HHsearch alignment for GI: 254780709 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=95.34 E-value=0.094 Score=32.60 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=59.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 123113544444247899999998522--674267743451245688999997530353212235866124542289999
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~--g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a 189 (321)
T Consensus 146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~---------------~--------~~~~F 202 (447)
T PRK00149 146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRN---------------N--------AMEEF 202 (447)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHC---------------C--------CHHHH
T ss_conf 855897799887889999999999985899728995499999999999851---------------8--------69999
Q ss_pred --HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --651487599865433321157789999899876
Q gi|254780709|r 190 --QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222 (321)
Q Consensus 190 --~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~ 222 (321)
T Consensus 203 r~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l 237 (447)
T PRK00149 203 KEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNAL 237 (447)
T ss_pred HHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99997288543214888605577999999999999