HHsearch alignment for GI: 254780709 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=98.68 E-value=1.1e-07 Score=74.37 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=89.0
Q ss_pred EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r 113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF 186 (321)
Q Consensus 113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~ 186 (321)
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s-----~~~W~e~a~~~~~~~~~~~v-~~~~~~~~l~~~~ 76 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP-----LTRWKENALRSNTWDPACEV-YAADELPLLEAAY 76 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCCCE-EECCCHHHHHHHH
T ss_conf 79996189987699999999999997899599996899868-----89999876525898877523-4056525789999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH----------HHHHHHHHHC
Q ss_conf 999651487599865433321157789999899876302223430112310233522577----------8999876435
Q gi|254780709|r 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL----------RQVEMFHAVA 256 (321)
Q Consensus 187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~----------~~a~~F~~~~ 256 (321)
T Consensus 77 e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~-----------ADLVLIP~-qPSp~D~~~a~~tv~~i~~~~~~~~~~i 141 (231)
T PRK13849 77 EDAELQGFDYALADTHGGSSE---LNNTIIAS-----------SNLLLIPT-MLTPLDIDEALSTYRYVIELLLSENLAI 141 (231)
T ss_pred HHHHHCCCCEEEECCCCCCCH---HHHHHHHH-----------CCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 887536998899818997758---99999997-----------89899779-9986679999999999999999728788
Q ss_pred CCCEEEEECCCCC--CCHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8976999654578--70699999999976988999758981
Q gi|254780709|r 257 GTTGLIMTKMDGT--ARGGGLIPIVVTHKIPVYFLGVGEGI 295 (321)
Q Consensus 257 ~~~g~I~TKlD~t--a~~G~~ls~~~~~~~Pi~fig~Ge~i 295 (321)
T Consensus 142 p~-~vlltRv~a~~~t~~~~~i~~~l-e~lPvl~T~i~eR~ 180 (231)
T PRK13849 142 PT-AILRQRVPVGRLTTSQRAMSDML-ESLPVVDSPMHERD 180 (231)
T ss_pred CE-EEEEEECCHHHHCHHHHHHHHHH-HCCCCCCCCCHHHH
T ss_conf 65-66654050454068899999999-62995555302279