HHsearch alignment for GI: 254780709 and conserved domain: PRK11034

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=97.27  E-value=0.0021  Score=44.18  Aligned_cols=80  Identities=30%  Similarity=0.395  Sum_probs=46.0

Q ss_pred             CCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH------HCCCC-CCCC-CCCCC
Q ss_conf             6674-12311354444424789999999852267426774345124568899999753------03532-1223-58661
Q gi|254780709|r  108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR------TSADF-VCSE-IGSDA  178 (321)
Q Consensus       108 ~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~------~~v~~-~~~~-~~~dp  178 (321)
T Consensus       484 ~~rPigsFlf~GPTGVGKTElak~LA~~L~~---~--lir~D---------MSEy~e~hsvsrLiGaPPGYVGy~eGG--  547 (758)
T PRK11034        484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---E--LLRFD---------MSEYMERHTVSRLIGAPPGYVGFDQGG--  547 (758)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---H--HHCCC---------HHHHCCHHHHHHHCCCCCCCCCCCCCC--
T ss_conf             9997058999789987779999999999866---7--72142---------665312014777448998666767777--


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf             245422899996514875998654333211
Q gi|254780709|r  179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN  208 (321)
Q Consensus       179 ~~v~~~a~~~a~~~~~DvvliDTAGR~~~~  208 (321)
T Consensus       548 --~Lte~V---r~~PysVvL~DEIEKAhpd  572 (758)
T PRK11034        548 --LLTDAV---IKHPHAVLLLDEIEKAHPD  572 (758)
T ss_pred             --CCCHHH---HHCCCEEEEEHHHHHHCHH
T ss_conf             --012878---7398779973367563989