HHsearch alignment for GI: 254780709 and conserved domain: PRK07133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.69 E-value=0.00017 Score=51.79 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 674123113544444247899999998522674267743451245688999997530353212235----8661245422
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----GSDAAALAYE 184 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~----~~dp~~v~~~ 184 (321)
T Consensus 38 RIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~---------~~~~s~DViEIDAASn~gVDdIReLie 108 (718)
T PRK07133 38 KISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE---------NFNNNLDIIEMDAASNNGVDEIRELRE 108 (718)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH---------CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 97505862389986889999999999679999999997702143---------047898737754556688899999999
Q ss_pred HHHHHH-HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH
Q ss_conf 899996-51487599865433321157789999899876302223430112310233522
Q gi|254780709|r 185 AFKQAQ-AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243 (321)
Q Consensus 185 a~~~a~-~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq 243 (321)
T Consensus 109 ~v~y~P~~gkYKVyIIDEvHMLS~~A--fNALL-------KtLEEPP~hvvFIL-aTTep 158 (718)
T PRK07133 109 NVKNLPQISKYKIYIIDEVHMLSKSA--FNALL-------KTLEEPPKHVIFIL-ATTDV 158 (718)
T ss_pred HHCCCCCCCCEEEEEEECCCCCCHHH--HHHHH-------HHHCCCCCCCEEEE-EECCH
T ss_conf 82558877872499996620079999--99999-------85027987827999-70882