HHsearch alignment for GI: 254780709 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=95.37 E-value=0.13 Score=31.66 Aligned_cols=94 Identities=17% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC-C-EEEEECCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 67412311354444424789999999852267-4-26774345124--56889999975303532122358661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-K-VMLAAGDTFRS--AAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~-k-V~lva~DtfR~--aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~ 184 (321)
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~--i~~~~~~~p~~-----g~~~~~~~~ 112 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK--ILNKLGKVPLT-----GDSSLEILK 112 (366)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHH--HHHHHCCCCCC-----CCCHHHHHH
T ss_conf 99860799889998732899999999973315675799951307878799999--99982689976-----763268999
Q ss_pred HHHHHH--HHCCCEEEEECCCCCCCHH
Q ss_conf 899996--5148759986543332115
Q gi|254780709|r 185 AFKQAQ--AKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 185 a~~~a~--~~~~DvvliDTAGR~~~~~ 209 (321)
T Consensus 113 ~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 113 RLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf 999977741875999976476541546