HHsearch alignment for GI: 254780709 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=95.67 E-value=0.034 Score=35.70 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=55.7
Q ss_pred EECCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCHH------------HHHHHHHHHH--HHCCCCCCCCCCCCC
Q ss_conf 311354444-4247899999998522674267743451245------------6889999975--303532122358661
Q gi|254780709|r 114 ILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA------------AIDQLKIWAD--RTSADFVCSEIGSDA 178 (321)
Q Consensus 114 il~vG~nG~-GKTTT~aKLA~~~~~~g~kV~lva~DtfR~a------------A~eQL~~~a~--~~~v~~~~~~~~~dp 178 (321)
T Consensus 100 l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSS-- 177 (481)
T PRK00139 100 LKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTLIPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSS-- 177 (481)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECH--
T ss_conf 808999589984349999999998749863143022114187303667898876889999999998799779998430--
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEECCCCCCCHHH-HHHHHHH
Q ss_conf 24542289999651--487599865433321157-7899998
Q gi|254780709|r 179 AALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSI-LMAGIGK 217 (321)
Q Consensus 179 ~~v~~~a~~~a~~~--~~DvvliDTAGR~~~~~~-lm~EL~k 217 (321)
T Consensus 178 -----hgl~q~Rv~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~ 214 (481)
T PRK00139 178 -----HALDQGRVDGLTFDVAVFTNLTRDHLDYHGTMEDYFA 214 (481)
T ss_pred -----HHHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHH
T ss_conf -----3555221348875689996576778534378999999