HHsearch alignment for GI: 254780709 and conserved domain: PRK13849

>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=98.68  E-value=1.1e-07  Score=74.37  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             EEECC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf             23113-5444442478999999985226742677434512456889999975---3035--3212235866124542289
Q gi|254780709|r  113 VILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSA--DFVCSEIGSDAAALAYEAF  186 (321)
Q Consensus       113 vil~v-G~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---~~~v--~~~~~~~~~dp~~v~~~a~  186 (321)
T Consensus         3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s-----~~~W~e~a~~~~~~~~~~~v-~~~~~~~~l~~~~   76 (231)
T PRK13849          3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP-----LTRWKENALRSNTWDPACEV-YAADELPLLEAAY   76 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-----HHHHHHHHHHCCCCCCCCCE-EECCCHHHHHHHH
T ss_conf             79996189987699999999999997899599996899868-----89999876525898877523-4056525789999


Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH----------HHHHHHHHHC
Q ss_conf             999651487599865433321157789999899876302223430112310233522577----------8999876435
Q gi|254780709|r  187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL----------RQVEMFHAVA  256 (321)
Q Consensus       187 ~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~----------~~a~~F~~~~  256 (321)
T Consensus        77 e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~-----------ADLVLIP~-qPSp~D~~~a~~tv~~i~~~~~~~~~~i  141 (231)
T PRK13849         77 EDAELQGFDYALADTHGGSSE---LNNTIIAS-----------SNLLLIPT-MLTPLDIDEALSTYRYVIELLLSENLAI  141 (231)
T ss_pred             HHHHHCCCCEEEECCCCCCCH---HHHHHHHH-----------CCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             887536998899818997758---99999997-----------89899779-9986679999999999999999728788


Q ss_pred             CCCEEEEECCCCC--CCHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8976999654578--70699999999976988999758981
Q gi|254780709|r  257 GTTGLIMTKMDGT--ARGGGLIPIVVTHKIPVYFLGVGEGI  295 (321)
Q Consensus       257 ~~~g~I~TKlD~t--a~~G~~ls~~~~~~~Pi~fig~Ge~i  295 (321)
T Consensus       142 p~-~vlltRv~a~~~t~~~~~i~~~l-e~lPvl~T~i~eR~  180 (231)
T PRK13849        142 PT-AILRQRVPVGRLTTSQRAMSDML-ESLPVVDSPMHERD  180 (231)
T ss_pred             CE-EEEEEECCHHHHCHHHHHHHHHH-HCCCCCCCCCHHHH
T ss_conf             65-66654050454068899999999-62995555302279