HHsearch alignment for GI: 254780709 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=97.67 E-value=0.00077 Score=47.25 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=63.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHH-H-HCCCC-EEEEECCCCCHHHH--HHHHHHHHHHCCCC----------CCC--CC
Q ss_conf 123113544444247899999998-5-22674-26774345124568--89999975303532----------122--35
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKM-S-DAGLK-VMLAAGDTFRSAAI--DQLKIWADRTSADF----------VCS--EI 174 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~-~-~~g~k-V~lva~DtfR~aA~--eQL~~~a~~~~v~~----------~~~--~~ 174 (321)
T Consensus 163 ~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~TiHRLL 242 (607)
T PRK10875 163 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 242 (607)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHC
T ss_conf 77899679998778899999999999645899708998822899999999998787534766566633765566589752
Q ss_pred CCCCHHHHHHHHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEECCC
Q ss_conf 86612454228999965--1487599865433321157789999899876302223430-11231023
Q gi|254780709|r 175 GSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQVLDA 239 (321)
Q Consensus 175 ~~dp~~v~~~a~~~a~~--~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~-~~~lVlda 239 (321)
T Consensus 243 g~~p~~~~f---~~~~~nPL~~DvlIVDEAS--MVDl~Lm~~LL---~Alp------~~aRLILvGD~ 296 (607)
T PRK10875 243 GAQPGSQRL---RYHAGNPLHLDVLVVDEAS--MIDLPMMSRLI---DALP------DHARVIFLGDR 296 (607)
T ss_pred CCCCCCCCC---CCCCCCCCCCCEEEEECCH--HHHHHHHHHHH---HHCC------CCCEEEEECCH
T ss_conf 967898765---6577999988989990733--66599999999---8289------99889996562