HHsearch alignment for GI: 254780709 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=96.87 E-value=0.006 Score=41.02 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 36674123113544444247899999998522674267743451245688999997530353212235866124542289
Q gi|254780709|r 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 107 ~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~ 186 (321)
T Consensus 97 F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~----dLv~~L~~a~----------~~g~~~~k~----l 158 (248)
T PRK12377 97 LMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESY----------DNGQSGEKF----L 158 (248)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHHHHHHHHH----------HCCCCHHHH----H
T ss_conf 731886089989999878899999999999879969998899----9999999999----------848509999----9
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9996514875998654333211577899998998763
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~ 223 (321)
T Consensus 159 ~--~l~~~dLLIIDElG~~~~s~~---~~~llfqlI~ 190 (248)
T PRK12377 159 Q--ELCKVDLLVLDEIGIQRETKN---EQVVLNQIID 190 (248)
T ss_pred H--HHHCCCEEEEHHCCCCCCCHH---HHHHHHHHHH
T ss_conf 9--973389898600057889867---9999999999