HHsearch alignment for GI: 254780709 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.32 E-value=0.02 Score=37.32 Aligned_cols=176 Identities=17% Similarity=0.202 Sum_probs=95.8
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----------HCCCC--CCCCCCCCC
Q ss_conf 412311354444424789999999852267426774345124568899999753----------03532--122358661
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----------TSADF--VCSEIGSDA 178 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~----------~~v~~--~~~~~~~dp 178 (321)
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~ 107 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRS 107 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCCHHH
T ss_conf 76999988898548899999999887089548999840359999998886388716877506268999324542257377
Q ss_pred H-HHHHHHHHHHHHHCCCEEEEECCCCCCCHH------HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 2-454228999965148759986543332115------778999989987630222343011231023352257789998
Q gi|254780709|r 179 A-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNS------ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251 (321)
Q Consensus 179 ~-~v~~~a~~~a~~~~~DvvliDTAGR~~~~~------~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~ 251 (321)
T Consensus 108 ~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~--------gKvIilT----vhp~~l~e~~~ 175 (235)
T COG2874 108 ARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL--------GKVIILT----VHPSALDEDVL 175 (235)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHC--------CCEEEEE----ECHHHCCHHHH
T ss_conf 89999999755775237789995343776526499999999999998728--------9789999----47343378999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 76435897699965457870699999999976988999758981325557789
Q gi|254780709|r 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304 (321)
Q Consensus 252 F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~ 304 (321)
T Consensus 176 ~rirs~~d~~l~--L~~~~~Gg~~~~~~~----i~K~~ga~~s~~~~I~F~V~ 222 (235)
T COG2874 176 TRIRSACDVYLR--LRLEELGGDLIKVLE----IVKYRGARKSFQNIISFRVE 222 (235)
T ss_pred HHHHHHHHEEEE--EEHHHHCCEEEEEEE----EEEECCCHHHCCCCEEEEEC
T ss_conf 999875202589--870231784558778----76654713321774058855