HHsearch alignment for GI: 254780709 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00 E-value=0 Score=512.45 Aligned_cols=254 Identities=19% Similarity=0.288 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99999999999738898999999999998751278998999999999878520100121000136674123113544444
Q gi|254780709|r 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123 (321)
Q Consensus 44 ~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~G 123 (321)
T Consensus 13 ~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~~~~vi~~l~~~l~~~~~~~~-----~~~~~~~vI~lvG~~G~G 87 (270)
T PRK06731 13 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTEN-----VFEKEVQTIALIGPTGVG 87 (270)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-----CCCCCCEEEEEECCCCCC
T ss_conf 999999999997699889999999999988504553299999999999987507665-----467998189998889898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 24789999999852267426774345124568899999753035321223586612454228999965148759986543
Q gi|254780709|r 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 124 KTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
T Consensus 88 KTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~---~~~~~~~~~~~~~~~~~~DvilIDTAG 164 (270)
T PRK06731 88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAG 164 (270)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCC---CHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89999999999986799089998388888899999999998199535458---878999999999997699999997999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 3321157789999899876302223430112310233-522577899987643589769996545787069999999997
Q gi|254780709|r 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282 (321)
Q Consensus 204 R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~-~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~ 282 (321)
T Consensus 165 R~~~d~~lm~el~~~~~~~~------p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~als~~~~~ 237 (270)
T PRK06731 165 KNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred CCCCCHHHHHHHHHHHCCCC------CCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 87146999999999860638------98799998687776999999998077-999889996535899772999999998
Q ss_pred CCCEEEEECCCCC-CCCCCCCHHHHHHHHCC
Q ss_conf 6988999758981-32555778999998728
Q gi|254780709|r 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 (321)
Q Consensus 283 ~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG 312 (321)
T Consensus 238 ~~PI~fig~Ge~VpeDi~~~~~~~la~riL~ 268 (270)
T PRK06731 238 SAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred CCCEEEEECCCCCHHHHHCCCHHHHHHHHHH
T ss_conf 8597999459997021413799999999830