HHsearch alignment for GI: 254780709 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=95.62 E-value=0.012 Score=38.93 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=84.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426774345124568899999753035321223586612454228999965
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~ 191 (321)
T Consensus 158 kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~----~~~lK~s--------~~d--~s-----~~~~i~~--~ 216 (306)
T PRK08939 158 KGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF----IRELKNA--------ISD--GS-----VKEKIDA--V 216 (306)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHH--------HCC--CC-----HHHHHHH--H
T ss_conf 778898999998999999999999986992999875999----9999998--------648--98-----8999999--8
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 1487599865433321157789999899876302-223430112310233522577899987643589769996545787
Q gi|254780709|r 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270 (321)
Q Consensus 192 ~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~-~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta 270 (321)
T Consensus 217 k~~~vLiLDDiGaE~~t~W~rd~vl~~--IL~~Rm~~~lP--Tff--TSN~~~~eLe--~~l~~~-~-------~~~e~~ 280 (306)
T PRK08939 217 KEAPVLMLDDIGAEQMSSWVRDEVLGV--ILQYRMQEELP--TFF--TSNFDFDELE--HHLAYT-Q-------RGDETV 280 (306)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHH--HHHHHHHCCCC--EEE--ECCCCHHHHH--HHHHHC-C-------CCCCHH
T ss_conf 449989984446542677789989999--99999974999--799--7799999999--998632-6-------995379
Q ss_pred CHHHHHHHHHHHCCCEEEEEC
Q ss_conf 069999999997698899975
Q gi|254780709|r 271 RGGGLIPIVVTHKIPVYFLGV 291 (321)
Q Consensus 271 ~~G~~ls~~~~~~~Pi~fig~ 291 (321)
T Consensus 281 ka~RimeRI~~l~~~v~l~G~ 301 (306)
T PRK08939 281 KAARIMERIRYLAKEVHLEGK 301 (306)
T ss_pred HHHHHHHHHHHHCEEEEECCC
T ss_conf 999999999985735871477