~~~~~~IvvLDEid~L~~~~  139 (366)
T COG1474         113 RLYDNLSKKGKTVIVILDEVDALVDKD  139 (366)
T ss_pred             HHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf             999977741875999976476541546