HHsearch alignment for GI: 254780709 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00 E-value=0 Score=420.97 Aligned_cols=286 Identities=26% Similarity=0.363 Sum_probs=236.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 14899999999999999999999860567-78999999999999973889899999999999875127899899999999
Q gi|254780709|r 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 (321)
Q Consensus 11 m~~f~kLk~gL~kt~~~L~~~l~~l~~~~-~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~ 89 (321)
T Consensus 118 ~~~~~~l~~El~~lr~~l~~~~~~~~~~~~~~~~p~~~~l~~~L~~~Gvs~~la~~l~~~~~~-----~~~~~~~~~~l~ 192 (412)
T PRK05703 118 EKELKDMRKELAELKELLEHQLSMLAWEKLERIPPEFAKLYKRLKESGLSPEIADKLLKLLLE-----DMNPREAWRYLL 192 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_conf 378999999999999999999864101222348878999999999869999999999998664-----289799999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCC-CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98785201001210001366741231135444442478999999985-2267-426774345124568899999753035
Q gi|254780709|r 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 90 ~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
T Consensus 193 ~~L~~~l~~~~~----~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgv 268 (412)
T PRK05703 193 ELLANMLPTRVE----DILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGI 268 (412)
T ss_pred HHHHHHCCCCCC----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 999975788876----6545673699988888756769999999999972998179998376777799999999997197
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-HHHH
Q ss_conf 321223586612454228999965148759986543332115778999989987630222343011231023352-2577
Q gi|254780709|r 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-QNAL 246 (321)
Q Consensus 168 ~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g-q~~~ 246 (321)
T Consensus 269 p~~v~~~---~~~-l~~al~~--~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~------~~~~~LVlsat~~~~dl~ 336 (412)
T PRK05703 269 PVKVAYD---PKE-LAKALEQ--LANCDLILIDTAGRSQRDPRLISELKALIENSK------PIDVYLVLSATTKYRDLK 336 (412)
T ss_pred EEEEECC---HHH-HHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCCCHHHHH
T ss_conf 3798479---999-9999987--158997999689889789999999999986248------871899975989989999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 8999876435897699965457870699999999976988999758981-32555778999998728656463
Q gi|254780709|r 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318 (321)
Q Consensus 247 ~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~~~ 318 (321)
T Consensus 337 ~i~~~f~~-~~~~~lI~TKlDEt~~~G~il~~~~~~~lplsy~t~GQ~VPeDi~~a~~~~l~~~~l~g~~~~~ 408 (412)
T PRK05703 337 DIVKHFSR-LPLDGLILTKLDETSSLGSILSLLIESGLPISYLTDGQRVPDDIKVATPEELVRLALGGFLKCE 408 (412)
T ss_pred HHHHHHCC-CCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99998467-9998799971128998629999999988796999469997243422899999999858755567