HHsearch alignment for GI: 254780709 and conserved domain: PRK10463
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional.
Probab=98.02 E-value=5.9e-05 Score=55.11 Aligned_cols=167 Identities=20% Similarity=0.296 Sum_probs=113.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHH
Q ss_conf 674123113544444247899999998522674267743451245688999997530353212235866---12454228
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD---AAALAYEA 185 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~v~~~a 185 (321)
T Consensus 102 ~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~-~~~aVIeGD~~T~~DA~RI~~----~Gv~avQInTG~~CHLDA~MV~~a 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHH----CCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 791899930699878899999999987336-757999604235667999997----699589954799767599999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHHCCCCEEEEE
Q ss_conf 99996514875998654333211577899998998763022234301123102335225-77899987643589769996
Q gi|254780709|r 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-ALRQVEMFHAVAGTTGLIMT 264 (321)
Q Consensus 186 ~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-~~~~a~~F~~~~~~~g~I~T 264 (321)
T Consensus 177 l~~l~l~~~dllfIENVGNLV---------------CPA~FDLGE~~kVvvlSVtEGeDKPlKYP~mF~~a---d~vlin 238 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLV---------------CPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAA---SLMLLN 238 (290)
T ss_pred HHHCCCCCCCEEEEECCCCCC---------------CCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHC---CEEEEE
T ss_conf 984898779899981278843---------------55120367761799997068888644476676425---789986
Q ss_pred CCCCCCCHH----HHHHHHHH--HCCCEEEEE--CCCCCCCC
Q ss_conf 545787069----99999999--769889997--58981325
Q gi|254780709|r 265 KMDGTARGG----GLIPIVVT--HKIPVYFLG--VGEGINDL 298 (321)
Q Consensus 265 KlD~ta~~G----~~ls~~~~--~~~Pi~fig--~Ge~i~Dl 298 (321)
T Consensus 239 KiDLlp~~dFD~~~~~~~~~~vNp~~~v~~vSa~tGeGld~W 280 (290)
T PRK10463 239 KVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW 280 (290)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 565122028899999999998698985899756888789999