HHsearch alignment for GI: 254780709 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=445.47 Aligned_cols=265 Identities=22% Similarity=0.284 Sum_probs=215.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 7789999999999999738898999999999998751278998-999999999878520100121000136674123113
Q gi|254780709|r 39 RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117 (321)
Q Consensus 39 ~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~-~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~v 117 (321)
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~l~~~i~~~i~~-~~~~--~~~~k~~vi~lV 180 (388)
T PRK12723 104 EEINHPTILKIEDILRSNDFSESYIKDINEFIKREFSLSDLDDYDKVRDSVIIYIAKTIKC-SGSI--IDNLKKRIFILV 180 (388)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CCCC--CCCCCCEEEEEE
T ss_conf 4445535899999998675579999999999998722122440879999999999976223-6665--335576289998
Q ss_pred CCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 54444424789999999852----26742677434512456889999975303532122358661245422899996514
Q gi|254780709|r 118 GVNGVGKTTVIGKLSKKMSD----AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193 (321)
Q Consensus 118 G~nG~GKTTT~aKLA~~~~~----~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~ 193 (321)
T Consensus 181 GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~--~~~~ 254 (388)
T PRK12723 181 GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEIT--QSKD 254 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHH--HHCC
T ss_conf 998875787999999999986267677379998078758899999999999788069857889999----9999--7249
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 8759986543332115778999989987630222343011231023352257789-998764358976999654578706
Q gi|254780709|r 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARG 272 (321)
Q Consensus 194 ~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~-a~~F~~~~~~~g~I~TKlD~ta~~ 272 (321)
T Consensus 255 ~D~IlIDTAGrs~~d~~~~~el~~~~~~~~-----~~~~~~Lvlsat~~~~d~~~i~~~f-~~~~~~~~I~TKlDEt~~~ 328 (388)
T PRK12723 255 FDLVLIDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDIKEIFHQF-SPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCCCC
T ss_conf 999999589988568999999999997418-----9845999987989999999999984-2799984999832278986
Q ss_pred HHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCC--CCCCCC
Q ss_conf 99999999976988999758981-32555778999998728--656463
Q gi|254780709|r 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG--CLDYGE 318 (321)
Q Consensus 273 G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG--~gd~~~ 318 (321)
T Consensus 329 G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~ 377 (388)
T PRK12723 329 GNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAE 377 (388)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf 6999999998888699938996830203389999999984871454699