HHsearch alignment for GI: 254780709 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00  E-value=0  Score=445.47  Aligned_cols=265  Identities=22%  Similarity=0.284  Sum_probs=215.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             7789999999999999738898999999999998751278998-999999999878520100121000136674123113
Q gi|254780709|r   39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV  117 (321)
Q Consensus        39 ~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~v  117 (321)
T Consensus       104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~l~~~i~~~i~~-~~~~--~~~~k~~vi~lV  180 (388)
T PRK12723        104 EEINHPTILKIEDILRSNDFSESYIKDINEFIKREFSLSDLDDYDKVRDSVIIYIAKTIKC-SGSI--IDNLKKRIFILV  180 (388)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CCCC--CCCCCCEEEEEE
T ss_conf             4445535899999998675579999999999998722122440879999999999976223-6665--335576289998


Q ss_pred             CCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             54444424789999999852----26742677434512456889999975303532122358661245422899996514
Q gi|254780709|r  118 GVNGVGKTTVIGKLSKKMSD----AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK  193 (321)
Q Consensus       118 G~nG~GKTTT~aKLA~~~~~----~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~  193 (321)
T Consensus       181 GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~--~~~~  254 (388)
T PRK12723        181 GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEIT--QSKD  254 (388)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHH--HHCC
T ss_conf             998875787999999999986267677379998078758899999999999788069857889999----9999--7249


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             8759986543332115778999989987630222343011231023352257789-998764358976999654578706
Q gi|254780709|r  194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARG  272 (321)
Q Consensus       194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~-a~~F~~~~~~~g~I~TKlD~ta~~  272 (321)
T Consensus       255 ~D~IlIDTAGrs~~d~~~~~el~~~~~~~~-----~~~~~~Lvlsat~~~~d~~~i~~~f-~~~~~~~~I~TKlDEt~~~  328 (388)
T PRK12723        255 FDLVLIDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDIKEIFHQF-SPFSYKTVIFTKLDETTCV  328 (388)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCCCC
T ss_conf             999999589988568999999999997418-----9845999987989999999999984-2799984999832278986


Q ss_pred             HHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCC--CCCCCC
Q ss_conf             99999999976988999758981-32555778999998728--656463
Q gi|254780709|r  273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG--CLDYGE  318 (321)
Q Consensus       273 G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG--~gd~~~  318 (321)
T Consensus       329 G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~  377 (388)
T PRK12723        329 GNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAE  377 (388)
T ss_pred             CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf             6999999998888699938996830203389999999984871454699