HHsearch alignment for GI: 254780709 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=97.42 E-value=0.012 Score=38.93 Aligned_cols=144 Identities=23% Similarity=0.237 Sum_probs=71.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCEEECCCCCCCCHHHHHHH
Q ss_conf 73889899999999999875127-8998999999999878520100121000136---6741231135444442478999
Q gi|254780709|r 55 RSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130 (321)
Q Consensus 55 ~ADVg~~va~~Iie~ik~~~~~~-~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~---~~p~vil~vG~nG~GKTTT~aK 130 (321)
T Consensus 45 ~~gis~~~a~ki~~~a~~~~~~~~f~Ta~el~~~r~-~~~~i-sTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~q 122 (318)
T PRK04301 45 IAGISESTAAKIIEAAREALDIGGFETALEVLERRK-SIGKI-TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQ 122 (318)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCC-CCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 509999999999999998536579826999999863-47824-7888788805479833670788866887870356677
Q ss_pred HHHHHH---HC---CCCEEEEEC-CCCCHHHHHHHHHHHHHHCCC--------CCCCCCCCC-CHHHHHHHHHHHHH-HC
Q ss_conf 999985---22---674267743-451245688999997530353--------212235866-12454228999965-14
Q gi|254780709|r 131 LSKKMS---DA---GLKVMLAAG-DTFRSAAIDQLKIWADRTSAD--------FVCSEIGSD-AAALAYEAFKQAQA-KK 193 (321)
Q Consensus 131 LA~~~~---~~---g~kV~lva~-DtfR~aA~eQL~~~a~~~~v~--------~~~~~~~~d-p~~v~~~a~~~a~~-~~ 193 (321)
T Consensus 123 Lav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qi---a~~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~ 199 (318)
T PRK04301 123 LAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQM---AEGLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNN 199 (318)
T ss_pred HHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 67653376777898863799956898697999999---998499978986402686139989999999999999962788
Q ss_pred CCEEEEECCC
Q ss_conf 8759986543
Q gi|254780709|r 194 VDVLIIDTAG 203 (321)
Q Consensus 194 ~DvvliDTAG 203 (321)
T Consensus 200 v~LvVvDSi~ 209 (318)
T PRK04301 200 IKLVIVDSLT 209 (318)
T ss_pred CEEEEEECCH
T ss_conf 0499994342