HHsearch alignment for GI: 254780709 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=97.51 E-value=0.012 Score=38.86 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-C----------------C----------CHHH---H-------HH
Q ss_conf 9999999999973889899999999999875127-8----------------9----------9899---9-------99
Q gi|254780709|r 44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-D----------------V----------SVQR---V-------LY 86 (321)
Q Consensus 44 ~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~-~----------------i----------~~~~---i-------~~ 86 (321)
T Consensus 249 ~e~~~~~~ki~~~~~p~~~~~~~~~El~rl~~~~~~s~E~~v~r~YLd~l~~LPW~~~t~d~~dl~~A~~iLd~dHyGL~ 328 (784)
T PRK10787 249 DENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLE 328 (784)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
T ss_conf 48999999998779998999999999999971899894188999999999759988887875699999998765430657
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----------CCCC---CHH
Q ss_conf 999987852010012100013667412311354444424789999999852267426774----------3451---245
Q gi|254780709|r 87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA----------GDTF---RSA 153 (321)
Q Consensus 87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva----------~Dtf---R~a 153 (321)
T Consensus 329 ~vKeRile~lAv~----~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampG 404 (784)
T PRK10787 329 RVKDRILEYLAVQ----SRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPG 404 (784)
T ss_pred HHHHHHHHHHHHH----HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH
T ss_conf 7999999999999----862467787799646998772469999999858986998068878888825643343443683
Q ss_pred H-HHHHHHHHHHHCC------CCCCCCCCCCCHHHHHHHHHHHHHHC------------CCEEEEECCCCCCCHHHHHHH
Q ss_conf 6-8899999753035------32122358661245422899996514------------875998654333211577899
Q gi|254780709|r 154 A-IDQLKIWADRTSA------DFVCSEIGSDAAALAYEAFKQAQAKK------------VDVLIIDTAGRLHNNSILMAG 214 (321)
Q Consensus 154 A-~eQL~~~a~~~~v------~~~~~~~~~dp~~v~~~a~~~a~~~~------------~DvvliDTAGR~~~~~~lm~E 214 (321)
T Consensus 405 rii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~~ip~pLlDR 484 (784)
T PRK10787 405 KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDR 484 (784)
T ss_pred HHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCCCCCHHHHHH
T ss_conf 89999997489885665003555224558998899998459765564000322046452225899732767787677631
Q ss_pred H
Q ss_conf 9
Q gi|254780709|r 215 I 215 (321)
Q Consensus 215 L 215 (321)
T Consensus 485 m 485 (784)
T PRK10787 485 M 485 (784)
T ss_pred E
T ss_conf 2