HHsearch alignment for GI: 254780709 and conserved domain: COG1663
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].
Probab=95.55 E-value=0.027 Score=36.41 Aligned_cols=84 Identities=27% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCEEECCC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC----------------HHHHHHHHHHHHHHCCCCCC
Q ss_conf 41231135---444442478999999985226742677434512----------------45688999997530353212
Q gi|254780709|r 111 PHVILVVG---VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR----------------SAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 111 p~vil~vG---~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR----------------~aA~eQL~~~a~~~~v~~~~ 171 (321)
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg~~~~~~~~~~~~~~a~~~GDEPl-LlA~~t~~pv~v 124 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGGKLKVVPLVDNIHTTAAEVGDEPL-LLARRTGAPVAV 124 (336)
T ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHH-HHHHHCCCCEEE
T ss_conf 8878998557777899688999999999866973679805768887654102567678677284688-875533996898
Q ss_pred CCCCCCCHHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf 23586612454228999965--14875998654
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQA--KKVDVLIIDTA 202 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~--~~~DvvliDTA 202 (321)
T Consensus 125 ~~~R-------~~~~~~l~~~~~~~diIi~DDG 150 (336)
T COG1663 125 SPDR-------KDAAKALLAAHLGCDIIVLDDG 150 (336)
T ss_pred EHHH-------HHHHHHHHHHCCCCCEEEECCC
T ss_conf 6429-------8999999851789899997674