HHsearch alignment for GI: 254780709 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=96.87  E-value=0.006  Score=41.02  Aligned_cols=94  Identities=15%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r  107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF  186 (321)
Q Consensus       107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~  186 (321)
T Consensus        97 F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~----dLv~~L~~a~----------~~g~~~~k~----l  158 (248)
T PRK12377         97 LMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESY----------DNGQSGEKF----L  158 (248)
T ss_pred             HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHHHHHHHHH----------HCCCCHHHH----H
T ss_conf             731886089989999878899999999999879969998899----9999999999----------848509999----9


Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9996514875998654333211577899998998763
Q gi|254780709|r  187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK  223 (321)
Q Consensus       187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~  223 (321)
T Consensus       159 ~--~l~~~dLLIIDElG~~~~s~~---~~~llfqlI~  190 (248)
T PRK12377        159 Q--ELCKVDLLVLDEIGIQRETKN---EQVVLNQIID  190 (248)
T ss_pred             H--HHHCCCEEEEHHCCCCCCCHH---HHHHHHHHHH
T ss_conf             9--973389898600057889867---9999999999