HHsearch alignment for GI: 254780709 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=96.43 E-value=0.029 Score=36.25 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=71.8
Q ss_pred EECCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCC--CCCCCCCCCHH-----HHH
Q ss_conf 311354444424789999999-852267426774345124568899999753--03532--12235866124-----542
Q gi|254780709|r 114 ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADR--TSADF--VCSEIGSDAAA-----LAY 183 (321)
Q Consensus 114 il~vG~nG~GKTTT~aKLA~~-~~~~g~kV~lva~DtfR~aA~eQL~~~a~~--~~v~~--~~~~~~~dp~~-----v~~ 183 (321)
T Consensus 42 lvvsaPTgsGKT-lvAElail~~l~~g~k~vYi~--P~kALa~EK~~~~~~~~~~gi~V~~~tGd~~~~~~~l~~~dIiV 118 (736)
T PRK02362 42 LLAAIPTASGKT-LLAELAMLKAIAEGGKALYIV--PLRALASEKFEEFSEFSELGLRVGISTGDYDRRDEYLGRNDIIV 118 (736)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHHHHCCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCEEE
T ss_conf 899799998589-999999999998399799985--87999999999999874579989998089887831436899999
Q ss_pred HHHHHHH---------HHCCCEEEEECCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 2899996---------5148759986543------332115778999989987630222343011231023352257789
Q gi|254780709|r 184 EAFKQAQ---------AKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 184 ~a~~~a~---------~~~~DvvliDTAG------R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~ 248 (321)
T Consensus 119 ~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~~RG~~lE~~ls---kl~~-------~~~~iqiIgLSATl~-N~~~l 187 (736)
T PRK02362 119 ATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSPNRGPTLEVTLA---KLRR-------LNPDMQVIALSATIG-NADEL 187 (736)
T ss_pred ECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCCCCHHHHHHHHH---HHHH-------CCCCCEEEEEECCCC-CHHHH
T ss_conf 997999999844816765089899817678668872499999999---9973-------387743898624558-99999
Q ss_pred HH
Q ss_conf 99
Q gi|254780709|r 249 VE 250 (321)
Q Consensus 249 a~ 250 (321)
T Consensus 188 a~ 189 (736)
T PRK02362 188 AA 189 (736)
T ss_pred HH
T ss_conf 99