HHsearch alignment for GI: 254780709 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=97.80 E-value=0.00025 Score=50.65 Aligned_cols=162 Identities=21% Similarity=0.299 Sum_probs=88.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99998785201001210001366741231135444442478999999985226742677434512456889999975303
Q gi|254780709|r 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 (321)
Q Consensus 87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~ 166 (321)
T Consensus 195 ~l~~~i~~ll~~~~~g~~l---~~G~~v~i~G~PN~GKSSL~N~L~------~~drAIVS-------------------- 245 (445)
T PRK05291 195 ELIAELEKLLASAKQGELL---REGLKVVIAGRPNVGKSSLLNALL------GEERAIVT-------------------- 245 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHHHHHH------CCCCEEEC--------------------
T ss_conf 9999999999998741786---359869988999876899999985------78746731--------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 5321223586612454228999-965148759986543-33211577899998998763022234301123102335225
Q gi|254780709|r 167 ADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244 (321)
Q Consensus 167 v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~ 244 (321)
T Consensus 246 -----~ipGT-----TRD~ie~~l~l~G~~v~l~DTAGiR~t~d--~IE-~~GI~ra~~~~~~--ADlil~v~D~s~~~~ 310 (445)
T PRK05291 246 -----DIAGT-----TRDVIEEHINLDGIPLRLIDTAGIRETED--EVE-KIGIERSRKAIEE--ADLVLLVLDASEPLT 310 (445)
T ss_pred -----CCCCC-----CCCEEEEEEEECCEEEEEEECCCCCCCCC--HHH-HHHHHHHHHHHHH--CCEEEEEEECCCCCC
T ss_conf -----89997-----40402236899998999998997665574--588-9999999999983--999999987998887
Q ss_pred HHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE--CCCCCCCCCCCC
Q ss_conf 778999876435--8976999654578706999999999769889997--589813255577
Q gi|254780709|r 245 ALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG--VGEGINDLEPFV 302 (321)
Q Consensus 245 ~~~~a~~F~~~~--~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig--~Ge~i~Dl~~f~ 302 (321)
T Consensus 311 ~~~~~-~~-~~~~~~~~i~V~NK~DL~~~--------~~~~~~~i~iSak~g~Gi~~L~~~i 362 (445)
T PRK05291 311 EEDKE-IL-EEFKNKPVIVVLNKADLTGE--------KIDGLPVIRISAKTGEGIDELEEAL 362 (445)
T ss_pred CCHHH-HH-HHCCCCCEEEEEEHHHCCCC--------CCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 22599-99-85179987999851204665--------3478975999837886999999999