HHsearch alignment for GI: 254780709 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=97.27 E-value=0.0021 Score=44.18 Aligned_cols=80 Identities=30% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCC-CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH------HCCCC-CCCC-CCCCC
Q ss_conf 6674-12311354444424789999999852267426774345124568899999753------03532-1223-58661
Q gi|254780709|r 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR------TSADF-VCSE-IGSDA 178 (321)
Q Consensus 108 ~~~p-~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~------~~v~~-~~~~-~~~dp 178 (321)
T Consensus 484 ~~rPigsFlf~GPTGVGKTElak~LA~~L~~---~--lir~D---------MSEy~e~hsvsrLiGaPPGYVGy~eGG-- 547 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---E--LLRFD---------MSEYMERHTVSRLIGAPPGYVGFDQGG-- 547 (758)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---H--HHCCC---------HHHHCCHHHHHHHCCCCCCCCCCCCCC--
T ss_conf 9997058999789987779999999999866---7--72142---------665312014777448998666767777--
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 245422899996514875998654333211
Q gi|254780709|r 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208 (321)
Q Consensus 179 ~~v~~~a~~~a~~~~~DvvliDTAGR~~~~ 208 (321)
T Consensus 548 --~Lte~V---r~~PysVvL~DEIEKAhpd 572 (758)
T PRK11034 548 --LLTDAV---IKHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred --CCCHHH---HHCCCEEEEEHHHHHHCHH
T ss_conf --012878---7398779973367563989