HHsearch alignment for GI: 254780709 and conserved domain: PRK07940
>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=97.41 E-value=0.004 Score=42.23 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 98999999999878520100121000136674123113544444247899999998522674267743451245688999
Q gi|254780709|r 80 SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159 (321)
Q Consensus 80 ~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~ 159 (321)
T Consensus 9 GQe~v~~~L~~A~~~~R~~~~~~-~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~--~~cg~C~~C---~~i 82 (395)
T PRK07940 9 GQDAVVAELRAAARAARADSAHS-AAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV--PGCGECRAC---RTV 82 (395)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCHHH---HHH
T ss_conf 92999999999998363434433-334687660376368998788999999999966999999--999878789---998
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9975303532122358661245422899996----514875998654333211577899998998763022234301123
Q gi|254780709|r 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235 (321)
Q Consensus 160 ~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~l 235 (321)
T Consensus 83 ~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~---------NalLKtLEEPp~~~~f 153 (395)
T PRK07940 83 LAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAA---------NALLKAVEEPPPRTVW 153 (395)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHH---------HHHHHHHCCCCCCEEE
T ss_conf 7689987189826877688999999999985273037955999807787489999---------9999852178888699
Q ss_pred ECCCCCCHHHHHHHHHHHHHC
Q ss_conf 102335225778999876435
Q gi|254780709|r 236 VLDATTGQNALRQVEMFHAVA 256 (321)
Q Consensus 236 Vlda~~gq~~~~~a~~F~~~~ 256 (321)
T Consensus 154 iL~t~~~~~llpTI~SRcq~~ 174 (395)
T PRK07940 154 LLCAPSVEDVLPTIRSRCRHV 174 (395)
T ss_pred EEEECCHHHHHHHHHHHHEEC
T ss_conf 987399787446887440002